Potassium in PDB 8u5k: Structure of Mango II Aptamer Bound to T01-6A

The structure of Structure of Mango II Aptamer Bound to T01-6A, PDB code: 8u5k was solved by L.F.M.Passalacqua, A.R.Ferre-D'amare, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	69.73 / 2.80
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	37.191, 181.726, 108.76, 90, 90, 90
R / Rfree (%)	22.2 / 23.5

The binding sites of Potassium atom in the Structure of Mango II Aptamer Bound to T01-6A (pdb code 8u5k). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 8 binding sites of Potassium where determined in the Structure of Mango II Aptamer Bound to T01-6A, PDB code: 8u5k:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Potassium binding site 1 out of 8 in the Structure of Mango II Aptamer Bound to T01-6A


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Structure of Mango II Aptamer Bound to T01-6A within 5.0Å range: probe atom residue distance (Å) B Occ A:K101 b:42.6 occ:1.00 O6 A:G13 2.6 47.4 1.0 O6 A:G16 2.7 42.3 1.0 O6 A:G18 2.7 46.1 1.0 O6 A:G29 2.7 46.1 1.0 O6 A:G21 2.8 46.2 1.0 O6 A:G24 2.8 48.6 1.0 O6 A:G11 2.9 42.5 1.0 O6 A:G27 3.0 45.4 1.0 C6 A:G13 3.5 46.8 1.0 C6 A:G18 3.6 46.7 1.0 C6 A:G16 3.6 43.0 1.0 C6 A:G29 3.6 45.6 1.0 K A:K102 3.6 42.0 1.0 C6 A:G11 3.7 42.6 1.0 C6 A:G24 3.7 49.4 1.0 C6 A:G21 3.8 46.9 1.0 N1 A:G13 3.8 45.8 1.0 C6 A:G27 3.8 44.4 1.0 N1 A:G18 3.9 46.7 1.0 N1 A:G11 3.9 43.2 1.0 N1 A:G16 4.0 43.5 1.0 N1 A:G29 4.0 45.7 1.0 N1 A:G27 4.0 43.4 1.0 N1 A:G24 4.0 50.4 1.0 N1 A:G21 4.2 46.3 1.0 C5 A:G13 4.8 46.8 1.0 C5 A:G29 4.8 45.0 1.0 C5 A:G16 4.8 43.5 1.0 C5 A:G18 4.8 47.7 1.0 C5 A:G11 4.9 42.2 1.0 C5 A:G21 4.9 48.4 1.0 C5 A:G24 5.0 49.2 1.0

Potassium binding site 2 out of 8 in the Structure of Mango II Aptamer Bound to T01-6A


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Structure of Mango II Aptamer Bound to T01-6A within 5.0Å range: probe atom residue distance (Å) B Occ A:K102 b:42.0 occ:1.00 O6 A:G26 2.6 45.0 1.0 O6 A:G15 2.7 40.3 1.0 O6 A:G20 2.7 44.1 1.0 O6 A:G16 2.7 42.3 1.0 O6 A:G21 2.8 46.2 1.0 O6 A:G27 2.9 45.4 1.0 O6 A:G10 2.9 42.4 1.0 O6 A:G11 3.0 42.5 1.0 K A:K103 3.2 47.5 0.5 C6 A:G20 3.5 45.3 1.0 C6 A:G16 3.6 43.0 1.0 C6 A:G15 3.6 40.9 1.0 K A:K101 3.6 42.6 1.0 C6 A:G26 3.6 44.6 1.0 C6 A:G21 3.7 46.9 1.0 C6 A:G10 3.7 42.1 1.0 C6 A:G27 3.8 44.4 1.0 N1 A:G15 3.9 41.5 1.0 N1 A:G16 3.9 43.5 1.0 C6 A:G11 3.9 42.6 1.0 N1 A:G20 3.9 45.5 1.0 N1 A:G10 4.0 42.5 1.0 N1 A:G21 4.0 46.3 1.0 N1 A:G26 4.1 43.4 1.0 N1 A:G11 4.1 43.2 1.0 N1 A:G27 4.1 43.4 1.0 C5 A:G20 4.6 46.5 1.0 C5 A:G16 4.7 43.5 1.0 C5 A:G15 4.8 41.1 1.0 C5 A:G21 4.8 48.4 1.0 C5 A:G26 4.9 45.4 1.0 C5 A:G10 4.9 41.6 1.0 C5 A:G27 5.0 44.4 1.0

Potassium binding site 3 out of 8 in the Structure of Mango II Aptamer Bound to T01-6A


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Structure of Mango II Aptamer Bound to T01-6A within 5.0Å range: probe atom residue distance (Å) B Occ A:K103 b:47.5 occ:0.50 O6 A:G10 2.6 42.4 1.0 O6 A:G20 2.7 44.1 1.0 O6 A:G15 2.8 40.3 1.0 O6 A:G26 2.9 45.0 1.0 K A:K102 3.2 42.0 1.0 C6 A:G10 3.6 42.1 1.0 C6 A:G15 3.6 40.9 1.0 C6 A:G20 3.7 45.3 1.0 C6 A:G26 3.7 44.6 1.0 N1 A:G15 3.9 41.5 1.0 N1 A:G10 4.0 42.5 1.0 N1 A:G26 4.0 43.4 1.0 N1 A:G20 4.1 45.5 1.0 C5 A:G15 4.8 41.1 1.0 C5 A:G10 4.9 41.6 1.0 C5 A:G26 4.9 45.4 1.0 C5 A:G20 4.9 46.5 1.0

