Potassium in PDB 9dig: Rous Sarcoma Virus Frameshifting Pseudoknot Rna Em Straight Dimer

The structure of Rous Sarcoma Virus Frameshifting Pseudoknot Rna Em Straight Dimer also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Potassium atom in the Rous Sarcoma Virus Frameshifting Pseudoknot Rna Em Straight Dimer (pdb code 9dig). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the Rous Sarcoma Virus Frameshifting Pseudoknot Rna Em Straight Dimer, PDB code: 9dig:
Jump to Potassium binding site number: 1; 2; 3; 4;

Potassium binding site 1 out of 4 in the Rous Sarcoma Virus Frameshifting Pseudoknot Rna Em Straight Dimer


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Rous Sarcoma Virus Frameshifting Pseudoknot Rna Em Straight Dimer within 5.0Å range: probe atom residue distance (Å) B Occ A:K201 b:30.0 occ:1.00 OP2 A:A94 2.6 65.1 1.0 O6 A:G96 3.7 76.4 1.0 P A:A94 3.9 65.1 1.0 N7 A:A95 4.4 59.9 1.0 OP1 A:A94 4.4 65.1 1.0 N3 B:C91 4.5 88.2 1.0 C5' A:A94 4.7 65.1 1.0 OP2 A:A95 4.7 59.9 1.0 C6 A:G96 4.7 76.4 1.0 O2 B:C91 4.8 88.2 1.0 O5' A:A94 4.8 65.1 1.0 N4 B:C90 4.8 97.5 1.0 N6 A:A95 4.9 59.9 1.0 N7 A:A94 4.9 65.1 1.0 O3' A:G93 4.9 71.4 1.0 C8 A:A94 4.9 65.1 1.0 N7 A:G96 5.0 76.4 1.0

Potassium binding site 2 out of 4 in the Rous Sarcoma Virus Frameshifting Pseudoknot Rna Em Straight Dimer


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Rous Sarcoma Virus Frameshifting Pseudoknot Rna Em Straight Dimer within 5.0Å range: probe atom residue distance (Å) B Occ A:K202 b:30.0 occ:1.00 O4 A:U98 3.7 89.3 1.0 OP1 B:C86 4.5 99.8 1.0 O6 A:G97 4.6 83.5 1.0 N7 A:G96 4.6 76.4 1.0 N7 A:G97 4.6 83.5 1.0 OP2 A:A95 4.7 59.9 1.0 O6 A:G96 4.8 76.4 1.0 C4 A:U98 4.9 89.3 1.0

Potassium binding site 3 out of 4 in the Rous Sarcoma Virus Frameshifting Pseudoknot Rna Em Straight Dimer


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Rous Sarcoma Virus Frameshifting Pseudoknot Rna Em Straight Dimer within 5.0Å range: probe atom residue distance (Å) B Occ B:K201 b:30.0 occ:1.00 OP2 B:A94 2.5 65.1 1.0 O6 B:G96 3.8 76.4 1.0 P B:A94 3.8 65.1 1.0 OP1 B:A94 4.3 65.1 1.0 N7 B:A95 4.4 59.9 1.0 N3 A:C91 4.5 88.2 1.0 C5' B:A94 4.6 65.1 1.0 OP2 B:A95 4.6 59.9 1.0 O5' B:A94 4.7 65.1 1.0 C6 B:G96 4.7 76.4 1.0 N4 A:C90 4.8 97.5 1.0 O2 A:C91 4.8 88.2 1.0 O3' B:G93 4.9 71.4 1.0 N7 B:A94 4.9 65.1 1.0 N6 B:A95 4.9 59.9 1.0 C8 B:A94 4.9 65.1 1.0

Potassium binding site 4 out of 4 in the Rous Sarcoma Virus Frameshifting Pseudoknot Rna Em Straight Dimer


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Rous Sarcoma Virus Frameshifting Pseudoknot Rna Em Straight Dimer within 5.0Å range: probe atom residue distance (Å) B Occ B:K202 b:30.0 occ:1.00 O4 B:U98 3.7 89.3 1.0 OP1 A:C86 4.5 99.8 1.0 O6 B:G97 4.6 83.5 1.0 N7 B:G96 4.6 76.4 1.0 N7 B:G97 4.7 83.5 1.0 OP2 B:A95 4.7 59.9 1.0 O6 B:G96 4.8 76.4 1.0 C4 B:U98 4.9 89.3 1.0

C.P.Jones, A.R.Ferre-D'amare. Structural Switching Dynamically Controls the Doubly Pseudoknotted Rous Sarcoma Virus Programmed Ribosomal Frameshifting Element Proc.Natl.Acad.Sci.Usa 2025.
ISSN: ESSN 1091-6490