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Potassium in PDB 9ed0: Human LARP1 Bound to the 40S Small Ribosomal Subunit

Enzymatic activity of Human LARP1 Bound to the 40S Small Ribosomal Subunit

All present enzymatic activity of Human LARP1 Bound to the 40S Small Ribosomal Subunit:
4.2.99.18;

Other elements in 9ed0:

The structure of Human LARP1 Bound to the 40S Small Ribosomal Subunit also contains other interesting chemical elements:

Magnesium (Mg) 92 atoms
Zinc (Zn) 3 atoms

Potassium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 71;

Binding sites:

The binding sites of Potassium atom in the Human LARP1 Bound to the 40S Small Ribosomal Subunit (pdb code 9ed0). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 71 binding sites of Potassium where determined in the Human LARP1 Bound to the 40S Small Ribosomal Subunit, PDB code: 9ed0:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 71 in 9ed0

Go back to Potassium Binding Sites List in 9ed0
Potassium binding site 1 out of 71 in the Human LARP1 Bound to the 40S Small Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Human LARP1 Bound to the 40S Small Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
2:K1901

b:46.1
occ:1.00
O L:LYS98 2.7 23.5 1.0
OD1 L:ASN100 2.7 36.7 1.0
O2 2:C660 2.9 23.4 1.0
O3' 2:G420 3.0 27.9 1.0
O2' 2:G420 3.1 28.0 1.0
C2 2:C660 3.6 17.6 1.0
CG L:ASN100 3.6 32.5 1.0
O L:ARG97 3.6 27.1 1.0
C L:LYS98 3.6 18.4 1.0
OP1 2:G421 3.7 30.0 1.0
N3 2:C660 3.8 13.9 1.0
P 2:G421 3.9 30.8 1.0
ND2 L:ASN100 3.9 32.4 1.0
C3' 2:G420 3.9 23.5 1.0
CA L:LYS98 4.0 16.7 1.0
C2' 2:G420 4.0 22.0 1.0
O5' 2:G421 4.1 26.4 1.0
C4' 2:G420 4.4 26.8 1.0
C L:ARG97 4.6 22.8 1.0
N L:TYR99 4.6 19.3 1.0
N1 2:C660 4.7 14.6 1.0
N L:ASN100 4.7 15.5 1.0
CB L:ASN100 4.8 19.9 1.0
N L:LYS98 4.8 19.2 1.0
C4 2:C660 4.9 12.8 1.0
CA L:TYR99 5.0 14.8 1.0

Potassium binding site 2 out of 71 in 9ed0

Go back to Potassium Binding Sites List in 9ed0
Potassium binding site 2 out of 71 in the Human LARP1 Bound to the 40S Small Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Human LARP1 Bound to the 40S Small Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
2:K1902

b:75.1
occ:1.00
O5' 2:C17 2.8 21.0 1.0
OP1 2:C17 2.9 25.3 1.0
O2' 2:G1165 2.9 25.6 1.0
O3' 2:G1165 3.4 25.8 1.0
P 2:C17 3.5 27.1 1.0
O2' 2:U657 3.7 29.8 1.0
K 2:K2058 3.7 74.9 1.0
C5' 2:C17 3.7 16.8 1.0
C2' 2:G1165 4.0 17.9 1.0
OP2 2:G1166 4.0 39.7 1.0
P 2:G1166 4.2 32.3 1.0
C1' 2:G1165 4.2 16.9 1.0
O5' 2:G1166 4.2 27.0 1.0
C3' 2:G1165 4.3 23.5 1.0
C5' 2:G1166 4.4 19.1 1.0
O2 2:U657 4.5 29.2 1.0
OP2 2:C17 4.5 25.8 1.0
C1' 2:U657 4.6 21.3 1.0
O3' 2:G16 4.6 24.4 1.0
C2' 2:U657 4.7 23.2 1.0
C4' 2:C17 4.9 14.3 1.0

