Atomistry » Potassium » PDB 8pc0-8wa5 » 8sda
Atomistry »
  Potassium »
    PDB 8pc0-8wa5 »
      8sda »

Potassium in PDB 8sda: Cryoem Structure of Rat KV2.1(1-598) L403A Mutant in Nanodiscs

Potassium Binding Sites:

The binding sites of Potassium atom in the Cryoem Structure of Rat KV2.1(1-598) L403A Mutant in Nanodiscs (pdb code 8sda). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the Cryoem Structure of Rat KV2.1(1-598) L403A Mutant in Nanodiscs, PDB code: 8sda:
Jump to Potassium binding site number: 1; 2; 3; 4;

Potassium binding site 1 out of 4 in 8sda

Go back to Potassium Binding Sites List in 8sda
Potassium binding site 1 out of 4 in the Cryoem Structure of Rat KV2.1(1-598) L403A Mutant in Nanodiscs


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Cryoem Structure of Rat KV2.1(1-598) L403A Mutant in Nanodiscs within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K607

b:35.7
occ:1.00
 O B:THR373 2.5 39.2 1.0
O D:THR373 2.7 38.2 1.0
O A:VAL374 2.7 66.4 1.0
O C:VAL374 2.9 66.4 1.0
O C:THR373 2.9 40.5 1.0
O D:VAL374 2.9 45.0 1.0
O A:THR373 3.0 37.2 1.0
O B:VAL374 3.0 39.7 1.0
K A:K608 3.3 72.8 1.0
C A:VAL374 3.5 66.4 1.0
C D:VAL374 3.6 45.0 1.0
K B:K604 3.6 35.7 1.0
C C:VAL374 3.6 66.4 1.0
C B:VAL374 3.6 39.7 1.0
C B:THR373 3.7 39.2 1.0
C D:THR373 3.8 38.2 1.0
CA A:VAL374 3.9 66.4 1.0
C C:THR373 3.9 40.5 1.0
CA C:VAL374 3.9 66.4 1.0
CA D:VAL374 3.9 45.0 1.0
CA B:VAL374 4.0 39.7 1.0
C A:THR373 4.0 37.2 1.0
N B:VAL374 4.3 39.7 1.0
N C:VAL374 4.4 66.4 1.0
N D:VAL374 4.4 45.0 1.0
N A:VAL374 4.4 66.4 1.0
N A:GLY375 4.5 49.8 1.0
N D:GLY375 4.5 41.6 1.0
N B:GLY375 4.5 44.6 1.0
N C:GLY375 4.6 48.2 1.0
CA A:GLY375 4.9 49.8 1.0
CA B:THR373 4.9 39.2 1.0
CA D:GLY375 4.9 41.6 1.0
CA B:GLY375 5.0 44.6 1.0

Potassium binding site 2 out of 4 in 8sda

Go back to Potassium Binding Sites List in 8sda
Potassium binding site 2 out of 4 in the Cryoem Structure of Rat KV2.1(1-598) L403A Mutant in Nanodiscs


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Cryoem Structure of Rat KV2.1(1-598) L403A Mutant in Nanodiscs within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K608

b:72.8
occ:1.00
 O D:GLY375 2.6 41.6 1.0
O A:VAL374 2.7 66.4 1.0
O C:GLY375 2.7 48.2 1.0
O C:VAL374 2.7 66.4 1.0
O D:VAL374 2.7 45.0 1.0
O A:GLY375 2.7 49.8 1.0
O B:VAL374 2.8 39.7 1.0
O B:GLY375 2.8 44.6 1.0
K A:K607 3.3 35.7 1.0
C D:GLY375 3.4 41.6 1.0
C A:GLY375 3.4 49.8 1.0
K A:K609 3.5 124.6 1.0
C B:GLY375 3.6 44.6 1.0
C C:GLY375 3.6 48.2 1.0
C D:VAL374 3.8 45.0 1.0
C A:VAL374 3.8 66.4 1.0
C B:VAL374 3.8 39.7 1.0
C C:VAL374 3.8 66.4 1.0
CA D:GLY375 3.9 41.6 1.0
CA A:GLY375 3.9 49.8 1.0
CA B:GLY375 3.9 44.6 1.0
CA C:GLY375 4.0 48.2 1.0
N D:GLY375 4.3 41.6 1.0
N A:GLY375 4.3 49.8 1.0
N B:GLY375 4.3 44.6 1.0
N A:TYR376 4.4 66.4 1.0
N C:GLY375 4.4 48.2 1.0
N D:TYR376 4.4 66.4 1.0
N B:TYR376 4.6 66.4 1.0
N C:TYR376 4.7 66.4 1.0
CA A:TYR376 4.8 66.4 1.0
O A:TYR376 4.8 66.4 1.0
CA D:TYR376 4.8 66.4 1.0
O D:TYR376 4.9 66.4 1.0

