Potassium in PDB 9mme: Roolfirm-Octamer-Wild Type
Other elements in 9mme:
The structure of Roolfirm-Octamer-Wild Type also contains other interesting chemical elements:
Potassium Binding Sites:
Potassium binding site 1 out
of 56 in 9mme
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Potassium Binding Sites List in 9mme
Potassium binding site 1 out
of 56 in the Roolfirm-Octamer-Wild Type
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Roolfirm-Octamer-Wild Type within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
U:K605
b:66.9
occ:1.00
|
OP2
|
U:G366
|
2.8
|
5.3
|
1.0
|
N6
|
U:A368
|
4.0
|
5.0
|
1.0
|
P
|
U:G366
|
4.2
|
5.0
|
1.0
|
OP2
|
U:A367
|
4.6
|
5.0
|
1.0
|
N7
|
U:A367
|
4.6
|
5.0
|
1.0
|
O5'
|
U:G366
|
4.8
|
5.0
|
1.0
|
N7
|
U:A368
|
4.8
|
5.0
|
1.0
|
C5'
|
U:U365
|
4.9
|
5.6
|
1.0
|
C2
|
U:A369
|
4.9
|
5.0
|
1.0
|
|
Potassium binding site 2 out
of 56 in 9mme
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Potassium Binding Sites List in 9mme
Potassium binding site 2 out
of 56 in the Roolfirm-Octamer-Wild Type
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Roolfirm-Octamer-Wild Type within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
U:K606
b:46.5
occ:1.00
|
OP2
|
U:A425
|
2.7
|
6.7
|
1.0
|
O4
|
U:U426
|
2.7
|
14.9
|
1.0
|
C4
|
U:U426
|
3.7
|
5.3
|
1.0
|
N6
|
U:A367
|
4.1
|
5.0
|
1.0
|
P
|
U:A425
|
4.1
|
8.6
|
1.0
|
C5
|
U:U426
|
4.2
|
5.0
|
1.0
|
N1
|
U:A368
|
4.4
|
5.0
|
1.0
|
O4
|
U:U427
|
4.4
|
5.0
|
1.0
|
OP2
|
U:U365
|
4.5
|
15.2
|
1.0
|
O5'
|
U:A424
|
4.5
|
8.7
|
1.0
|
OP2
|
U:A424
|
4.7
|
8.8
|
1.0
|
OP1
|
U:A425
|
4.7
|
5.2
|
1.0
|
O3'
|
U:A424
|
4.9
|
10.1
|
1.0
|
OP1
|
U:A424
|
4.9
|
11.6
|
1.0
|
N3
|
U:U426
|
4.9
|
5.0
|
1.0
|
C3'
|
U:A424
|
4.9
|
13.0
|
1.0
|
P
|
U:A424
|
4.9
|
6.4
|
1.0
|
|
Potassium binding site 3 out
of 56 in 9mme
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Potassium Binding Sites List in 9mme
Potassium binding site 3 out
of 56 in the Roolfirm-Octamer-Wild Type
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Roolfirm-Octamer-Wild Type within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
U:K607
b:44.9
occ:1.00
|
OP2
|
U:A164
|
2.6
|
10.5
|
1.0
|
N7
|
U:G165
|
2.7
|
10.2
|
1.0
|
C8
|
U:G165
|
3.6
|
11.5
|
1.0
|
C5
|
U:G165
|
3.7
|
5.0
|
1.0
|
O6
|
U:G165
|
3.7
|
9.5
|
1.0
|
P
|
U:A164
|
4.0
|
21.7
|
1.0
|
C6
|
U:G165
|
4.1
|
5.0
|
1.0
|
OP1
|
U:A164
|
4.5
|
6.6
|
1.0
|
N9
|
U:G165
|
4.9
|
5.0
|
1.0
|
O5'
|
U:A164
|
4.9
|
5.9
|
1.0
|
C4
|
U:G165
|
4.9
|
5.0
|
1.0
|
|
Potassium binding site 4 out
of 56 in 9mme
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Potassium Binding Sites List in 9mme
Potassium binding site 4 out
of 56 in the Roolfirm-Octamer-Wild Type
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 4 of Roolfirm-Octamer-Wild Type within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
U:K608
b:87.5
occ:1.00
|
OP2
|
U:A214
|
3.5
|
5.0
|
1.0
|
OP2
|
U:A215
|
4.3
|
5.0
|
1.0
|
N7
|
U:G216
|
4.3
|
5.0
|
1.0
|
N7
|
U:A215
|
4.4
|
8.1
|
1.0
|
P
|
U:A214
|
4.5
|
5.0
|
1.0
|
O6
|
U:G216
|
4.5
|
5.0
|
1.0
|
O5'
|
U:A214
|
4.6
|
6.2
|
1.0
|
N6
|
U:A215
|
4.8
|
5.0
|
1.0
|
|
Potassium binding site 5 out
of 56 in 9mme
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Potassium Binding Sites List in 9mme
Potassium binding site 5 out
of 56 in the Roolfirm-Octamer-Wild Type
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 5 of Roolfirm-Octamer-Wild Type within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
U:K609
b:60.8
occ:1.00
|
O6
|
U:G264
|
2.9
|
5.0
|
1.0
|
O6
|
U:G302
|
3.1
|
8.5
|
1.0
|
O4
|
U:U303
|
3.1
|
13.5
|
1.0
|
N4
|
U:C265
|
3.9
|
5.0
|
1.0
|
C6
|
U:G264
|
4.0
|
5.0
|
1.0
|
C4
|
U:U303
|
4.1
|
5.0
|
1.0
|
C6
|
U:G302
|
4.1
|
5.0
|
1.0
|
N3
|
U:U303
|
4.2
|
5.0
|
1.0
|
OP2
|
U:A262
|
4.3
|
5.0
|
1.0
|
N7
|
U:G264
|
4.4
|
5.0
|
1.0
|
OP2
|
U:A263
|
4.4
|
7.3
|
1.0
|
C5
|
U:G264
|
4.6
|
5.0
|
1.0
|
N7
|
U:A263
|
4.6
|
5.0
|
1.0
|
OP1
|
U:A262
|
4.8
|
11.9
|
1.0
|
P
|
U:A262
|
4.9
|
5.0
|
1.0
|
C4
|
U:C265
|
4.9
|
5.0
|
1.0
|
C5
|
U:G302
|
4.9
|
5.0
|
1.0
|
N1
|
U:G302
|
5.0
|
5.0
|
1.0
|
|
Potassium binding site 6 out
of 56 in 9mme
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Potassium Binding Sites List in 9mme
Potassium binding site 6 out
of 56 in the Roolfirm-Octamer-Wild Type
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 6 of Roolfirm-Octamer-Wild Type within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
U:K610
b:59.6
occ:1.00
|
O4
|
U:U421
|
2.9
|
7.9
|
1.0
|
O6
|
U:G420
|
3.2
|
5.0
|
1.0
|
OP2
|
U:U371
|
3.6
|
7.8
|
1.0
|
O6
|
U:G373
|
3.7
|
5.0
|
1.0
|
C4
|
U:U421
|
3.9
|
5.0
|
1.0
|
OP2
|
U:A372
|
4.2
|
8.1
|
1.0
|
C6
|
U:G420
|
4.2
|
5.0
|
1.0
|
N2
|
U:G422
|
4.3
|
5.5
|
1.0
|
N3
|
U:U421
|
4.3
|
5.0
|
1.0
|
N1
|
U:G422
|
4.4
|
5.0
|
1.0
|
N4
|
U:C374
|
4.5
|
5.0
|
1.0
|
N7
|
U:G420
|
4.5
|
5.0
|
1.0
|
C2
|
U:G422
|
4.5
|
5.0
|
1.0
|
C5
|
U:G420
|
4.7
|
5.0
|
1.0
|
C6
|
U:G373
|
4.9
|
5.0
|
1.0
|
P
|
U:U371
|
4.9
|
5.0
|
1.0
|
O6
|
U:G419
|
4.9
|
5.0
|
1.0
|
|
Potassium binding site 7 out
of 56 in 9mme
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Potassium Binding Sites List in 9mme
Potassium binding site 7 out
of 56 in the Roolfirm-Octamer-Wild Type
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 7 of Roolfirm-Octamer-Wild Type within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
U:K611
b:30.0
occ:1.00
|
OP2
|
U:A24
|
2.7
|
9.7
|
1.0
|
P
|
U:A24
|
3.8
|
12.1
|
1.0
|
OP1
|
U:A24
|
4.0
|
12.8
|
1.0
|
N7
|
U:G28
|
4.0
|
12.4
|
1.0
|
O6
|
U:G28
|
4.4
|
7.4
|
1.0
|
OP1
|
U:A23
|
4.4
|
11.8
|
1.0
|
N4
|
U:C27
|
4.7
|
5.5
|
1.0
|
O5'
|
U:A24
|
4.7
|
7.4
|
1.0
|
C5
|
U:C27
|
4.7
|
11.5
|
1.0
|
C5
|
U:G28
|
4.9
|
6.7
|
1.0
|
C4
|
U:C27
|
4.9
|
6.7
|
1.0
|
C8
|
U:G28
|
5.0
|
9.0
|
1.0
|
C8
|
U:A24
|
5.0
|
7.2
|
1.0
|
C6
|
U:G28
|
5.0
|
5.0
|
1.0
|
|
Potassium binding site 8 out
of 56 in 9mme
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Potassium Binding Sites List in 9mme
Potassium binding site 8 out
of 56 in the Roolfirm-Octamer-Wild Type
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 8 of Roolfirm-Octamer-Wild Type within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
U:K612
b:30.0
occ:1.00
|
OP2
|
U:A355
|
2.7
|
5.0
|
1.0
|
C8
|
U:G354
|
3.5
|
5.0
|
1.0
|
C3'
|
U:G354
|
3.8
|
5.4
|
1.0
|
N7
|
U:G354
|
3.9
|
5.0
|
1.0
|
O5'
|
U:G354
|
4.0
|
5.3
|
1.0
|
N9
|
U:G354
|
4.1
|
5.0
|
1.0
|
N7
|
U:A355
|
4.1
|
5.0
|
1.0
|
P
|
U:A355
|
4.1
|
5.0
|
1.0
|
C8
|
U:A355
|
4.3
|
5.0
|
1.0
|
C2'
|
U:G354
|
4.4
|
5.0
|
1.0
|
O3'
|
U:G354
|
4.4
|
5.0
|
1.0
|
OP2
|
U:G354
|
4.5
|
5.7
|
1.0
|
C5
|
U:G354
|
4.6
|
5.0
|
1.0
|
C1'
|
U:G354
|
4.6
|
5.0
|
1.0
|
C4'
|
U:G354
|
4.6
|
5.0
|
1.0
|
C4
|
U:G354
|
4.7
|
5.0
|
1.0
|
C5'
|
U:G354
|
4.7
|
7.0
|
1.0
|
O4'
|
U:G354
|
4.7
|
5.0
|
1.0
|
O5'
|
U:A355
|
4.7
|
5.0
|
1.0
|
P
|
U:G354
|
4.9
|
5.0
|
1.0
|
|
Potassium binding site 9 out
of 56 in 9mme
Go back to
Potassium Binding Sites List in 9mme
Potassium binding site 9 out
of 56 in the Roolfirm-Octamer-Wild Type
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 9 of Roolfirm-Octamer-Wild Type within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Y:K603
b:30.0
occ:1.00
|
OP2
|
Y:A24
|
2.7
|
9.7
|
1.0
|
N7
|
Y:G28
|
3.9
|
12.4
|
1.0
|
P
|
Y:A24
|
3.9
|
12.1
|
1.0
|
OP1
|
Y:A24
|
4.1
|
12.8
|
1.0
|
O6
|
Y:G28
|
4.2
|
7.4
|
1.0
|
OP1
|
Y:A23
|
4.5
|
11.8
|
1.0
|
N4
|
Y:C27
|
4.6
|
5.5
|
1.0
|
C5
|
Y:G28
|
4.7
|
6.7
|
1.0
|
C5
|
Y:C27
|
4.7
|
11.5
|
1.0
|
C6
|
Y:G28
|
4.8
|
5.0
|
1.0
|
O5'
|
Y:A24
|
4.8
|
7.4
|
1.0
|
C8
|
Y:G28
|
4.8
|
9.0
|
1.0
|
C4
|
Y:C27
|
4.9
|
6.7
|
1.0
|
N6
|
Y:A29
|
4.9
|
5.4
|
1.0
|
C8
|
Y:A24
|
5.0
|
7.2
|
1.0
|
|
Potassium binding site 10 out
of 56 in 9mme
Go back to
Potassium Binding Sites List in 9mme
Potassium binding site 10 out
of 56 in the Roolfirm-Octamer-Wild Type
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 10 of Roolfirm-Octamer-Wild Type within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Y:K604
b:30.0
occ:1.00
|
OP2
|
Y:A45
|
2.6
|
14.3
|
1.0
|
N7
|
Y:G46
|
3.3
|
8.8
|
1.0
|
O5'
|
Y:A45
|
3.3
|
17.6
|
1.0
|
O6
|
Y:G46
|
3.5
|
13.4
|
1.0
|
P
|
Y:A45
|
3.6
|
24.4
|
1.0
|
C8
|
Y:A45
|
3.9
|
13.7
|
1.0
|
C5
|
Y:G46
|
4.1
|
7.6
|
1.0
|
C6
|
Y:G46
|
4.1
|
11.8
|
1.0
|
N7
|
Y:A45
|
4.2
|
17.2
|
1.0
|
C8
|
Y:G46
|
4.3
|
12.9
|
1.0
|
C5'
|
Y:A45
|
4.4
|
14.8
|
1.0
|
OP2
|
Y:C44
|
4.6
|
5.0
|
1.0
|
C3'
|
Y:C44
|
4.7
|
8.1
|
1.0
|
O3'
|
Y:C44
|
4.7
|
11.3
|
1.0
|
OP1
|
Y:A45
|
4.7
|
15.2
|
1.0
|
O5'
|
Y:C44
|
4.8
|
5.0
|
1.0
|
O4'
|
Y:A45
|
4.9
|
7.8
|
1.0
|
N9
|
Y:A45
|
4.9
|
9.5
|
1.0
|
C3'
|
Y:A45
|
5.0
|
15.8
|
1.0
|
C4'
|
Y:A45
|
5.0
|
14.6
|
1.0
|
|
Reference:
X.B.Ling,
J.B.Ma,
W.W.Fang,
A.A.Korostelev.
Roolfirm-Octamer-Wild Type To Be Published.
Page generated: Sat Aug 9 19:19:00 2025
|