Potassium binding site 4 out of 8 in the Structure of Mango II Aptamer Bound to T01-6A


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Structure of Mango II Aptamer Bound to T01-6A within 5.0Å range: probe atom residue distance (Å) B Occ B:K101 b:61.0 occ:1.00 O6 B:G11 2.7 64.5 1.0 O6 B:G27 2.7 65.5 1.0 O6 B:G15 2.8 59.9 1.0 O6 B:G16 2.8 61.4 1.0 O6 B:G10 2.8 64.0 1.0 O6 B:G26 2.9 65.7 1.0 O6 B:G20 3.0 65.4 1.0 O6 B:G21 3.0 62.8 1.0 K C:K103 3.3 67.8 1.0 K B:K102 3.4 61.9 1.0 C6 B:G10 3.5 63.8 1.0 C6 B:G27 3.6 63.1 1.0 N1 B:G10 3.6 65.6 1.0 C6 B:G16 3.7 62.1 1.0 C6 B:G20 3.7 65.5 1.0 C6 B:G11 3.7 64.8 1.0 C6 B:G15 3.8 62.1 1.0 C6 B:G26 3.8 62.9 1.0 C6 B:G21 3.8 62.2 1.0 N1 B:G27 3.9 62.0 1.0 N1 B:G20 3.9 64.8 1.0 N1 B:G21 3.9 60.0 1.0 N1 B:G16 4.0 62.2 1.0 N1 B:G26 4.0 61.1 1.0 N1 B:G11 4.1 67.4 1.0 N1 B:G15 4.2 63.7 1.0 C5 B:G10 4.6 61.2 1.0 C5 B:G27 4.8 60.9 1.0 C2 B:G10 4.8 65.9 1.0 C5 B:G20 4.8 66.3 1.0 C5 B:G16 4.9 63.3 1.0 C5 B:G11 4.9 63.4 1.0 C5 B:G15 5.0 63.6 1.0

Potassium binding site 5 out of 8 in the Structure of Mango II Aptamer Bound to T01-6A


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Structure of Mango II Aptamer Bound to T01-6A within 5.0Å range: probe atom residue distance (Å) B Occ B:K102 b:61.9 occ:1.00 O6 B:G24 2.7 65.0 1.0 O6 B:G27 2.8 65.5 1.0 O6 B:G18 2.8 58.8 1.0 O6 B:G16 2.8 61.4 1.0 O6 B:G21 2.8 62.8 1.0 O6 B:G13 2.9 69.8 1.0 O6 B:G11 3.0 64.5 1.0 O6 B:G29 3.1 69.4 1.0 K B:K101 3.4 61.0 1.0 C6 B:G24 3.6 65.5 1.0 C6 B:G21 3.6 62.2 1.0 C6 B:G27 3.6 63.1 1.0 C6 B:G16 3.7 62.1 1.0 N1 B:G21 3.7 60.0 1.0 C6 B:G18 3.7 61.8 1.0 C6 B:G13 3.8 68.8 1.0 N1 B:G27 3.8 62.0 1.0 C6 B:G11 3.8 64.8 1.0 C6 B:G29 3.8 66.5 1.0 N1 B:G16 3.9 62.2 1.0 N1 B:G24 3.9 67.1 1.0 N1 B:G29 4.0 66.4 1.0 N1 B:G13 4.0 64.8 1.0 N1 B:G11 4.2 67.4 1.0 N1 B:G18 4.2 63.7 1.0 C5 B:G24 4.7 66.5 1.0 C5 B:G21 4.8 64.1 1.0 C5 B:G27 4.8 60.9 1.0 C5 B:G16 4.9 63.3 1.0 C5 B:G18 4.9 63.3 1.0 C2 B:G21 5.0 60.2 1.0 C5 B:G11 5.0 63.4 1.0 C5 B:G29 5.0 64.8 1.0

Potassium binding site 6 out of 8 in the Structure of Mango II Aptamer Bound to T01-6A


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Structure of Mango II Aptamer Bound to T01-6A within 5.0Å range: probe atom residue distance (Å) B Occ C:K101 b:64.0 occ:1.00 O6 C:G27 2.7 67.0 1.0 O6 C:G10 2.8 64.1 1.0 O6 C:G26 2.8 63.1 1.0 O6 C:G11 2.9 67.3 1.0 O6 C:G15 2.9 64.6 1.0 O6 C:G20 2.9 66.5 1.0 O6 C:G16 3.0 68.4 1.0 O6 C:G21 3.0 68.0 1.0 K C:K103 3.2 67.8 1.0 C6 C:G10 3.4 64.5 1.0 K C:K102 3.4 71.1 1.0 C6 C:G27 3.5 68.7 1.0 N1 C:G10 3.6 62.9 1.0 C6 C:G20 3.6 66.5 1.0 N1 C:G27 3.7 68.8 1.0 C6 C:G11 3.7 66.6 1.0 C6 C:G26 3.7 65.0 1.0 C6 C:G15 3.8 63.0 1.0 N1 C:G20 3.8 68.5 1.0 C6 C:G16 3.8 66.8 1.0 C6 C:G21 3.9 70.5 1.0 N1 C:G26 4.0 66.9 1.0 N1 C:G11 4.0 64.5 1.0 N1 C:G16 4.0 67.3 1.0 N1 C:G21 4.1 73.1 1.0 N1 C:G15 4.1 60.9 1.0 C5 C:G10 4.6 66.7 1.0 C5 C:G20 4.8 63.9 1.0 C5 C:G27 4.8 70.7 1.0 C2 C:G10 4.8 63.3 1.0 C2 C:G27 5.0 70.7 1.0 C2 C:G20 5.0 70.0 1.0 C5 C:G11 5.0 67.8 1.0 C5 C:G15 5.0 62.1 1.0

Potassium binding site 7 out of 8 in the Structure of Mango II Aptamer Bound to T01-6A


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Structure of Mango II Aptamer Bound to T01-6A within 5.0Å range: probe atom residue distance (Å) B Occ C:K102 b:71.1 occ:1.00 O6 C:G24 2.7 78.5 1.0 O6 C:G21 2.7 68.0 1.0 O6 C:G27 2.8 67.0 1.0 O6 C:G18 2.9 77.6 1.0 O6 C:G13 2.9 73.2 1.0 O6 C:G16 2.9 68.4 1.0 O6 C:G29 2.9 75.8 1.0 O6 C:G11 3.0 67.3 1.0 K C:K101 3.4 64.0 1.0 C6 C:G21 3.5 70.5 1.0 C6 C:G24 3.6 77.8 1.0 C6 C:G27 3.6 68.7 1.0 C6 C:G29 3.7 77.5 1.0 C6 C:G16 3.7 66.8 1.0 C6 C:G18 3.7 74.5 1.0 N1 C:G16 3.8 67.3 1.0 C6 C:G13 3.8 73.7 1.0 N1 C:G21 3.8 73.1 1.0 C6 C:G11 3.8 66.6 1.0 N1 C:G27 3.9 68.8 1.0 N1 C:G29 3.9 78.0 1.0 N1 C:G24 4.0 74.7 1.0 N1 C:G11 4.1 64.5 1.0 N1 C:G18 4.2 71.6 1.0 N1 C:G13 4.2 75.8 1.0 C5 C:G24 4.7 81.0 1.0 C5 C:G21 4.7 70.3 1.0 C5 C:G29 4.8 78.9 1.0 C5 C:G27 4.8 70.7 1.0 C5 C:G18 4.8 71.3 1.0 C5 C:G16 4.9 63.6 1.0 C2 C:G16 5.0 65.1 1.0

Potassium binding site 8 out of 8 in the Structure of Mango II Aptamer Bound to T01-6A


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Structure of Mango II Aptamer Bound to T01-6A within 5.0Å range: probe atom residue distance (Å) B Occ C:K103 b:67.8 occ:1.00 O6 B:G10 2.6 64.0 1.0 O6 C:G20 2.6 66.5 1.0 O6 B:G20 2.8 65.4 1.0 O6 C:G10 2.8 64.1 1.0 O6 C:G26 2.8 63.1 1.0 O6 B:G15 2.9 59.9 1.0 O6 B:G26 3.0 65.7 1.0 O6 C:G15 3.0 64.6 1.0 K C:K101 3.2 64.0 1.0 K B:K101 3.3 61.0 1.0 C6 C:G20 3.4 66.5 1.0 N1 C:G20 3.4 68.5 1.0 C6 B:G10 3.5 63.8 1.0 C6 C:G26 3.7 65.0 1.0 C6 B:G20 3.7 65.5 1.0 N1 B:G10 3.7 65.6 1.0 C6 C:G10 3.8 64.5 1.0 C6 B:G15 3.8 62.1 1.0 C6 B:G26 3.8 62.9 1.0 C6 C:G15 3.9 63.0 1.0 N1 C:G26 4.0 66.9 1.0 N1 B:G20 4.0 64.8 1.0 N1 C:G10 4.1 62.9 1.0 N1 B:G26 4.1 61.1 1.0 N1 C:G15 4.2 60.9 1.0 N1 B:G15 4.2 63.7 1.0 C2 C:G20 4.7 70.0 1.0 C5 C:G20 4.7 63.9 1.0 C5 B:G10 4.8 61.2 1.0 C5 C:G26 4.8 66.2 1.0 C5 B:G15 4.9 63.6 1.0

L.F.M.Passalacqua, A.R.Ferre-D'amare. Structure of Mango II Aptamer Bound to T01-6A To Be Published.