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Potassium in PDB 9mme: Roolfirm-Octamer-Wild Type

Other elements in 9mme:

The structure of Roolfirm-Octamer-Wild Type also contains other interesting chemical elements:

Magnesium (Mg) 41 atoms

Potassium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 56;

Binding sites:

The binding sites of Potassium atom in the Roolfirm-Octamer-Wild Type (pdb code 9mme). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 56 binding sites of Potassium where determined in the Roolfirm-Octamer-Wild Type, PDB code: 9mme:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 56 in 9mme

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Potassium binding site 1 out of 56 in the Roolfirm-Octamer-Wild Type


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Roolfirm-Octamer-Wild Type within 5.0Å range:
probe atom residue distance (Å) B Occ
U:K605

b:66.9
occ:1.00
OP2 U:G366 2.8 5.3 1.0
N6 U:A368 4.0 5.0 1.0
P U:G366 4.2 5.0 1.0
OP2 U:A367 4.6 5.0 1.0
N7 U:A367 4.6 5.0 1.0
O5' U:G366 4.8 5.0 1.0
N7 U:A368 4.8 5.0 1.0
C5' U:U365 4.9 5.6 1.0
C2 U:A369 4.9 5.0 1.0

Potassium binding site 2 out of 56 in 9mme

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Potassium binding site 2 out of 56 in the Roolfirm-Octamer-Wild Type


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Roolfirm-Octamer-Wild Type within 5.0Å range:
probe atom residue distance (Å) B Occ
U:K606

b:46.5
occ:1.00
OP2 U:A425 2.7 6.7 1.0
O4 U:U426 2.7 14.9 1.0
C4 U:U426 3.7 5.3 1.0
N6 U:A367 4.1 5.0 1.0
P U:A425 4.1 8.6 1.0
C5 U:U426 4.2 5.0 1.0
N1 U:A368 4.4 5.0 1.0
O4 U:U427 4.4 5.0 1.0
OP2 U:U365 4.5 15.2 1.0
O5' U:A424 4.5 8.7 1.0
OP2 U:A424 4.7 8.8 1.0
OP1 U:A425 4.7 5.2 1.0
O3' U:A424 4.9 10.1 1.0
OP1 U:A424 4.9 11.6 1.0
N3 U:U426 4.9 5.0 1.0
C3' U:A424 4.9 13.0 1.0
P U:A424 4.9 6.4 1.0

Potassium binding site 3 out of 56 in 9mme

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Potassium binding site 3 out of 56 in the Roolfirm-Octamer-Wild Type


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Roolfirm-Octamer-Wild Type within 5.0Å range:
probe atom residue distance (Å) B Occ
U:K607

b:44.9
occ:1.00
OP2 U:A164 2.6 10.5 1.0
N7 U:G165 2.7 10.2 1.0
C8 U:G165 3.6 11.5 1.0
C5 U:G165 3.7 5.0 1.0
O6 U:G165 3.7 9.5 1.0
P U:A164 4.0 21.7 1.0
C6 U:G165 4.1 5.0 1.0
OP1 U:A164 4.5 6.6 1.0
N9 U:G165 4.9 5.0 1.0
O5' U:A164 4.9 5.9 1.0
C4 U:G165 4.9 5.0 1.0

Potassium binding site 4 out of 56 in 9mme

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Potassium binding site 4 out of 56 in the Roolfirm-Octamer-Wild Type


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Roolfirm-Octamer-Wild Type within 5.0Å range:
probe atom residue distance (Å) B Occ
U:K608

b:87.5
occ:1.00
OP2 U:A214 3.5 5.0 1.0
OP2 U:A215 4.3 5.0 1.0
N7 U:G216 4.3 5.0 1.0
N7 U:A215 4.4 8.1 1.0
P U:A214 4.5 5.0 1.0
O6 U:G216 4.5 5.0 1.0
O5' U:A214 4.6 6.2 1.0
N6 U:A215 4.8 5.0 1.0

Potassium binding site 5 out of 56 in 9mme

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Potassium binding site 5 out of 56 in the Roolfirm-Octamer-Wild Type


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Roolfirm-Octamer-Wild Type within 5.0Å range:
probe atom residue distance (Å) B Occ
U:K609

b:60.8
occ:1.00
O6 U:G264 2.9 5.0 1.0
O6 U:G302 3.1 8.5 1.0
O4 U:U303 3.1 13.5 1.0
N4 U:C265 3.9 5.0 1.0
C6 U:G264 4.0 5.0 1.0
C4 U:U303 4.1 5.0 1.0
C6 U:G302 4.1 5.0 1.0
N3 U:U303 4.2 5.0 1.0
OP2 U:A262 4.3 5.0 1.0
N7 U:G264 4.4 5.0 1.0
OP2 U:A263 4.4 7.3 1.0
C5 U:G264 4.6 5.0 1.0
N7 U:A263 4.6 5.0 1.0
OP1 U:A262 4.8 11.9 1.0
P U:A262 4.9 5.0 1.0
C4 U:C265 4.9 5.0 1.0
C5 U:G302 4.9 5.0 1.0
N1 U:G302 5.0 5.0 1.0

Potassium binding site 6 out of 56 in 9mme

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Potassium binding site 6 out of 56 in the Roolfirm-Octamer-Wild Type


