Potassium in PDB 8wuw: Cryo-Em Structure of H. Thermophilus Groel-GROES2 Asymmetric Football Complex

Enzymatic activity of Cryo-Em Structure of H. Thermophilus Groel-GROES2 Asymmetric Football Complex

All present enzymatic activity of Cryo-Em Structure of H. Thermophilus Groel-GROES2 Asymmetric Football Complex:
5.6.1.7;

Other elements in 8wuw:

The structure of Cryo-Em Structure of H. Thermophilus Groel-GROES2 Asymmetric Football Complex also contains other interesting chemical elements:

Magnesium (Mg) 14 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Cryo-Em Structure of H. Thermophilus Groel-GROES2 Asymmetric Football Complex (pdb code 8wuw). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 7 binding sites of Potassium where determined in the Cryo-Em Structure of H. Thermophilus Groel-GROES2 Asymmetric Football Complex, PDB code: 8wuw:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7;

Potassium binding site 1 out of 7 in 8wuw

Go back to Potassium Binding Sites List in 8wuw
Potassium binding site 1 out of 7 in the Cryo-Em Structure of H. Thermophilus Groel-GROES2 Asymmetric Football Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Cryo-Em Structure of H. Thermophilus Groel-GROES2 Asymmetric Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
H:K602

b:104.1
occ:1.00
 O H:THR30 2.7 82.4 1.0
O H:GLY32 2.8 86.4 1.0
O H:LYS51 2.9 93.3 1.0
O1A H:ANP603 3.3 83.5 1.0
C H:THR30 4.0 69.0 1.0
C H:GLY32 4.1 78.9 1.0
C H:LYS51 4.1 86.5 1.0
PA H:ANP603 4.4 90.1 1.0
N H:GLY32 4.4 72.3 1.0
CB H:LYS51 4.5 75.8 1.0
O H:ASP52 4.6 111.4 1.0
O2A H:ANP603 4.6 94.3 1.0
C H:LEU31 4.7 70.4 1.0
CB H:THR30 4.7 68.2 1.0
CA H:THR30 4.8 59.6 1.0
N H:GLY35 4.8 74.1 1.0
CA H:GLY32 4.9 76.3 1.0
O5' H:ANP603 4.9 94.0 1.0
OD1 H:ASN153 4.9 147.2 1.0
N H:LEU31 4.9 68.8 1.0
CA H:LEU31 4.9 66.5 1.0
CA H:LYS51 4.9 80.2 1.0
CA H:ASP52 4.9 93.2 1.0
C H:ASP52 5.0 96.9 1.0
CA H:GLY35 5.0 72.5 1.0
CA H:PRO33 5.0 76.3 1.0

Potassium binding site 2 out of 7 in 8wuw

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Potassium binding site 2 out of 7 in the Cryo-Em Structure of H. Thermophilus Groel-GROES2 Asymmetric Football Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Cryo-Em Structure of H. Thermophilus Groel-GROES2 Asymmetric Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
I:K602

b:97.1
occ:1.00
 O I:THR30 2.7 84.3 1.0
O I:GLY32 2.9 83.0 1.0
O I:LYS51 2.9 94.7 1.0
O1A I:ANP603 3.3 84.1 1.0
C I:THR30 3.9 70.3 1.0
C I:GLY32 4.1 78.2 1.0
C I:LYS51 4.1 86.2 1.0
PA I:ANP603 4.4 90.8 1.0
N I:GLY32 4.4 69.8 1.0
CB I:LYS51 4.4 77.4 1.0
O2A I:ANP603 4.6 95.8 1.0
O I:ASP52 4.6 107.3 1.0
CB I:THR30 4.7 67.0 1.0
C I:LEU31 4.7 72.0 1.0
CA I:THR30 4.7 61.3 1.0
N I:GLY35 4.8 74.4 1.0
OD1 I:ASN153 4.8 134.6 1.0
N I:LEU31 4.9 67.9 1.0
O5' I:ANP603 4.9 93.6 1.0
CA I:GLY32 4.9 75.3 1.0
CA I:LEU31 4.9 67.3 1.0
CA I:LYS51 4.9 80.1 1.0
CA I:ASP52 5.0 93.8 1.0
CA I:GLY35 5.0 71.8 1.0
C I:ASP52 5.0 96.8 1.0
OG1 I:THR30 5.0 70.2 1.0

