Potassium in PDB 8wux: Cryo-Em Structure of H. Thermophilus Groel-Groes Bullet Complex

Enzymatic activity of Cryo-Em Structure of H. Thermophilus Groel-Groes Bullet Complex

All present enzymatic activity of Cryo-Em Structure of H. Thermophilus Groel-Groes Bullet Complex:
5.6.1.7;

Other elements in 8wux:

The structure of Cryo-Em Structure of H. Thermophilus Groel-Groes Bullet Complex also contains other interesting chemical elements:

Magnesium (Mg) 14 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Cryo-Em Structure of H. Thermophilus Groel-Groes Bullet Complex (pdb code 8wux). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 7 binding sites of Potassium where determined in the Cryo-Em Structure of H. Thermophilus Groel-Groes Bullet Complex, PDB code: 8wux:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7;

Potassium binding site 1 out of 7 in 8wux

Go back to Potassium Binding Sites List in 8wux
Potassium binding site 1 out of 7 in the Cryo-Em Structure of H. Thermophilus Groel-Groes Bullet Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Cryo-Em Structure of H. Thermophilus Groel-Groes Bullet Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
H:K602

b:95.6
occ:1.00
 O H:THR30 2.7 84.2 1.0
O H:LYS51 2.8 96.1 1.0
O1A H:ANP603 2.9 88.0 1.0
O H:GLY32 2.9 92.5 1.0
C H:THR30 3.9 77.3 1.0
C H:LYS51 4.0 89.5 1.0
C H:GLY32 4.1 86.9 1.0
PA H:ANP603 4.1 97.0 1.0
N H:GLY32 4.3 82.1 1.0
O H:ASP52 4.6 102.7 1.0
O2A H:ANP603 4.6 104.3 1.0
C H:LEU31 4.7 80.9 1.0
O5' H:ANP603 4.7 94.3 1.0
OD1 H:ASN153 4.7 150.1 1.0
CB H:THR30 4.7 77.2 1.0
CB H:LYS51 4.7 81.6 1.0
CA H:ASP52 4.8 92.8 1.0
CA H:LEU31 4.8 75.6 1.0
CA H:THR30 4.8 75.2 1.0
N H:LEU31 4.8 75.6 1.0
CA H:GLY32 4.9 83.6 1.0
C H:ASP52 4.9 95.9 1.0
OG1 H:THR30 4.9 79.0 1.0
N H:ASP52 4.9 87.9 1.0
N H:GLY35 4.9 84.7 1.0
CA H:LYS51 5.0 82.5 1.0

Potassium binding site 2 out of 7 in 8wux

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Potassium binding site 2 out of 7 in the Cryo-Em Structure of H. Thermophilus Groel-Groes Bullet Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Cryo-Em Structure of H. Thermophilus Groel-Groes Bullet Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
I:K602

b:94.6
occ:1.00
 O I:THR30 2.7 80.9 1.0
O I:LYS51 2.8 89.8 1.0
O1A I:ANP603 3.0 83.3 1.0
O I:GLY32 3.0 85.4 1.0
C I:THR30 4.0 74.0 1.0
C I:LYS51 4.0 84.8 1.0
C I:GLY32 4.2 82.5 1.0
PA I:ANP603 4.2 92.9 1.0
N I:GLY32 4.4 77.9 1.0
O I:ASP52 4.4 99.2 1.0
O2A I:ANP603 4.7 99.8 1.0
C I:LEU31 4.7 76.8 1.0
CB I:LYS51 4.7 81.1 1.0
O5' I:ANP603 4.7 92.0 1.0
CB I:THR30 4.7 74.1 1.0
CA I:ASP52 4.7 89.8 1.0
C I:ASP52 4.8 92.3 1.0
CA I:THR30 4.8 71.4 1.0
CA I:LEU31 4.8 72.2 1.0
N I:ASP52 4.8 84.5 1.0
N I:LEU31 4.9 72.0 1.0
OG1 I:THR30 4.9 75.3 1.0
CA I:GLY32 4.9 80.4 1.0
N I:GLY35 4.9 80.8 1.0
CA I:LYS51 5.0 79.5 1.0
OD1 I:ASN153 5.0 140.3 1.0

