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Potassium in PDB 8u5j: Structure of Mango III Variant Aptamer Bound to T01-07M-B

Protein crystallography data

The structure of Structure of Mango III Variant Aptamer Bound to T01-07M-B, PDB code: 8u5j was solved by L.F.M.Passalacqua, A.R.Ferre-D'amare, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.87 / 1.70
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 55.66, 55.66, 65.715, 90, 90, 120
R / Rfree (%) 20.1 / 23.6

Potassium Binding Sites:

The binding sites of Potassium atom in the Structure of Mango III Variant Aptamer Bound to T01-07M-B (pdb code 8u5j). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Structure of Mango III Variant Aptamer Bound to T01-07M-B, PDB code: 8u5j:

Potassium binding site 1 out of 1 in 8u5j

Go back to Potassium Binding Sites List in 8u5j
Potassium binding site 1 out of 1 in the Structure of Mango III Variant Aptamer Bound to T01-07M-B


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Structure of Mango III Variant Aptamer Bound to T01-07M-B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K101

b:16.4
occ:1.00
O6 A:G18 2.7 20.7 1.0
O6 A:G8 2.7 15.9 1.0
O6 A:G22 2.7 15.4 1.0
O6 A:G12 2.7 16.4 1.0
O6 A:G13 2.7 17.8 1.0
O6 A:G17 2.8 17.5 1.0
O6 A:G24 2.8 16.4 1.0
O6 A:G9 2.9 18.1 1.0
C6 A:G8 3.5 18.8 1.0
C6 A:G18 3.6 20.9 1.0
C6 A:G13 3.6 18.5 1.0
C6 A:G12 3.6 16.2 1.0
C6 A:G22 3.6 15.5 1.0
C6 A:G17 3.7 21.6 1.0
C6 A:G9 3.7 20.6 1.0
C6 A:G24 3.8 16.9 1.0
N1 A:G18 3.8 15.3 1.0
N1 A:G8 3.8 16.2 1.0
N1 A:G12 3.9 17.2 1.0
N1 A:G13 3.9 19.9 1.0
N1 A:G17 3.9 15.6 1.0
N1 A:G24 4.0 14.3 1.0
N1 A:G9 4.0 17.2 1.0
N1 A:G22 4.0 13.8 1.0
S09 A:W6F104 4.3 19.1 1.0
O A:HOH226 4.4 20.6 1.0
C08 A:W6F104 4.7 18.4 1.0
C5 A:G8 4.7 17.4 1.0
C5 A:G13 4.8 17.8 1.0
C5 A:G22 4.9 15.2 1.0
C10 A:W6F104 4.9 20.9 1.0
C5 A:G18 4.9 18.0 1.0
C5 A:G12 4.9 15.4 1.0
C5 A:G17 4.9 16.6 1.0
C2 A:A29 5.0 20.1 0.5
C2 A:A29 5.0 20.1 0.5
C5 A:G9 5.0 14.3 1.0

Reference:

L.F.M.Passalacqua, A.R.Ferre-D'amare. Structure of Mango III Variant Aptamer Bound to T01-07M-B To Be Published.
Page generated: Sat Aug 9 17:57:01 2025

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