Potassium binding site 3 out of 7 in 8wuw

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Potassium binding site 3 out of 7 in the Cryo-Em Structure of H. Thermophilus Groel-GROES2 Asymmetric Football Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Cryo-Em Structure of H. Thermophilus Groel-GROES2 Asymmetric Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
J:K602

b:93.8
occ:1.00
 O J:THR30 2.7 79.4 1.0
O J:GLY32 2.8 82.9 1.0
O J:LYS51 3.0 92.8 1.0
O1A J:ANP603 3.3 81.8 1.0
C J:THR30 4.0 67.0 1.0
C J:GLY32 4.0 74.7 1.0
C J:LYS51 4.2 86.3 1.0
PA J:ANP603 4.3 88.1 1.0
N J:GLY32 4.4 69.3 1.0
CB J:LYS51 4.5 76.0 1.0
O2A J:ANP603 4.6 95.5 1.0
O J:ASP52 4.6 109.4 1.0
C J:LEU31 4.7 68.7 1.0
CB J:THR30 4.7 66.9 1.0
N J:GLY35 4.8 73.0 1.0
CA J:THR30 4.8 60.3 1.0
O5' J:ANP603 4.8 93.0 1.0
CA J:GLY32 4.8 71.6 1.0
OD1 J:ASN153 4.9 139.0 1.0
CA J:LEU31 4.9 63.2 1.0
N J:LEU31 4.9 65.7 1.0
CA J:PRO33 5.0 73.4 1.0
N J:PRO33 5.0 72.0 1.0
CA J:ASP52 5.0 93.5 1.0
C J:ASP52 5.0 96.5 1.0
CA J:LYS51 5.0 79.6 1.0

Potassium binding site 4 out of 7 in 8wuw

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Potassium binding site 4 out of 7 in the Cryo-Em Structure of H. Thermophilus Groel-GROES2 Asymmetric Football Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Cryo-Em Structure of H. Thermophilus Groel-GROES2 Asymmetric Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
K:K602

b:95.8
occ:1.00
 O K:THR30 2.7 82.8 1.0
O K:GLY32 2.8 84.8 1.0
O K:LYS51 2.9 96.0 1.0
O1A K:ANP603 3.3 84.2 1.0
C K:THR30 3.9 69.5 1.0
C K:GLY32 4.1 77.6 1.0
C K:LYS51 4.1 87.0 1.0
PA K:ANP603 4.4 89.2 1.0
N K:GLY32 4.4 71.2 1.0
CB K:LYS51 4.5 77.5 1.0
O2A K:ANP603 4.6 95.9 1.0
O K:ASP52 4.6 111.4 1.0
C K:LEU31 4.7 71.3 1.0
CB K:THR30 4.7 67.4 1.0
CA K:THR30 4.8 60.6 1.0
N K:GLY35 4.8 75.7 1.0
O5' K:ANP603 4.9 94.6 1.0
CA K:GLY32 4.9 74.4 1.0
N K:LEU31 4.9 66.8 1.0
OD1 K:ASN153 4.9 142.0 1.0
CA K:LEU31 4.9 65.2 1.0
CA K:ASP52 4.9 96.2 1.0
CA K:LYS51 5.0 80.1 1.0
C K:ASP52 5.0 100.0 1.0
N K:ASP52 5.0 88.6 1.0
CA K:PRO33 5.0 77.7 1.0
OG1 K:THR30 5.0 71.3 1.0

Potassium binding site 5 out of 7 in 8wuw

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Potassium binding site 5 out of 7 in the Cryo-Em Structure of H. Thermophilus Groel-GROES2 Asymmetric Football Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Cryo-Em Structure of H. Thermophilus Groel-GROES2 Asymmetric Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
L:K602

b:105.4
occ:1.00
 O L:THR30 2.7 82.7 1.0
O L:GLY32 2.8 85.5 1.0
O L:LYS51 3.0 95.3 1.0
O1A L:ANP603 3.3 86.0 1.0
C L:THR30 4.0 69.9 1.0
C L:GLY32 4.0 78.7 1.0
C L:LYS51 4.1 88.2 1.0
PA L:ANP603 4.3 92.3 1.0
N L:GLY32 4.4 70.7 1.0
CB L:LYS51 4.5 79.0 1.0
O2A L:ANP603 4.5 98.8 1.0
C L:LEU31 4.7 71.0 1.0
O L:ASP52 4.7 113.7 1.0
CB L:THR30 4.7 68.2 1.0
CA L:THR30 4.8 61.3 1.0
N L:GLY35 4.8 76.8 1.0
O5' L:ANP603 4.8 95.4 1.0
CA L:GLY32 4.8 75.2 1.0
OD1 L:ASN153 4.8 147.2 1.0
CA L:LEU31 4.9 67.6 1.0
N L:LEU31 4.9 68.9 1.0
CA L:ASP52 4.9 97.0 1.0
CA L:PRO33 5.0 78.0 1.0
N L:PRO33 5.0 77.7 1.0
C L:ASP52 5.0 100.7 1.0
CA L:LYS51 5.0 83.3 1.0