Potassium binding site 3 out of 71 in 9ed0

Go back to Potassium Binding Sites List in 9ed0
Potassium binding site 3 out of 71 in the Human LARP1 Bound to the 40S Small Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Human LARP1 Bound to the 40S Small Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
2:K1903

b:51.0
occ:1.00
O2' 2:G1102 2.9 30.4 1.0
OP1 2:C994 3.0 38.0 1.0
O3' 2:G993 3.1 29.2 1.0
O4' 2:C1103 3.3 27.8 1.0
P 2:C994 3.7 30.6 1.0
C2' 2:G1102 3.8 29.3 1.0
C1' 2:C1103 4.0 22.9 1.0
N3 2:G1102 4.0 26.6 1.0
C3' 2:G993 4.2 23.9 1.0
C1' 2:G1102 4.2 27.4 1.0
C4' 2:G993 4.2 20.4 1.0
C4' 2:C1103 4.2 23.7 1.0
C5' 2:G993 4.3 23.9 1.0
OP2 2:C994 4.5 35.0 1.0
N2 2:G1102 4.6 27.4 1.0
C5' 2:C1103 4.7 26.6 1.0
N1 2:C1103 4.8 19.8 1.0
C2 2:G1102 4.8 22.8 1.0
O5' 2:C994 4.9 23.6 1.0
C4 2:G1102 4.9 23.0 1.0

Potassium binding site 4 out of 71 in 9ed0

Go back to Potassium Binding Sites List in 9ed0
Potassium binding site 4 out of 71 in the Human LARP1 Bound to the 40S Small Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Human LARP1 Bound to the 40S Small Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
2:K1904

b:86.5
occ:1.00
O6 2:G613 2.9 71.9 1.0
O4 2:U612 3.1 48.8 1.0
C6 2:G613 3.7 59.7 1.0
C5' 2:A628 3.7 87.2 1.0
OP2 2:A628 3.8 98.5 1.0
N1 2:G613 3.9 57.9 1.0
C4 2:U612 4.0 41.2 1.0
C5 2:U612 4.2 40.0 1.0
OP2 2:G611 4.5 66.7 1.0
O5' 2:A628 4.6 109.0 1.0
MG 2:MG2011 4.7 55.6 1.0
P 2:A628 4.7 124.7 1.0
N7 2:G611 4.7 44.4 1.0
C4' 2:A628 4.8 97.3 1.0

Potassium binding site 5 out of 71 in 9ed0

Go back to Potassium Binding Sites List in 9ed0
Potassium binding site 5 out of 71 in the Human LARP1 Bound to the 40S Small Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Human LARP1 Bound to the 40S Small Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
2:K1905

b:52.9
occ:1.00
O6 2:G1334 2.7 36.4 1.0
O6 2:G1330 2.8 34.9 1.0
O4 2:U1496 3.4 41.9 1.0
N2 2:G1335 3.5 30.6 1.0
C6 2:G1334 3.7 31.1 1.0
O2 2:U1492 3.8 32.4 1.0
N1 2:G1334 3.8 27.4 1.0
C6 2:G1330 3.9 27.5 1.0
C2 2:G1335 3.9 26.3 1.0
N1 2:G1335 4.0 21.4 1.0
N6 2:A1498 4.0 35.2 1.0
C4 2:U1496 4.2 43.2 1.0
C5 2:U1496 4.3 43.2 1.0
N7 2:G1495 4.3 39.2 1.0
N1 2:G1330 4.3 26.6 1.0
N7 2:A1498 4.4 35.7 1.0
O2' 2:U1492 4.5 40.6 1.0
C6 2:A1498 4.6 32.3 1.0
C2' 2:U1492 4.6 32.3 1.0
C2 2:U1492 4.6 26.7 1.0
C5 2:A1498 4.7 28.8 1.0
N3 2:G1335 4.7 25.7 1.0
OP1 2:G1495 4.9 53.5 1.0
C6 2:G1335 4.9 24.8 1.0
O6 2:G1495 4.9 43.9 1.0
O4' 2:C1493 4.9 37.5 1.0
C5 2:G1495 5.0 33.8 1.0

Potassium binding site 6 out of 71 in 9ed0

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Potassium binding site 6 out of 71 in the Human LARP1 Bound to the 40S Small Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Human LARP1 Bound to the 40S Small Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
2:K1906

b:55.8
occ:1.00
OP1 2:U97 2.8 38.6 1.0
OP1 2:A42 3.1 42.5 1.0
OP1 2:G41 3.2 45.9 1.0
O5' 2:A42 3.4 23.8 1.0
O5' 2:G41 3.9 44.9 1.0
P 2:A42 3.9 40.2 1.0
P 2:U97 4.1 22.9 1.0
P 2:G41 4.2 44.4 1.0
O5' 2:U97 4.4 23.2 1.0
K 2:K1915 4.6 75.7 1.0
O4' 2:A42 4.6 25.0 1.0
C5' 2:A42 4.7 22.6 1.0
C5' 2:U97 4.8 21.4 1.0
O3' 2:A40 4.8 32.8 1.0
OP2 2:U97 4.8 27.6 1.0
OP2 2:A42 4.9 43.2 1.0

Potassium binding site 7 out of 71 in 9ed0

Go back to Potassium Binding Sites List in 9ed0
Potassium binding site 7 out of 71 in the Human LARP1 Bound to the 40S Small Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Human LARP1 Bound to the 40S Small Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
2:K1907

b:42.0
occ:1.00
O6 2:G446 2.9 16.3 1.0
OP2 2:G90 3.0 24.1 1.0
OP2 2:A91 3.2 22.1 1.0
N7 2:A91 3.2 16.4 1.0
N1 2:A92 3.5 14.3 1.0
O5' 2:G90 3.5 31.2 1.0
P 2:G90 3.7 35.9 1.0
C2 2:A92 3.8 13.8 1.0
K 2:K1947 3.9 53.0 1.0
C8 2:A91 3.9 15.0 1.0
C6 2:G446 4.0 13.2 1.0
C8 2:G90 4.3 17.7 1.0
N1 2:G446 4.3 10.9 1.0
OP1 2:G90 4.3 29.0 1.0
C5 2:A91 4.4 14.0 1.0
N7 2:G90 4.5 17.4 1.0
C3' 2:G90 4.5 17.7 1.0
C6 2:A92 4.6 12.8 1.0
P 2:A91 4.6 24.8 1.0
C5' 2:G90 4.6 23.5 1.0
N6 2:A91 4.7 15.9 1.0
N6 2:A92 4.9 16.6 1.0
O2' 2:G444 4.9 22.6 1.0
O5' 2:A91 4.9 21.8 1.0
N3 2:A92 4.9 15.6 1.0

Potassium binding site 8 out of 71 in 9ed0

Go back to Potassium Binding Sites List in 9ed0
Potassium binding site 8 out of 71 in the Human LARP1 Bound to the 40S Small Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Human LARP1 Bound to the 40S Small Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
2:K1908