Potassium binding site 3 out of 7 in 8wux

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Potassium binding site 3 out of 7 in the Cryo-Em Structure of H. Thermophilus Groel-Groes Bullet Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Cryo-Em Structure of H. Thermophilus Groel-Groes Bullet Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
J:K602

b:96.1
occ:1.00
 O J:THR30 2.7 82.1 1.0
O1A J:ANP603 2.9 86.5 1.0
O J:LYS51 2.9 91.7 1.0
O J:GLY32 2.9 88.6 1.0
C J:THR30 3.9 76.5 1.0
PA J:ANP603 4.1 95.5 1.0
C J:GLY32 4.1 84.0 1.0
C J:LYS51 4.1 85.7 1.0
N J:GLY32 4.3 80.5 1.0
O J:ASP52 4.6 99.5 1.0
O2A J:ANP603 4.6 101.2 1.0
O5' J:ANP603 4.6 94.1 1.0
C J:LEU31 4.6 79.5 1.0
CB J:THR30 4.8 76.0 1.0
CA J:LEU31 4.8 74.6 1.0
CA J:GLY32 4.8 82.6 1.0
CB J:LYS51 4.8 77.2 1.0
CA J:ASP52 4.8 88.9 1.0
CA J:THR30 4.8 73.9 1.0
N J:LEU31 4.8 75.1 1.0
C J:ASP52 4.9 91.4 1.0
OD1 J:ASN153 4.9 151.8 1.0
OG1 J:THR30 4.9 77.2 1.0
N J:ASP52 4.9 84.2 1.0

Potassium binding site 4 out of 7 in 8wux

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Potassium binding site 4 out of 7 in the Cryo-Em Structure of H. Thermophilus Groel-Groes Bullet Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Cryo-Em Structure of H. Thermophilus Groel-Groes Bullet Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
K:K602

b:101.0
occ:1.00
 O K:THR30 2.7 83.3 1.0
O K:LYS51 2.8 93.1 1.0
O1A K:ANP603 3.0 87.6 1.0
O K:GLY32 3.0 88.5 1.0
C K:THR30 3.9 76.5 1.0
C K:LYS51 4.0 88.1 1.0
C K:GLY32 4.1 83.3 1.0
PA K:ANP603 4.2 96.6 1.0
N K:GLY32 4.3 80.8 1.0
O K:ASP52 4.4 103.3 1.0
C K:LEU31 4.7 79.1 1.0
O2A K:ANP603 4.7 102.1 1.0
O5' K:ANP603 4.7 94.8 1.0
CB K:THR30 4.7 76.1 1.0
CB K:LYS51 4.8 81.3 1.0
CA K:ASP52 4.8 92.8 1.0
CA K:LEU31 4.8 74.7 1.0
C K:ASP52 4.8 95.2 1.0
CA K:THR30 4.8 73.0 1.0
N K:LEU31 4.8 75.0 1.0
CA K:GLY32 4.8 82.0 1.0
N K:ASP52 4.9 87.7 1.0
OG1 K:THR30 4.9 78.2 1.0

Potassium binding site 5 out of 7 in 8wux

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Potassium binding site 5 out of 7 in the Cryo-Em Structure of H. Thermophilus Groel-Groes Bullet Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Cryo-Em Structure of H. Thermophilus Groel-Groes Bullet Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
L:K602

b:97.8
occ:1.00
 O L:THR30 2.7 82.3 1.0
O L:LYS51 2.9 95.0 1.0
O L:GLY32 2.9 90.2 1.0
O1A L:ANP603 3.0 85.5 1.0
C L:THR30 3.9 76.1 1.0
C L:GLY32 4.1 85.2 1.0
C L:LYS51 4.1 88.8 1.0
PA L:ANP603 4.1 95.2 1.0
N L:GLY32 4.3 79.8 1.0
O L:ASP52 4.4 102.3 1.0
O2A L:ANP603 4.6 101.7 1.0
C L:LEU31 4.6 78.8 1.0
O5' L:ANP603 4.6 95.0 1.0
CB L:THR30 4.8 76.6 1.0
CA L:ASP52 4.8 93.0 1.0
CA L:LEU31 4.8 74.8 1.0
CB L:LYS51 4.8 82.0 1.0
C L:ASP52 4.8 95.1 1.0
CA L:GLY32 4.8 82.2 1.0
CA L:THR30 4.8 73.8 1.0
N L:LEU31 4.8 74.5 1.0
N L:ASP52 4.9 88.0 1.0
OG1 L:THR30 4.9 79.1 1.0

