Potassium in PDB 8x70: The Crystal Structure of IFI16 From Biortus.

Protein crystallography data

The structure of The Crystal Structure of IFI16 From Biortus., PDB code: 8x70 was solved by F.Wang, W.Cheng, Z.Lv, Q.Meng, J.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.52 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 40.4, 87.418, 111.214, 90, 99.27, 90
R / Rfree (%) 20.1 / 24.7

Other elements in 8x70:

The structure of The Crystal Structure of IFI16 From Biortus. also contains other interesting chemical elements:

Bromine (Br) 1 atom

Potassium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Potassium atom in the The Crystal Structure of IFI16 From Biortus. (pdb code 8x70). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 14 binding sites of Potassium where determined in the The Crystal Structure of IFI16 From Biortus., PDB code: 8x70:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 14 in 8x70

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Potassium binding site 1 out of 14 in the The Crystal Structure of IFI16 From Biortus.


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Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of The Crystal Structure of IFI16 From Biortus. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K404

b:22.0
occ:1.00
 CB A:LYS214 4.0 25.9 1.0
CD A:LYS214 4.3 34.2 1.0
CD A:PRO215 4.4 23.4 1.0
CG A:PRO215 4.5 23.8 1.0
CG A:LYS214 4.7 29.2 1.0
O A:PRO215 5.0 23.3 1.0
O A:HOH560 5.0 36.7 1.0

Potassium binding site 2 out of 14 in 8x70

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Potassium binding site 2 out of 14 in the The Crystal Structure of IFI16 From Biortus.


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Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of The Crystal Structure of IFI16 From Biortus. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K405

b:18.6
occ:1.00
 OG A:SER211 3.0 21.0 1.0
O A:HOH686 3.3 27.1 1.0
OG1 A:THR232 3.4 19.7 1.0
O A:SER211 3.6 18.0 1.0
O A:HOH600 3.7 38.7 1.0
N A:THR232 3.7 16.2 1.0
O A:HOH682 3.7 30.6 1.0
C A:SER211 3.7 19.0 1.0
O A:HOH638 3.8 36.2 1.0
C A:ALA231 3.8 16.2 1.0
CE2 A:PHE365 3.8 20.3 1.0
CA A:ALA231 3.9 16.1 1.0
CB A:SER211 3.9 20.6 1.0
N A:THR212 3.9 19.4 1.0
CA A:THR212 4.0 20.5 1.0
O A:HIS230 4.1 16.9 1.0
C A:THR212 4.1 20.1 1.0
N A:ALA231 4.1 16.9 1.0
CB A:THR232 4.1 18.0 1.0
C A:HIS230 4.1 16.5 1.0
N A:THR213 4.2 19.0 1.0
CG2 A:THR213 4.3 17.4 1.0
CA A:SER211 4.4 20.3 1.0
O A:ALA231 4.4 16.3 1.0
CA A:THR232 4.5 16.9 1.0
CB A:HIS230 4.6 16.3 1.0
CD2 A:PHE365 4.6 19.2 1.0
O A:THR212 4.6 19.8 1.0
CZ A:PHE365 4.7 21.1 1.0

Potassium binding site 3 out of 14 in 8x70

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Potassium binding site 3 out of 14 in the The Crystal Structure of IFI16 From Biortus.


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Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of The Crystal Structure of IFI16 From Biortus. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K406

b:28.0
occ:1.00
 O A:HOH560 2.6 36.7 1.0
O A:HOH534 3.1 33.3 1.0
N A:GLU217 3.5 20.1 1.0
CA A:PHE216 3.6 20.4 1.0
CB A:PHE216 3.7 20.4 1.0
C A:PHE216 4.1 17.6 1.0
CB A:GLU217 4.3 23.6 1.0
O A:PRO215 4.4 23.3 1.0
CA A:GLU217 4.5 21.2 1.0
N A:PHE216 4.8 19.4 1.0
O A:GLU217 4.8 21.1 1.0

Potassium binding site 4 out of 14 in 8x70

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Potassium binding site 4 out of 14 in the The Crystal Structure of IFI16 From Biortus.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of The Crystal Structure of IFI16 From Biortus. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K407

