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Potassium in PDB 9esi: Structure of A B-State Intermediate Committed to Discard (Bd-II State)

Enzymatic activity of Structure of A B-State Intermediate Committed to Discard (Bd-II State)

All present enzymatic activity of Structure of A B-State Intermediate Committed to Discard (Bd-II State):
2.3.2.27; 3.6.4.13; 5.2.1.8;

Other elements in 9esi:

The structure of Structure of A B-State Intermediate Committed to Discard (Bd-II State) also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Zinc (Zn) 6 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Structure of A B-State Intermediate Committed to Discard (Bd-II State) (pdb code 9esi). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Structure of A B-State Intermediate Committed to Discard (Bd-II State), PDB code: 9esi:

Potassium binding site 1 out of 1 in 9esi

Go back to Potassium Binding Sites List in 9esi
Potassium binding site 1 out of 1 in the Structure of A B-State Intermediate Committed to Discard (Bd-II State)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Structure of A B-State Intermediate Committed to Discard (Bd-II State) within 5.0Å range:
probe atom residue distance (Å) B Occ
6:K103

b:182.4
occ:1.00
O6 6:G40 2.7 168.9 1.0
OP2 6:G48 2.8 103.8 1.0
OP1 6:U68 2.8 146.8 1.0
O5' 6:U68 3.0 146.8 1.0
P 6:U68 3.5 146.8 1.0
C6 6:G40 3.5 168.9 1.0
N7 6:G40 3.6 168.9 1.0
O4' 6:U68 3.9 146.8 1.0
P 6:G48 3.9 103.8 1.0
C5 6:G40 3.9 168.9 1.0
O3' 6:A67 4.1 186.1 1.0
OP1 6:G48 4.1 103.8 1.0
OP2 6:A47 4.1 103.7 1.0
C5' 6:U68 4.2 146.8 1.0
C5' 6:A47 4.4 103.7 1.0
C4' 6:U68 4.6 146.8 1.0
C6 6:U68 4.7 146.8 1.0
N1 6:G40 4.7 168.9 1.0
C5' 6:G48 4.8 103.8 1.0
O5' 6:G48 4.8 103.8 1.0
C8 6:G40 4.8 168.9 1.0
OP2 6:U68 4.8 146.8 1.0
C1' 6:U68 5.0 146.8 1.0

Reference:

K.Soni, K.Wild, I.M.Sinning. Structures of Aberrant Spliceosome Intermediates on Their Way to Disassembly To Be Published.
Page generated: Sat Feb 8 20:11:55 2025

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