Potassium in PDB 8riu: Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum

Enzymatic activity of Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum

All present enzymatic activity of Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum:
1.2.7.4;

Protein crystallography data

The structure of Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum, PDB code: 8riu was solved by O.N.Lemaire, T.Wagner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.80 / 1.89
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 97.07, 159.213, 191.444, 90, 90, 90
R / Rfree (%) 16.5 / 18.7

Other elements in 8riu:

The structure of Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Nickel (Ni) 2 atoms
Iron (Fe) 60 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum (pdb code 8riu). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum, PDB code: 8riu:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 8riu

Go back to Potassium Binding Sites List in 8riu
Potassium binding site 1 out of 2 in the Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K821

b:35.3
occ:1.00
 O A:CYS412 2.7 29.5 1.0
O C:PHE5 2.7 27.5 1.0
OD1 C:ASP6 2.8 30.2 1.0
O A:VAL409 2.9 28.3 1.0
O A:HOH1210 3.0 29.0 1.0
O A:ILE410 3.2 36.0 1.0
CD2 C:PHE5 3.5 28.9 1.0
O C:HOH302 3.5 28.0 1.0
C C:PHE5 3.6 32.4 1.0
CE2 C:PHE5 3.6 32.4 1.0
C A:ILE410 3.7 30.1 1.0
CG C:ASP6 3.7 34.6 1.0
CA A:GLY415 3.8 27.7 1.0
CA A:ILE410 3.8 29.7 1.0
C A:CYS412 3.8 29.5 1.0
N A:GLY415 3.9 30.9 1.0
C A:VAL409 4.0 27.6 1.0
CA C:ASP6 4.1 27.9 1.0
CG C:PHE5 4.1 29.1 1.0
N C:ASP6 4.2 29.8 1.0
N A:CYS412 4.2 31.5 1.0
N A:ILE410 4.4 27.3 1.0
CZ C:PHE5 4.4 33.2 1.0
CB C:ASP6 4.5 26.2 1.0
OD2 C:ASP6 4.6 32.1 1.0
CA A:CYS412 4.6 31.4 1.0
CA C:PHE5 4.7 30.1 1.0
N A:ALA411 4.7 33.5 1.0
CB C:PHE5 4.7 33.1 1.0
C A:PRO413 4.8 30.3 1.0
CD1 C:PHE5 4.8 30.4 1.0
O A:PRO413 4.8 32.5 1.0
N A:PRO413 4.8 30.4 1.0
C A:ALA411 4.8 30.1 1.0
CA A:PRO413 4.9 28.7 1.0
CE1 C:PHE5 4.9 29.6 1.0
CB A:CYS412 5.0 29.7 1.0
C A:GLN414 5.0 30.1 1.0

Potassium binding site 2 out of 2 in 8riu

Go back to Potassium Binding Sites List in 8riu
Potassium binding site 2 out of 2 in the Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of the F420-Reducing Carbon Monoxide Dehydrogenase Component From the Ethanotroph Candidatus Ethanoperedens Thermophilum within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K809

b:36.2
occ:1.00
 O F:PHE5 2.6 33.9 1.0
OD1 F:ASP6 2.7 34.7 1.0
O D:CYS412 2.7 34.4 1.0
O F:HOH601 2.9 30.5 1.0
O D:VAL409 2.9 33.8 1.0
O D:ILE410 3.2 32.4 1.0
CD2 F:PHE5 3.4 32.9 1.0
C F:PHE5 3.6 32.5 1.0
CE2 F:PHE5 3.6 35.8 1.0
O D:HOH1006 3.6 31.5 1.0
C D:ILE410 3.7 34.3 1.0
CA D:ILE410 3.7 30.8 1.0
CA D:GLY415 3.8 35.8 1.0
CG F:ASP6 3.8 35.0 1.0
C D:CYS412 3.9 34.0 1.0
N D:GLY415 3.9 30.7 1.0
C D:VAL409 4.0 31.6 1.0
CG F:PHE5 4.0 32.5 1.0
CA F:ASP6 4.1 28.4 1.0
N F:ASP6 4.2 30.0 1.0
N D:CYS412 4.2 32.0 1.0
CZ F:PHE5 4.3 32.4 1.0
N D:ILE410 4.3 36.0 1.0
CA F:PHE5 4.6 29.8 1.0
CA D:CYS412 4.6 32.2 1.0
CB F:ASP6 4.6 27.6 1.0
CB F:PHE5 4.6 34.8 1.0
N D:ALA411 4.6 31.6 1.0
CD1 F:PHE5 4.7 33.6 1.0
OD2 F:ASP6 4.7 30.5 1.0
CE1 F:PHE5 4.8 32.3 1.0
C D:ALA411 4.9 28.8 1.0
N D:PRO413 4.9 31.1 1.0
C D:PRO413 4.9 32.6 1.0
CB D:CYS412 4.9 35.3 1.0
CA D:PRO413 4.9 31.9 1.0
C D:GLN414 5.0 35.4 1.0

Reference:

O.N.Lemaire, G.Wegener, T.Wagner. F420 Reduction As A Cellular Driver For Anaerobic Ethanotrophy To Be Published.
Page generated: Thu Oct 31 21:34:19 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy