Potassium in PDB 8w9e: Cryo-Em Structure of the RPD3S-Nucleosome Complex From Budding Yeast in State 2

The structure of Cryo-Em Structure of the RPD3S-Nucleosome Complex From Budding Yeast in State 2 also contains other interesting chemical elements:

Zinc

(Zn)

7 atoms

The binding sites of Potassium atom in the Cryo-Em Structure of the RPD3S-Nucleosome Complex From Budding Yeast in State 2 (pdb code 8w9e). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Cryo-Em Structure of the RPD3S-Nucleosome Complex From Budding Yeast in State 2, PDB code: 8w9e:

Potassium binding site 1 out of 1 in the Cryo-Em Structure of the RPD3S-Nucleosome Complex From Budding Yeast in State 2


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Cryo-Em Structure of the RPD3S-Nucleosome Complex From Budding Yeast in State 2 within 5.0Å range: probe atom residue distance (Å) B Occ B:K502 b:30.0 occ:1.00 O B:PHE197 2.4 36.6 1.0 O B:THR200 2.6 43.8 1.0 O B:TYR232 3.4 49.6 1.0 O B:TYR198 3.6 46.4 1.0 C B:PHE197 3.6 36.6 1.0 O B:VAL203 3.6 36.4 1.0 C B:THR200 3.8 43.8 1.0 C B:TYR198 3.8 46.4 1.0 CA B:TYR198 3.9 46.4 1.0 N B:THR200 4.0 43.8 1.0 CG2 B:THR200 4.1 43.8 1.0 CB B:TYR232 4.1 49.6 1.0 N B:TYR198 4.2 46.4 1.0 C B:TYR232 4.4 49.6 1.0 CA B:THR200 4.4 43.8 1.0 O B:GLY229 4.4 53.4 1.0 N B:THR199 4.5 46.1 1.0 CA B:GLY229 4.5 53.4 1.0 CB B:PHE197 4.7 36.6 1.0 CA B:PHE197 4.8 36.6 1.0 N B:ASP201 4.8 43.0 1.0 C B:VAL203 4.8 36.4 1.0 CA B:TYR232 4.9 49.6 1.0 CB B:THR200 4.9 43.8 1.0 C B:GLY229 5.0 53.4 1.0

C.Wang, C.Chu, Z.Guo, X.Zhan. Structures and Dynamics of RPD3S Complex Bound to Nucleosome. Sci Adv V. 10 K7678 2024.
ISSN: ESSN 2375-2548
PubMed: 38598631
DOI: 10.1126/SCIADV.ADK7678