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Roolfirm-Octamer-Wild Type within 5.0Å range:
probe atom residue distance (Å) B Occ
U:K610

b:59.6
occ:1.00
O4 U:U421 2.9 7.9 1.0
O6 U:G420 3.2 5.0 1.0
OP2 U:U371 3.6 7.8 1.0
O6 U:G373 3.7 5.0 1.0
C4 U:U421 3.9 5.0 1.0
OP2 U:A372 4.2 8.1 1.0
C6 U:G420 4.2 5.0 1.0
N2 U:G422 4.3 5.5 1.0
N3 U:U421 4.3 5.0 1.0
N1 U:G422 4.4 5.0 1.0
N4 U:C374 4.5 5.0 1.0
N7 U:G420 4.5 5.0 1.0
C2 U:G422 4.5 5.0 1.0
C5 U:G420 4.7 5.0 1.0
C6 U:G373 4.9 5.0 1.0
P U:U371 4.9 5.0 1.0
O6 U:G419 4.9 5.0 1.0

Potassium binding site 7 out of 56 in 9mme

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Potassium binding site 7 out of 56 in the Roolfirm-Octamer-Wild Type


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Roolfirm-Octamer-Wild Type within 5.0Å range:
probe atom residue distance (Å) B Occ
U:K611

b:30.0
occ:1.00
OP2 U:A24 2.7 9.7 1.0
P U:A24 3.8 12.1 1.0
OP1 U:A24 4.0 12.8 1.0
N7 U:G28 4.0 12.4 1.0
O6 U:G28 4.4 7.4 1.0
OP1 U:A23 4.4 11.8 1.0
N4 U:C27 4.7 5.5 1.0
O5' U:A24 4.7 7.4 1.0
C5 U:C27 4.7 11.5 1.0
C5 U:G28 4.9 6.7 1.0
C4 U:C27 4.9 6.7 1.0
C8 U:G28 5.0 9.0 1.0
C8 U:A24 5.0 7.2 1.0
C6 U:G28 5.0 5.0 1.0

Potassium binding site 8 out of 56 in 9mme

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Potassium binding site 8 out of 56 in the Roolfirm-Octamer-Wild Type


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Roolfirm-Octamer-Wild Type within 5.0Å range:
probe atom residue distance (Å) B Occ
U:K612

b:30.0
occ:1.00
OP2 U:A355 2.7 5.0 1.0
C8 U:G354 3.5 5.0 1.0
C3' U:G354 3.8 5.4 1.0
N7 U:G354 3.9 5.0 1.0
O5' U:G354 4.0 5.3 1.0
N9 U:G354 4.1 5.0 1.0
N7 U:A355 4.1 5.0 1.0
P U:A355 4.1 5.0 1.0
C8 U:A355 4.3 5.0 1.0
C2' U:G354 4.4 5.0 1.0
O3' U:G354 4.4 5.0 1.0
OP2 U:G354 4.5 5.7 1.0
C5 U:G354 4.6 5.0 1.0
C1' U:G354 4.6 5.0 1.0
C4' U:G354 4.6 5.0 1.0
C4 U:G354 4.7 5.0 1.0
C5' U:G354 4.7 7.0 1.0
O4' U:G354 4.7 5.0 1.0
O5' U:A355 4.7 5.0 1.0
P U:G354 4.9 5.0 1.0

Potassium binding site 9 out of 56 in 9mme

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Potassium binding site 9 out of 56 in the Roolfirm-Octamer-Wild Type


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Roolfirm-Octamer-Wild Type within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:K603

b:30.0
occ:1.00
OP2 Y:A24 2.7 9.7 1.0
N7 Y:G28 3.9 12.4 1.0
P Y:A24 3.9 12.1 1.0
OP1 Y:A24 4.1 12.8 1.0
O6 Y:G28 4.2 7.4 1.0
OP1 Y:A23 4.5 11.8 1.0
N4 Y:C27 4.6 5.5 1.0
C5 Y:G28 4.7 6.7 1.0
C5 Y:C27 4.7 11.5 1.0
C6 Y:G28 4.8 5.0 1.0
O5' Y:A24 4.8 7.4 1.0
C8 Y:G28 4.8 9.0 1.0
C4 Y:C27 4.9 6.7 1.0
N6 Y:A29 4.9 5.4 1.0
C8 Y:A24 5.0 7.2 1.0

Potassium binding site 10 out of 56 in 9mme

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Potassium binding site 10 out of 56 in the Roolfirm-Octamer-Wild Type


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Roolfirm-Octamer-Wild Type within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:K604

b:30.0
occ:1.00
OP2 Y:A45 2.6 14.3 1.0
N7 Y:G46 3.3 8.8 1.0
O5' Y:A45 3.3 17.6 1.0
O6 Y:G46 3.5 13.4 1.0
P Y:A45 3.6 24.4 1.0
C8 Y:A45 3.9 13.7 1.0
C5 Y:G46 4.1 7.6 1.0
C6 Y:G46 4.1 11.8 1.0
N7 Y:A45 4.2 17.2 1.0
C8 Y:G46 4.3 12.9 1.0
C5' Y:A45 4.4 14.8 1.0
OP2 Y:C44 4.6 5.0 1.0
C3' Y:C44 4.7 8.1 1.0
O3' Y:C44 4.7 11.3 1.0
OP1 Y:A45 4.7 15.2 1.0
O5' Y:C44 4.8 5.0 1.0
O4' Y:A45 4.9 7.8 1.0
N9 Y:A45 4.9 9.5 1.0
C3' Y:A45 5.0 15.8 1.0
C4' Y:A45 5.0 14.6 1.0

Reference:

X.B.Ling, J.B.Ma, W.W.Fang, A.A.Korostelev. Roolfirm-Octamer-Wild Type To Be Published.
Page generated: Sat Aug 9 19:19:00 2025

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