Potassium binding site 6 out of 7 in 8wux

Go back to Potassium Binding Sites List in 8wux
Potassium binding site 6 out of 7 in the Cryo-Em Structure of H. Thermophilus Groel-Groes Bullet Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Cryo-Em Structure of H. Thermophilus Groel-Groes Bullet Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
M:K602

b:89.7
occ:1.00
 O M:THR30 2.7 78.2 1.0
O M:LYS51 2.8 88.4 1.0
O1A M:ANP603 2.9 82.0 1.0
O M:GLY32 2.9 84.7 1.0
C M:THR30 3.9 71.4 1.0
C M:LYS51 4.0 82.5 1.0
C M:GLY32 4.1 80.0 1.0
PA M:ANP603 4.1 92.1 1.0
N M:GLY32 4.3 76.8 1.0
O M:ASP52 4.4 97.0 1.0
C M:LEU31 4.6 75.7 1.0
O5' M:ANP603 4.6 91.7 1.0
O2A M:ANP603 4.7 96.9 1.0
CB M:THR30 4.7 72.5 1.0
CA M:ASP52 4.8 85.2 1.0
CB M:LYS51 4.8 74.0 1.0
CA M:LEU31 4.8 69.1 1.0
C M:ASP52 4.8 89.2 1.0
CA M:GLY32 4.8 77.0 1.0
CA M:THR30 4.8 69.9 1.0
N M:LEU31 4.8 69.1 1.0
N M:ASP52 4.9 80.9 1.0
OG1 M:THR30 4.9 73.8 1.0

Potassium binding site 7 out of 7 in 8wux

Go back to Potassium Binding Sites List in 8wux
Potassium binding site 7 out of 7 in the Cryo-Em Structure of H. Thermophilus Groel-Groes Bullet Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Cryo-Em Structure of H. Thermophilus Groel-Groes Bullet Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
N:K602

b:98.2
occ:1.00
 O N:THR30 2.7 80.8 1.0
O N:LYS51 2.9 94.1 1.0
O1A N:ANP603 3.0 85.5 1.0
O N:GLY32 3.0 87.4 1.0
C N:THR30 3.9 74.7 1.0
C N:LYS51 4.1 88.0 1.0
C N:GLY32 4.2 83.9 1.0
PA N:ANP603 4.2 95.7 1.0
O N:ASP52 4.3 103.5 1.0
N N:GLY32 4.4 80.0 1.0
O2A N:ANP603 4.7 102.1 1.0
C N:LEU31 4.7 78.7 1.0
CB N:THR30 4.7 76.8 1.0
O5' N:ANP603 4.7 94.8 1.0
CA N:ASP52 4.8 93.0 1.0
C N:ASP52 4.8 95.8 1.0
CA N:THR30 4.8 73.2 1.0
CA N:LEU31 4.8 74.2 1.0
N N:LEU31 4.9 73.5 1.0
CB N:LYS51 4.9 81.5 1.0
N N:ASP52 4.9 86.9 1.0
OG1 N:THR30 4.9 78.6 1.0
CA N:GLY32 4.9 82.8 1.0
N N:GLY35 5.0 82.5 1.0

Reference:

Z.Liao, C.C.Gopalasingam, M.Kameya, C.Gerle, H.Shigematsu, M.Ishii, T.Arakawa, S.Fushinobu. Structural Insights Into Thermophilic Chaperonin Complexes. Structure 2024.
ISSN: ISSN 0969-2126
PubMed: 38492570
DOI: 10.1016/J.STR.2024.02.012
Page generated: Tue Aug 13 01:14:49 2024

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