Potassium binding site 6 out of 7 in 8wuw

Go back to Potassium Binding Sites List in 8wuw
Potassium binding site 6 out of 7 in the Cryo-Em Structure of H. Thermophilus Groel-GROES2 Asymmetric Football Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Cryo-Em Structure of H. Thermophilus Groel-GROES2 Asymmetric Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
M:K602

b:96.5
occ:1.00
 O M:THR30 2.7 80.7 1.0
O M:GLY32 2.8 79.6 1.0
O M:LYS51 3.0 92.3 1.0
O1A M:ANP603 3.3 82.1 1.0
C M:THR30 3.9 67.6 1.0
C M:GLY32 4.1 73.4 1.0
C M:LYS51 4.1 85.1 1.0
PA M:ANP603 4.4 88.3 1.0
N M:GLY32 4.4 69.8 1.0
CB M:LYS51 4.5 73.7 1.0
O2A M:ANP603 4.6 95.3 1.0
O M:ASP52 4.6 110.5 1.0
C M:LEU31 4.7 69.2 1.0
CB M:THR30 4.7 66.0 1.0
CA M:THR30 4.8 59.3 1.0
N M:GLY35 4.8 72.5 1.0
O5' M:ANP603 4.8 94.5 1.0
CA M:GLY32 4.9 72.3 1.0
N M:LEU31 4.9 65.4 1.0
CA M:LEU31 4.9 64.2 1.0
OD1 M:ASN153 4.9 140.7 1.0
CA M:ASP52 4.9 91.2 1.0
CA M:LYS51 5.0 78.7 1.0
C M:ASP52 5.0 96.0 1.0
CA M:PRO33 5.0 74.0 1.0
OG1 M:THR30 5.0 68.6 1.0

Potassium binding site 7 out of 7 in 8wuw

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Potassium binding site 7 out of 7 in the Cryo-Em Structure of H. Thermophilus Groel-GROES2 Asymmetric Football Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Cryo-Em Structure of H. Thermophilus Groel-GROES2 Asymmetric Football Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
N:K602

b:102.3
occ:1.00
 O N:THR30 2.7 83.3 1.0
O N:GLY32 2.8 82.6 1.0
O N:LYS51 3.0 98.2 1.0
O1A N:ANP603 3.3 85.8 1.0
C N:THR30 4.0 69.2 1.0
C N:GLY32 4.0 75.6 1.0
C N:LYS51 4.2 90.9 1.0
PA N:ANP603 4.3 90.6 1.0
N N:GLY32 4.4 70.9 1.0
CB N:LYS51 4.5 78.2 1.0
O2A N:ANP603 4.6 96.7 1.0
O N:ASP52 4.7 114.5 1.0
C N:LEU31 4.7 70.7 1.0
CB N:THR30 4.7 67.1 1.0
N N:GLY35 4.7 75.6 1.0
CA N:THR30 4.8 60.3 1.0
OD1 N:ASN153 4.8 147.8 1.0
O5' N:ANP603 4.8 95.1 1.0
CA N:GLY32 4.8 73.7 1.0
N N:LEU31 4.9 68.4 1.0
CA N:LEU31 4.9 66.7 1.0
CA N:PRO33 4.9 77.4 1.0
N N:PRO33 4.9 74.8 1.0
CA N:GLY35 5.0 72.1 1.0
CA N:LYS51 5.0 83.8 1.0

Reference:

Z.Liao, C.C.Gopalasingam, M.Kameya, C.Gerle, H.Shigematsu, M.Ishii, T.Arakawa, S.Fushinobu. Structural Insights Into Thermophilic Chaperonin Complexes. Structure 2024.
ISSN: ISSN 0969-2126
PubMed: 38492570
DOI: 10.1016/J.STR.2024.02.012
Page generated: Tue Aug 13 01:14:39 2024

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