b:37.0
occ:1.00
 OG1 B:THR237 3.5 27.3 1.0
NE2 A:GLN236 3.5 35.2 1.0
N A:GLU289 3.6 28.6 1.0
O B:THR237 3.8 24.6 1.0
CB B:THR237 3.8 24.7 1.0
CA A:PHE288 4.1 31.2 1.0
CB A:PHE288 4.1 31.1 1.0
O A:GLU289 4.1 23.0 1.0
NE2 B:GLN238 4.1 30.4 1.0
O A:HOH697 4.2 50.0 1.0
CD B:GLN238 4.2 28.8 1.0
C B:THR237 4.3 23.6 1.0
CB B:GLN238 4.3 23.9 1.0
C A:PHE288 4.3 28.8 1.0
CD A:GLN236 4.4 33.0 1.0
CB A:GLU289 4.4 34.0 1.0
CA A:GLU289 4.4 29.6 1.0
CG B:GLN238 4.5 26.3 1.0
OE1 B:GLN238 4.6 31.0 1.0
O B:HOH553 4.7 38.5 1.0
OE1 A:GLN236 4.7 37.5 1.0
CA B:THR237 4.7 23.6 1.0
C A:GLU289 4.7 25.7 1.0
CG A:GLU289 4.8 38.5 1.0
O B:HOH535 4.9 24.9 1.0
CG2 B:THR237 4.9 24.0 1.0
N B:GLN238 5.0 23.6 1.0

Potassium binding site 5 out of 14 in 8x70

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Potassium binding site 5 out of 14 in the The Crystal Structure of IFI16 From Biortus.


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Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of The Crystal Structure of IFI16 From Biortus. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K408

b:25.9
occ:1.00
 O B:HOH660 3.3 38.5 1.0
NE2 B:GLN236 3.6 21.6 1.0
OD1 A:ASN296 3.8 27.8 1.0
CD A:LYS293 3.8 26.0 1.0
CB A:ASN292 3.8 24.3 1.0
N A:LYS293 3.9 19.6 1.0
CE A:LYS293 3.9 28.9 1.0
CG A:LYS293 4.0 23.6 1.0
C A:ASN292 4.1 20.3 1.0
NZ A:LYS293 4.2 31.2 1.0
CA A:LYS293 4.2 20.5 1.0
O A:ASN292 4.4 21.5 1.0
O A:HOH678 4.4 38.9 1.0
CA A:ASN292 4.5 22.6 1.0
CD B:GLN236 4.6 21.8 1.0
OE1 B:GLN236 4.6 21.8 1.0
CB A:LYS293 4.7 22.0 1.0
CG A:ASN296 4.9 21.8 1.0

Potassium binding site 6 out of 14 in 8x70

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Potassium binding site 6 out of 14 in the The Crystal Structure of IFI16 From Biortus.


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Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of The Crystal Structure of IFI16 From Biortus. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K409

b:30.8
occ:1.00
 O A:HOH692 2.9 45.1 1.0
N A:MET382 3.2 19.2 1.0
CB A:GLU381 3.8 19.1 1.0
CA A:GLU381 3.9 18.0 1.0
CB A:MET382 3.9 21.8 1.0
C A:GLU381 4.0 18.2 1.0
CA A:MET382 4.1 19.2 1.0
CG A:GLU381 4.1 20.3 1.0
O A:HOH694 4.1 43.5 1.0
CG A:MET382 4.1 24.7 1.0
CD A:GLU381 4.5 21.7 1.0
O A:HOH571 4.7 35.5 1.0
SD A:MET382 4.7 32.2 1.0
OE1 A:GLU381 4.9 20.4 1.0
OE2 A:GLU381 5.0 21.8 1.0

Potassium binding site 7 out of 14 in 8x70

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Potassium binding site 7 out of 14 in the The Crystal Structure of IFI16 From Biortus.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of The Crystal Structure of IFI16 From Biortus. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K401

b:21.1
occ:1.00
 O B:HOH680 3.0 34.1 1.0
OG B:SER211 3.2 23.2 1.0
OG1 B:THR232 3.4 24.5 1.0
O B:HOH632 3.6 28.3 1.0
O B:SER211 3.7 20.3 1.0
N B:THR232 3.7 18.7 1.0
CE2 B:PHE365 3.7 21.7 1.0
C B:SER211 3.8 20.9 1.0
C B:ALA231 3.8 19.5 1.0
CA B:THR212 3.8 21.5 1.0
O B:HIS230 3.9 17.0 1.0
N B:THR212 3.9 20.7 1.0
CA B:ALA231 3.9 18.8 1.0
C B:THR212 3.9 20.9 1.0
CB B:SER211 4.0 22.4 1.0
N B:THR213 4.1 18.7 1.0
C B:HIS230 4.1 17.5 1.0
N B:ALA231 4.1 18.3 1.0
CB B:THR232 4.2 21.6 1.0
CG2 B:THR213 4.3 19.3 1.0
CZ B:PHE365 4.5 21.1 1.0
O B:ALA231 4.5 19.1 1.0
CA B:SER211 4.5 22.6 1.0
O B:THR212 4.5 21.5 1.0
CB B:HIS230 4.6 16.4 1.0
CA B:THR232 4.6 19.3 1.0
CD2 B:PHE365 4.6 21.6 1.0
O B:HOH613 4.9 38.7 1.0
CA B:HIS230 5.0 16.3 1.0

Potassium binding site 8 out of 14 in 8x70

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Potassium binding site 8 out of 14 in the The Crystal Structure of IFI16 From Biortus.


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Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of The Crystal Structure of IFI16 From Biortus. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K402

b:30.6
occ:1.00
 O B:HOH688 3.2 37.7 1.0
O B:HOH641 3.5 42.5 1.0
NZ C:LYS303 3.6 34.2 1.0
N B:ASN285 3.7 36.4 1.0
C B:GLY283 3.9 32.1 1.0
CA B:GLY283 3.9 33.1 1.0
CB B:ASN285 3.9 38.8 1.0
CG B:GLN286 4.0 29.7 1.0
NE2 B:GLN286 4.0 31.4 1.0
CA B:ASN285 4.1 36.1 1.0
OD1 C:ASP339 4.1 28.9 1.0
N B:PRO284 4.1 37.4 1.0
CE C:LYS303 4.1 31.8 1.0
O B:GLY283 4.2 28.8 1.0
C B:ASN285 4.3 32.7 1.0
N B:GLN286 4.3 29.6 1.0
CD B:PRO284 4.3 40.3 1.0
N B:GLY283 4.4 32.8 1.0
CD C:LYS303 4.4 30.4 1.0
O B:HOH526 4.6 37.9 1.0
CD B:GLN286 4.6 30.1 1.0
C B:PRO284 4.7 37.8 1.0
O B:HOH669 4.7 50.2 1.0
CG B:PRO284 4.8 40.3 1.0
CB B:GLN286 4.9 30.2 1.0
O B:ASN285 4.9 32.8 1.0
CA B:PRO284 5.0 37.4 1.0

Potassium binding site 9 out of 14 in 8x70

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Potassium binding site 9 out of 14 in the The Crystal Structure of IFI16 From Biortus.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of The Crystal Structure of IFI16 From Biortus. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K401

b:30.2
occ:1.00
 O C:HOH658 2.8 40.2 1.0
OG C:SER211 3.2 28.9 1.0
O C:HOH645 3.3 23.5 1.0
OG1 C:THR232 3.4 24.9 1.0
O C:SER211 3.6 21.9 1.0
CE2 C:PHE365 3.7 23.0 1.0
N C:THR232 3.7 21.5 1.0
C C:SER211 3.7 23.4 1.0
C C:ALA231 3.8 20.0 1.0
CA C:ALA231 3.8 19.8 1.0
O C:HIS230 3.8 20.7 1.0
CA C:THR212 3.9 22.8 1.0
N C:THR212 3.9 22.3 1.0
C C:THR212 4.0 21.7 1.0
CB C:SER211 4.0 25.5 1.0
C C:HIS230 4.0 20.6 1.0
N C:THR213 4.1 20.9 1.0
N C:ALA231 4.1 20.7 1.0
CG2 C:THR213 4.2 20.0 1.0
CB C:THR232 4.3 22.7 1.0
O C:ALA231 4.5 19.0 1.0
CZ C:PHE365 4.5 21.9 1.0
CA C:SER211 4.5 25.2 1.0
CD2 C:PHE365 4.5 22.2 1.0
CB C:HIS230 4.5 20.5 1.0
O C:THR212 4.5 21.4 1.0
CA C:THR232 4.6 21.7 1.0
CA C:HIS230 4.9 19.8 1.0

Potassium binding site 10 out of 14 in 8x70

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Potassium binding site 10 out of 14 in the The Crystal Structure of IFI16 From Biortus.


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Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of The Crystal Structure of IFI16 From Biortus. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K405

b:23.6
occ:1.00
 O C:HOH582 3.1 32.6 1.0
ND2 C:ASN314 3.5 24.4 1.0
O C:HOH697 3.6 38.1 1.0
CG C:GLN310 3.8 20.8 1.0
NZ A:LYS309 3.8 41.6 1.0
CB C:GLN310 3.9 19.6 1.0
CE A:LYS309 3.9 37.5 1.0
CD1 C:LEU302 4.0 32.4 1.0
NE2 C:GLN310 4.0 22.5 1.0
CB C:ASN314 4.2 20.6 1.0
CD A:LYS309 4.3 34.6 1.0
CG C:ASN314 4.3 23.0 1.0
CB A:LYS309 4.4 25.5 1.0
CD C:GLN310 4.4 21.4 1.0
CD2 C:LEU307 4.5 28.5 1.0
CG2 C:VAL316 4.6 21.2 1.0
O C:ILE315 4.8 22.2 1.0
CG A:LYS309 5.0 29.6 1.0

Reference:

F.Wang, W.Cheng, Z.Lv, Q.Meng, J.Wang. The Crystal Structure of IFI16 From Biortus. To Be Published.
Page generated: Tue Aug 13 01:15:32 2024

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