Potassium binding site 3 out of 4 in 8sda

Go back to Potassium Binding Sites List in 8sda
Potassium binding site 3 out of 4 in the Cryoem Structure of Rat KV2.1(1-598) L403A Mutant in Nanodiscs


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Cryoem Structure of Rat KV2.1(1-598) L403A Mutant in Nanodiscs within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K609

b:124.6
occ:1.00
 O A:TYR376 2.3 66.4 1.0
O D:TYR376 2.4 66.4 1.0
O D:GLY375 3.0 41.6 1.0
O B:TYR376 3.0 66.4 1.0
O C:TYR376 3.0 66.4 1.0
O C:GLY375 3.0 48.2 1.0
O B:GLY375 3.0 44.6 1.0
O A:GLY375 3.1 49.8 1.0
C D:TYR376 3.3 66.4 1.0
C A:TYR376 3.3 66.4 1.0
K A:K608 3.5 72.8 1.0
C B:TYR376 3.6 66.4 1.0
C C:TYR376 3.6 66.4 1.0
CA D:TYR376 4.0 66.4 1.0
CA A:TYR376 4.0 66.4 1.0
C D:GLY375 4.1 41.6 1.0
C A:GLY375 4.2 49.8 1.0
C C:GLY375 4.2 48.2 1.0
C B:GLY375 4.2 44.6 1.0
N D:GLY377 4.2 51.9 1.0
CA B:TYR376 4.3 66.4 1.0
N B:GLY377 4.3 53.4 1.0
N C:GLY377 4.3 53.6 1.0
CA C:TYR376 4.3 66.4 1.0
N A:GLY377 4.3 53.8 1.0
CA D:GLY377 4.5 51.9 1.0
CA C:GLY377 4.5 53.6 1.0
CA B:GLY377 4.5 53.4 1.0
CA A:GLY377 4.5 53.8 1.0
N D:TYR376 4.6 66.4 1.0
N A:TYR376 4.6 66.4 1.0
N B:TYR376 4.7 66.4 1.0
N C:TYR376 4.7 66.4 1.0

Potassium binding site 4 out of 4 in 8sda

Go back to Potassium Binding Sites List in 8sda
Potassium binding site 4 out of 4 in the Cryoem Structure of Rat KV2.1(1-598) L403A Mutant in Nanodiscs


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Cryoem Structure of Rat KV2.1(1-598) L403A Mutant in Nanodiscs within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K604

b:35.7
occ:1.00
 OG1 D:THR373 2.8 38.2 1.0
O C:THR373 2.9 40.5 1.0
OG1 B:THR373 3.0 39.2 1.0
OG1 C:THR373 3.0 40.5 1.0
O A:THR373 3.1 37.2 1.0
O D:THR373 3.2 38.2 1.0
O B:THR373 3.2 39.2 1.0
OG1 A:THR373 3.3 37.2 1.0
CB B:THR373 3.5 39.2 1.0
K A:K607 3.6 35.7 1.0
CB C:THR373 3.7 40.5 1.0
CB D:THR373 3.7 38.2 1.0
C C:THR373 3.9 40.5 1.0
C D:THR373 4.0 38.2 1.0
C B:THR373 4.0 39.2 1.0
CB A:THR373 4.1 37.2 1.0
C A:THR373 4.2 37.2 1.0
CA B:THR373 4.4 39.2 1.0
CA C:THR373 4.5 40.5 1.0
CA D:THR373 4.5 38.2 1.0
CG2 B:THR373 4.6 39.2 1.0
O D:THR372 4.8 34.7 1.0
CA A:THR373 4.8 37.2 1.0
O C:THR372 4.9 40.4 1.0
CG2 D:THR373 4.9 38.2 1.0
CG2 C:THR373 4.9 40.5 1.0
N D:VAL374 5.0 45.0 1.0

Reference:

A.I.Fernandez-Marino, X.-F.Tan, C.Bae, K.Huffer, J.Jiang, K.J.Swartz. Cryoem Structure of Rat KV2.1(1-598) in Nanodiscs Nature 2023.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-023-06582-8
Page generated: Thu Dec 28 07:10:13 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy