Potassium in PDB 9esh: Structure of A B-State Intermediate Committed to Discard (Bd-I State)

Enzymatic activity of Structure of A B-State Intermediate Committed to Discard (Bd-I State)

All present enzymatic activity of Structure of A B-State Intermediate Committed to Discard (Bd-I State):
2.3.2.27; 3.6.4.13; 5.2.1.8;

Other elements in 9esh:

The structure of Structure of A B-State Intermediate Committed to Discard (Bd-I State) also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Zinc (Zn) 6 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Structure of A B-State Intermediate Committed to Discard (Bd-I State) (pdb code 9esh). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Structure of A B-State Intermediate Committed to Discard (Bd-I State), PDB code: 9esh:

Potassium binding site 1 out of 1 in 9esh

Go back to Potassium Binding Sites List in 9esh
Potassium binding site 1 out of 1 in the Structure of A B-State Intermediate Committed to Discard (Bd-I State)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Structure of A B-State Intermediate Committed to Discard (Bd-I State) within 5.0Å range:
probe atom residue distance (Å) B Occ
6:K103

b:95.3
occ:1.00
O6 6:G40 2.8 121.2 1.0
OP2 6:A47 3.0 86.9 1.0
OP2 6:G48 3.0 86.8 1.0
OP1 6:U68 3.3 109.2 1.0
C5' 6:A47 3.5 86.9 1.0
C6 6:G40 3.8 121.2 1.0
N7 6:G40 3.9 121.2 1.0
P 6:G48 4.0 86.8 1.0
O5' 6:A47 4.1 86.9 1.0
P 6:A47 4.1 86.9 1.0
OP1 6:G48 4.2 86.8 1.0
O5' 6:U68 4.2 109.2 1.0
C5 6:G40 4.2 121.2 1.0
P 6:U68 4.3 109.2 1.0
C4' 6:A47 4.7 86.9 1.0
C3' 6:A47 4.8 86.9 1.0
O3' 6:A47 4.9 86.9 1.0
O3' 6:A67 4.9 135.6 1.0

Reference:

K.Soni, K.Wild, I.M.Sinning. Structures of Aberrant Spliceosome Intermediates on Their Way to Disassembly To Be Published.
Page generated: Sat Feb 8 20:11:46 2025

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