Potassium in PDB 8utg: An Rna G-Quadruplex From the NS5 Gene in the West Nile Virus Genome

The structure of An Rna G-Quadruplex From the NS5 Gene in the West Nile Virus Genome, PDB code: 8utg was solved by J.R.Terrell, T.T.Le, W.D.Wilson, J.L.Siemer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.28 / 1.97
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	33.805, 33.805, 163.376, 90, 90, 120
R / Rfree (%)	19.4 / 24.3

The binding sites of Potassium atom in the An Rna G-Quadruplex From the NS5 Gene in the West Nile Virus Genome (pdb code 8utg). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the An Rna G-Quadruplex From the NS5 Gene in the West Nile Virus Genome, PDB code: 8utg:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in the An Rna G-Quadruplex From the NS5 Gene in the West Nile Virus Genome


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of An Rna G-Quadruplex From the NS5 Gene in the West Nile Virus Genome within 5.0Å range: probe atom residue distance (Å) B Occ A:K102 b:28.1 occ:1.00 HN3 A:NH4101 2.7 30.4 1.0 O6 A:G5 2.8 23.7 1.0 O6 A:G14 2.8 26.0 1.0 O6 A:G18 2.8 28.5 1.0 O6 A:G11 2.8 24.3 1.0 O6 A:G13 2.8 23.4 1.0 O6 A:G10 2.9 24.4 1.0 O6 A:G4 2.9 26.6 1.0 O6 A:G17 2.9 24.1 1.0 HN1 A:NH4103 2.9 25.0 1.0 HN2 A:NH4103 3.3 25.0 1.0 HN4 A:NH4103 3.3 25.0 1.0 N A:NH4103 3.3 20.8 1.0 H1 A:G4 3.5 36.1 1.0 N A:NH4101 3.5 25.3 1.0 H1 A:G10 3.6 30.1 1.0 H1 A:G17 3.6 31.0 1.0 H1 A:G5 3.6 34.9 1.0 C6 A:G14 3.6 31.6 1.0 H1 A:G18 3.6 33.5 1.0 C6 A:G4 3.6 27.1 1.0 C6 A:G10 3.7 23.9 1.0 H1 A:G14 3.7 31.9 1.0 C6 A:G5 3.7 31.1 1.0 H1 A:G11 3.7 33.0 1.0 HN1 A:NH4101 3.7 30.4 1.0 H1 A:G13 3.7 29.0 1.0 C6 A:G18 3.7 26.1 1.0 C6 A:G17 3.7 27.1 1.0 C6 A:G11 3.7 33.9 1.0 C6 A:G13 3.8 23.3 1.0 HN4 A:NH4101 3.8 30.4 1.0 N1 A:G4 3.9 30.1 1.0 N1 A:G10 4.0 25.1 1.0 N1 A:G5 4.0 29.1 1.0 N1 A:G17 4.0 25.8 1.0 N1 A:G14 4.0 26.5 1.0 N1 A:G18 4.0 27.9 1.0 N1 A:G11 4.1 27.4 1.0 N1 A:G13 4.1 24.2 1.0 HN2 A:NH4101 4.3 30.4 1.0 HN3 A:NH4103 4.3 25.0 1.0 C5 A:G14 4.7 27.0 1.0 C5 A:G4 4.8 25.4 1.0 C5 A:G10 4.8 26.6 1.0 C5 A:G5 4.9 31.1 1.0 C5 A:G18 4.9 30.2 1.0 C5 A:G11 4.9 28.5 1.0 C5 A:G17 4.9 26.7 1.0 C5 A:G13 5.0 25.0 1.0

Potassium binding site 2 out of 2 in the An Rna G-Quadruplex From the NS5 Gene in the West Nile Virus Genome


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of An Rna G-Quadruplex From the NS5 Gene in the West Nile Virus Genome within 5.0Å range: probe atom residue distance (Å) B Occ B:K101 b:25.6 occ:1.00 HN3 A:NH4103 2.4 25.0 1.0 O6 B:G10 2.6 26.5 1.0 O6 B:G14 2.7 24.2 1.0 O6 B:G4 2.8 22.1 1.0 O6 B:G5 2.8 23.4 1.0 O6 B:G18 2.8 21.6 1.0 O6 B:G17 2.8 23.4 1.0 O6 B:G11 2.8 26.1 1.0 O6 B:G13 2.8 23.5 1.0 HN1 B:NH4102 3.2 30.1 1.0 HN2 B:NH4102 3.3 30.1 1.0 HN4 B:NH4102 3.3 30.1 1.0 N A:NH4103 3.4 20.8 1.0 N B:NH4102 3.5 25.1 1.0 H1 B:G14 3.5 27.8 1.0 H1 B:G17 3.5 27.5 1.0 H1 B:G5 3.5 27.9 1.0 H1 B:G10 3.5 31.4 1.0 H1 B:G4 3.6 31.7 1.0 C6 B:G10 3.6 25.4 1.0 C6 B:G4 3.6 24.4 1.0 H1 B:G13 3.6 40.2 1.0 C6 B:G14 3.6 26.2 1.0 HN4 A:NH4103 3.6 25.0 1.0 C6 B:G13 3.6 27.6 1.0 HN2 A:NH4103 3.7 25.0 1.0 C6 B:G5 3.7 25.0 1.0 H1 B:G18 3.7 26.0 1.0 C6 B:G17 3.7 25.0 1.0 H1 B:G11 3.7 31.2 1.0 C6 B:G18 3.7 25.7 1.0 C6 B:G11 3.8 27.4 1.0 N1 B:G4 3.9 26.4 1.0 N1 B:G10 3.9 26.1 1.0 N1 B:G14 3.9 23.1 1.0 N1 B:G5 4.0 23.2 1.0 N1 B:G17 4.0 22.9 1.0 N1 B:G13 4.0 33.5 1.0 HN1 A:NH4103 4.0 25.0 1.0 N1 B:G18 4.1 21.7 1.0 N1 B:G11 4.1 26.0 1.0 HN3 B:NH4102 4.4 30.1 1.0 C5 B:G4 4.8 28.4 1.0 C5 B:G10 4.8 31.2 1.0 C5 B:G13 4.9 28.4 1.0 C5 B:G14 4.9 29.2 1.0 C5 B:G18 4.9 21.0 1.0 C5 B:G5 4.9 26.9 1.0 C5 B:G17 4.9 27.5 1.0 C5 B:G11 5.0 28.5 1.0

J.R.Terrell, T.T.Le, A.Paul, G.M.K.Poon, M.A.Brinton, M.W.Germann, W.D.Wilson, J.L.Siemer. Structure of An Rna G-Quadruplex From the West Nile Virus Genome To Be Published.