Atomistry » Potassium » PDB 8q0o-8rgt » 8qos
Atomistry »
  Potassium »
    PDB 8q0o-8rgt »
      8qos »

Potassium in PDB 8qos: Capra Hircus Reactive Intermediate Deaminase A - V25W

Protein crystallography data

The structure of Capra Hircus Reactive Intermediate Deaminase A - V25W, PDB code: 8qos was solved by G.Rizzi, C.Visentin, F.Di Pisa, S.Ricagno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.42 / 2.01
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 53.35, 72.669, 106.772, 90, 100.95, 90
R / Rfree (%) 23.8 / 28.5

Potassium Binding Sites:

The binding sites of Potassium atom in the Capra Hircus Reactive Intermediate Deaminase A - V25W (pdb code 8qos). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 3 binding sites of Potassium where determined in the Capra Hircus Reactive Intermediate Deaminase A - V25W, PDB code: 8qos:
Jump to Potassium binding site number: 1; 2; 3;

Potassium binding site 1 out of 3 in 8qos

Go back to Potassium Binding Sites List in 8qos
Potassium binding site 1 out of 3 in the Capra Hircus Reactive Intermediate Deaminase A - V25W


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Capra Hircus Reactive Intermediate Deaminase A - V25W within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K203

b:35.0
occ:1.00
OG1 D:THR80 3.5 22.2 1.0
CA D:ALA125 3.7 23.2 1.0
O D:GLU124 3.7 21.3 1.0
N D:ALA125 3.7 21.8 1.0
CG D:GLU124 3.8 19.6 1.0
C D:GLU124 3.8 23.4 1.0
CA D:ALA79 3.8 23.3 1.0
N D:THR80 3.9 24.1 1.0
CG D:LYS78 3.9 23.4 1.0
C D:ALA79 3.9 24.5 1.0
O D:LYS78 4.0 20.3 1.0
C D:ALA125 4.0 21.6 1.0
N D:ALA79 4.1 25.2 1.0
CG1 D:ILE126 4.1 22.0 1.0
C D:LYS78 4.2 24.3 1.0
CD1 D:ILE126 4.3 22.5 1.0
CB D:THR80 4.3 24.7 1.0
N D:ILE126 4.3 20.6 1.0
CD D:GLU124 4.3 26.8 1.0
CB D:GLU124 4.4 24.7 1.0
O D:HOH352 4.5 33.2 1.0
O D:ALA125 4.5 18.3 1.0
O D:ALA79 4.6 21.2 1.0
OE1 D:GLU124 4.6 28.1 1.0
CA D:THR80 4.7 21.7 1.0
CA D:GLU124 4.7 22.3 1.0
CD D:LYS78 4.8 26.5 1.0
CB D:LYS78 4.8 23.0 1.0
CE D:LYS78 4.8 26.7 1.0
OE2 D:GLU124 5.0 20.5 1.0

Potassium binding site 2 out of 3 in 8qos

Go back to Potassium Binding Sites List in 8qos
Potassium binding site 2 out of 3 in the Capra Hircus Reactive Intermediate Deaminase A - V25W


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Capra Hircus Reactive Intermediate Deaminase A - V25W within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K201

b:37.2
occ:1.00
OG1 E:THR80 3.2 27.6 1.0
O E:GLU124 3.8 23.6 1.0
N E:THR80 3.9 23.8 1.0
CA E:ALA125 3.9 20.9 1.0
CA E:ALA79 3.9 21.5 1.0
C E:ALA79 3.9 26.3 1.0
N E:ALA125 4.0 20.6 1.0
C E:GLU124 4.0 18.4 1.0
O E:LYS78 4.0 18.6 1.0
CG E:GLU124 4.0 30.3 1.0
CB E:THR80 4.1 24.9 1.0
CG E:LYS78 4.1 25.0 1.0
N E:ALA79 4.2 24.0 1.0
C E:LYS78 4.2 21.4 1.0
C E:ALA125 4.2 19.7 1.0
CG1 E:ILE126 4.2 23.3 1.0
CD E:LYS78 4.4 22.5 1.0
CD1 E:ILE126 4.4 23.6 1.0
CE E:LYS78 4.4 23.1 1.0
N E:ILE126 4.5 18.9 1.0
OE2 E:GLU124 4.5 36.0 1.0
CD E:GLU124 4.5 35.4 1.0
CB E:GLU124 4.5 26.2 1.0
O E:ALA79 4.6 23.2 1.0
CA E:THR80 4.6 22.8 1.0
O D:HOH324 4.6 18.9 1.0
CB E:LYS78 4.7 20.8 1.0
NZ D:LYS78 4.8 35.6 1.0
O E:ALA125 4.8 20.7 1.0
CA E:GLU124 4.9 20.1 1.0

Potassium binding site 3 out of 3 in 8qos

Go back to Potassium Binding Sites List in 8qos
Potassium binding site 3 out of 3 in the Capra Hircus Reactive Intermediate Deaminase A - V25W


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Capra Hircus Reactive Intermediate Deaminase A - V25W within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K201

b:34.7
occ:1.00
CA F:ALA125 3.6 21.3 1.0
N F:ALA125 3.6 24.1 1.0
OG1 F:THR80 3.7 27.3 1.0
O F:GLU124 3.7 22.4 1.0
C F:GLU124 3.8 24.0 1.0
CA F:ALA79 3.9 21.3 1.0
CG F:GLU124 3.9 26.0 1.0
C F:ALA125 3.9 24.9 1.0
N F:THR80 4.0 21.9 1.0
C F:ALA79 4.1 24.8 1.0
CG F:LYS78 4.1 24.7 1.0
CG1 F:ILE126 4.1 23.9 1.0
NZ E:LYS78 4.1 26.3 1.0
N F:ALA79 4.2 20.4 1.0
CB F:GLU124 4.2 27.3 1.0
N F:ILE126 4.2 19.0 1.0
CD F:GLU124 4.3 30.4 1.0
O F:LYS78 4.3 24.7 1.0
OE1 F:GLU124 4.3 27.8 1.0
O E:HOH318 4.3 19.8 1.0
O F:ALA125 4.4 24.9 1.0
CB F:THR80 4.4 26.7 1.0
C F:LYS78 4.4 23.6 1.0
CD1 F:ILE126 4.5 23.2 1.0
CA F:GLU124 4.7 24.1 1.0
O F:ALA79 4.8 21.3 1.0
CA F:THR80 4.8 20.9 1.0
CB F:ILE126 4.9 19.8 1.0
CB F:LYS78 5.0 20.8 1.0

Reference:

G.Rizzi, C.Visentin, F.Di Pisa, S.Ricagno. Capra Hircus Reactive Intermediate Deaminase A - V25W To Be Published.
Page generated: Tue Aug 13 00:29:30 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy