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Potassium in PDB 9is8: Cryo-Em Structure of AKT1-ATKC1(G315D)

Potassium Binding Sites:

The binding sites of Potassium atom in the Cryo-Em Structure of AKT1-ATKC1(G315D) (pdb code 9is8). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 3 binding sites of Potassium where determined in the Cryo-Em Structure of AKT1-ATKC1(G315D), PDB code: 9is8:
Jump to Potassium binding site number: 1; 2; 3;

Potassium binding site 1 out of 3 in 9is8

Go back to Potassium Binding Sites List in 9is8
Potassium binding site 1 out of 3 in the Cryo-Em Structure of AKT1-ATKC1(G315D)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Cryo-Em Structure of AKT1-ATKC1(G315D) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K902

b:30.0
occ:1.00
 O C:VAL254 2.4 40.8 1.0
O D:VAL254 2.6 41.7 1.0
O B:VAL290 2.6 40.7 1.0
O A:VAL254 2.7 40.6 1.0
O C:THR253 2.9 44.5 1.0
O D:THR253 3.0 44.6 1.0
O A:THR253 3.2 44.2 1.0
O B:THR289 3.2 44.0 1.0
K D:K902 3.2 30.0 1.0
C C:VAL254 3.4 40.8 1.0
C D:VAL254 3.5 41.7 1.0
C B:VAL290 3.6 40.7 1.0
C A:VAL254 3.7 40.6 1.0
CA C:VAL254 3.9 40.8 1.0
C C:THR253 3.9 44.5 1.0
C D:THR253 4.0 44.6 1.0
CA D:VAL254 4.0 41.7 1.0
CA B:VAL290 4.1 40.7 1.0
C B:THR289 4.2 44.0 1.0
CA A:VAL254 4.3 40.6 1.0
C A:THR253 4.3 44.2 1.0
N C:VAL254 4.4 40.8 1.0
N C:GLY255 4.4 41.3 1.0
O C:GLY255 4.5 41.3 1.0
N D:VAL254 4.5 41.7 1.0
N D:GLY255 4.5 42.2 1.0
K C:K903 4.6 30.0 1.0
O D:GLY255 4.6 42.2 1.0
O A:GLY255 4.7 42.5 1.0
N B:VAL290 4.7 40.7 1.0
N B:GLY291 4.7 41.6 1.0
CA C:GLY255 4.7 41.3 1.0
N A:GLY255 4.7 42.5 1.0
O B:GLY291 4.8 41.6 1.0
N A:VAL254 4.8 40.6 1.0
CA D:GLY255 4.9 42.2 1.0
C C:GLY255 4.9 41.3 1.0
CA A:GLY255 5.0 42.5 1.0

Potassium binding site 2 out of 3 in 9is8

Go back to Potassium Binding Sites List in 9is8
Potassium binding site 2 out of 3 in the Cryo-Em Structure of AKT1-ATKC1(G315D)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Cryo-Em Structure of AKT1-ATKC1(G315D) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K903

b:30.0
occ:1.00
 O C:GLY255 2.2 41.3 1.0
O D:GLY255 2.4 42.2 1.0
O B:GLY291 2.6 41.6 1.0
O A:GLY255 2.7 42.5 1.0
O C:TYR256 3.0 46.6 1.0
O D:TYR256 3.4 48.4 1.0
C C:GLY255 3.4 41.3 1.0
C C:TYR256 3.6 46.6 1.0
C D:GLY255 3.6 42.2 1.0
O A:TYR256 3.7 48.2 1.0
O B:TYR292 3.7 47.8 1.0
C B:GLY291 3.8 41.6 1.0
CA C:TYR256 3.9 46.6 1.0
C D:TYR256 3.9 48.4 1.0
C A:GLY255 3.9 42.5 1.0
O C:VAL254 4.0 40.8 1.0
O D:VAL254 4.0 41.7 1.0
N C:TYR256 4.1 46.6 1.0
C B:TYR292 4.1 47.8 1.0
O B:VAL290 4.2 40.7 1.0
C A:TYR256 4.2 48.2 1.0
CA D:TYR256 4.3 48.4 1.0
O A:VAL254 4.3 40.6 1.0
CA B:TYR292 4.4 47.8 1.0
N D:TYR256 4.4 48.4 1.0
CA A:TYR256 4.5 48.2 1.0
CA C:GLY255 4.5 41.3 1.0
K C:K902 4.6 30.0 1.0
N B:TYR292 4.6 47.8 1.0
N C:GLY257 4.6 55.5 1.0
CA D:GLY255 4.6 42.2 1.0
N D:GLY257 4.7 54.6 1.0
N A:TYR256 4.7 48.2 1.0
CA B:GLY291 4.8 41.6 1.0
N B:GLY293 4.9 54.1 1.0
CA A:GLY255 4.9 42.5 1.0
CA D:GLY257 4.9 54.6 1.0
C C:VAL254 5.0 40.8 1.0

Potassium binding site 3 out of 3 in 9is8

Go back to Potassium Binding Sites List in 9is8
Potassium binding site 3 out of 3 in the Cryo-Em Structure of AKT1-ATKC1(G315D)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Cryo-Em Structure of AKT1-ATKC1(G315D) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K902

b:30.0
occ:1.00
 O C:THR253 2.5 44.5 1.0
O D:THR253 2.6 44.6 1.0
O B:THR289 2.6 44.0 1.0
O A:THR253 2.7 44.2 1.0
OG1 D:THR253 2.8 44.6 1.0
K C:K902 3.2 30.0 1.0
C C:THR253 3.6 44.5 1.0
OG1 A:THR253 3.6 44.2 1.0
CB D:THR253 3.6 44.6 1.0
C D:THR253 3.6 44.6 1.0
OG1 C:THR253 3.6 44.5 1.0
OG1 B:THR289 3.6 44.0 1.0
CB C:THR253 3.6 44.5 1.0
C B:THR289 3.8 44.0 1.0
C A:THR253 3.8 44.2 1.0
CB A:THR253 3.8 44.2 1.0
CB B:THR289 3.9 44.0 1.0
CA D:THR253 4.2 44.6 1.0
CA C:THR253 4.2 44.5 1.0
CA A:THR253 4.5 44.2 1.0
CA B:THR289 4.5 44.0 1.0
N C:VAL254 4.5 40.8 1.0
N D:VAL254 4.6 41.7 1.0
CA C:VAL254 4.8 40.8 1.0
CA D:VAL254 4.8 41.7 1.0
N A:VAL254 4.8 40.6 1.0
N B:VAL290 4.8 40.7 1.0
CG2 D:THR253 4.8 44.6 1.0
CG2 C:THR253 4.9 44.5 1.0
O C:VAL254 4.9 40.8 1.0
O C:THR252 4.9 45.9 1.0
O B:VAL290 5.0 40.7 1.0
CA B:VAL290 5.0 40.7 1.0
O A:VAL254 5.0 40.6 1.0
CA A:VAL254 5.0 40.6 1.0

Reference:

Z.Zheng, Y.Qu, J.Chen, Y.Tang, D.Liu, Z.Huang, H.Shen. ATKC1 Inhibits AKT1 Activation Via Its Amino-Terminal Inhibitory Domain. Plant Commun. 01288 2025.
ISSN: ISSN 2590-3462
PubMed: 39980197
DOI: 10.1016/J.XPLC.2025.101288
Page generated: Sat Aug 9 19:13:07 2025

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