b:50.0
occ:1.00
O2 2:PSU105 2.7 28.8 1.0
N1 2:A103 2.9 26.3 1.0
O2 2:C356 2.9 36.3 1.0
C2 2:A103 3.1 24.9 1.0
N2 2:G355 3.4 19.0 1.0
C2 2:G355 3.5 19.4 1.0
C2 2:C356 3.5 27.2 1.0
N1 2:G355 3.6 17.8 1.0
C2 2:PSU105 3.7 25.7 1.0
O2 2:C106 3.8 24.7 1.0
N3 2:C356 3.9 21.9 1.0
N3 2:G355 4.0 20.6 1.0
N3 2:PSU105 4.1 21.1 1.0
C6 2:A103 4.1 25.1 1.0
N3 2:C106 4.2 17.4 1.0
C2 2:C106 4.2 18.4 1.0
N1 2:C356 4.3 21.5 1.0
N3 2:A103 4.3 26.6 1.0
C6 2:G355 4.3 18.3 1.0
O4' 2:C356 4.4 31.7 1.0
C1' 2:C356 4.5 28.4 1.0
N6 2:A103 4.6 27.2 1.0
C4 2:G355 4.6 16.8 1.0
C5 2:G355 4.8 15.8 1.0
N6 2:A104 4.8 23.5 1.0
N1 2:PSU105 4.9 23.3 1.0
C4 2:C356 4.9 27.4 1.0
O6 2:G355 5.0 25.2 1.0

Potassium binding site 9 out of 71 in 9ed0

Go back to Potassium Binding Sites List in 9ed0
Potassium binding site 9 out of 71 in the Human LARP1 Bound to the 40S Small Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Human LARP1 Bound to the 40S Small Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
2:K1909

b:55.3
occ:1.00
O6 2:G412 2.8 23.1 1.0
O2' 2:G425 3.2 28.1 1.0
N7 2:G412 3.4 10.3 1.0
N3 2:G425 3.4 13.9 1.0
O6 2:G411 3.5 18.1 1.0
C6 2:G412 3.6 12.5 1.0
N2 2:G425 3.7 10.0 1.0
C2' 2:G425 3.7 19.4 1.0
C5 2:G412 3.8 8.7 1.0
C2 2:G425 4.0 12.4 1.0
C6 2:G411 4.0 11.1 1.0
N7 2:G411 4.1 10.7 1.0
MG 2:MG2006 4.2 28.8 1.0
C5 2:G411 4.3 7.8 1.0
C1' 2:G425 4.4 14.1 1.0
C4 2:G425 4.5 13.0 1.0
C8 2:G412 4.6 12.3 1.0
N3 2:G413 4.9 16.4 1.0
N9 2:G425 4.9 11.6 1.0
N1 2:G412 4.9 7.4 1.0

Potassium binding site 10 out of 71 in 9ed0

Go back to Potassium Binding Sites List in 9ed0
Potassium binding site 10 out of 71 in the Human LARP1 Bound to the 40S Small Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Human LARP1 Bound to the 40S Small Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
2:K1910

b:64.0
occ:1.00
O2 2:PSU109 2.8 30.6 1.0
O6 2:G108 3.1 21.6 1.0
N7 2:G108 3.3 23.8 1.0
C2 2:PSU109 3.6 24.5 1.0
C6 2:G108 3.8 19.5 1.0
N7 2:A107 3.8 19.8 1.0
C5 2:G108 3.9 20.4 1.0
N6 2:A107 4.2 14.0 1.0
C5 2:A107 4.2 16.7 1.0
N3 2:PSU109 4.3 22.5 1.0
N1 2:PSU109 4.3 25.1 1.0
C6 2:A107 4.4 16.6 1.0
C8 2:G108 4.4 23.1 1.0
C8 2:A107 4.5 21.1 1.0
O4 2:U352 4.6 23.7 1.0

Reference:

E.Wolin, J.K.Guo, M.R.Blanco, I.N.Goronzy, D.Gorhe, W.Dong, A.A.Perez, A.Keskin, E.Valenzuela, A.A.Abdou, C.R.Urbinati, R.Kaufhold, H.T.Rube, J.Brito Querido, M.Guttman, M.Jovanovic. Spidr Enables Multiplexed Mapping of Rna-Protein Interactions and Uncovers A Mechanism For Selective Translational Suppression Upon Cell Stress Cell(Cambridge,Mass.) 2025.
ISSN: ISSN 0092-8674
DOI: 10.1016/J.CELL.2025.06.042
Page generated: Sat Aug 9 18:50:37 2025

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