Potassium in PDB 8qos: Capra Hircus Reactive Intermediate Deaminase A - V25W
Protein crystallography data
The structure of Capra Hircus Reactive Intermediate Deaminase A - V25W, PDB code: 8qos
was solved by
G.Rizzi,
C.Visentin,
F.Di Pisa,
S.Ricagno,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
37.42 /
2.01
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
53.35,
72.669,
106.772,
90,
100.95,
90
|
R / Rfree (%)
|
23.8 /
28.5
|
Potassium Binding Sites:
The binding sites of Potassium atom in the Capra Hircus Reactive Intermediate Deaminase A - V25W
(pdb code 8qos). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 3 binding sites of Potassium where determined in the
Capra Hircus Reactive Intermediate Deaminase A - V25W, PDB code: 8qos:
Jump to Potassium binding site number:
1;
2;
3;
Potassium binding site 1 out
of 3 in 8qos
Go back to
Potassium Binding Sites List in 8qos
Potassium binding site 1 out
of 3 in the Capra Hircus Reactive Intermediate Deaminase A - V25W
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Capra Hircus Reactive Intermediate Deaminase A - V25W within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:K203
b:35.0
occ:1.00
|
OG1
|
D:THR80
|
3.5
|
22.2
|
1.0
|
CA
|
D:ALA125
|
3.7
|
23.2
|
1.0
|
O
|
D:GLU124
|
3.7
|
21.3
|
1.0
|
N
|
D:ALA125
|
3.7
|
21.8
|
1.0
|
CG
|
D:GLU124
|
3.8
|
19.6
|
1.0
|
C
|
D:GLU124
|
3.8
|
23.4
|
1.0
|
CA
|
D:ALA79
|
3.8
|
23.3
|
1.0
|
N
|
D:THR80
|
3.9
|
24.1
|
1.0
|
CG
|
D:LYS78
|
3.9
|
23.4
|
1.0
|
C
|
D:ALA79
|
3.9
|
24.5
|
1.0
|
O
|
D:LYS78
|
4.0
|
20.3
|
1.0
|
C
|
D:ALA125
|
4.0
|
21.6
|
1.0
|
N
|
D:ALA79
|
4.1
|
25.2
|
1.0
|
CG1
|
D:ILE126
|
4.1
|
22.0
|
1.0
|
C
|
D:LYS78
|
4.2
|
24.3
|
1.0
|
CD1
|
D:ILE126
|
4.3
|
22.5
|
1.0
|
CB
|
D:THR80
|
4.3
|
24.7
|
1.0
|
N
|
D:ILE126
|
4.3
|
20.6
|
1.0
|
CD
|
D:GLU124
|
4.3
|
26.8
|
1.0
|
CB
|
D:GLU124
|
4.4
|
24.7
|
1.0
|
O
|
D:HOH352
|
4.5
|
33.2
|
1.0
|
O
|
D:ALA125
|
4.5
|
18.3
|
1.0
|
O
|
D:ALA79
|
4.6
|
21.2
|
1.0
|
OE1
|
D:GLU124
|
4.6
|
28.1
|
1.0
|
CA
|
D:THR80
|
4.7
|
21.7
|
1.0
|
CA
|
D:GLU124
|
4.7
|
22.3
|
1.0
|
CD
|
D:LYS78
|
4.8
|
26.5
|
1.0
|
CB
|
D:LYS78
|
4.8
|
23.0
|
1.0
|
CE
|
D:LYS78
|
4.8
|
26.7
|
1.0
|
OE2
|
D:GLU124
|
5.0
|
20.5
|
1.0
|
|
Potassium binding site 2 out
of 3 in 8qos
Go back to
Potassium Binding Sites List in 8qos
Potassium binding site 2 out
of 3 in the Capra Hircus Reactive Intermediate Deaminase A - V25W
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Capra Hircus Reactive Intermediate Deaminase A - V25W within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:K201
b:37.2
occ:1.00
|
OG1
|
E:THR80
|
3.2
|
27.6
|
1.0
|
O
|
E:GLU124
|
3.8
|
23.6
|
1.0
|
N
|
E:THR80
|
3.9
|
23.8
|
1.0
|
CA
|
E:ALA125
|
3.9
|
20.9
|
1.0
|
CA
|
E:ALA79
|
3.9
|
21.5
|
1.0
|
C
|
E:ALA79
|
3.9
|
26.3
|
1.0
|
N
|
E:ALA125
|
4.0
|
20.6
|
1.0
|
C
|
E:GLU124
|
4.0
|
18.4
|
1.0
|
O
|
E:LYS78
|
4.0
|
18.6
|
1.0
|
CG
|
E:GLU124
|
4.0
|
30.3
|
1.0
|
CB
|
E:THR80
|
4.1
|
24.9
|
1.0
|
CG
|
E:LYS78
|
4.1
|
25.0
|
1.0
|
N
|
E:ALA79
|
4.2
|
24.0
|
1.0
|
C
|
E:LYS78
|
4.2
|
21.4
|
1.0
|
C
|
E:ALA125
|
4.2
|
19.7
|
1.0
|
CG1
|
E:ILE126
|
4.2
|
23.3
|
1.0
|
CD
|
E:LYS78
|
4.4
|
22.5
|
1.0
|
CD1
|
E:ILE126
|
4.4
|
23.6
|
1.0
|
CE
|
E:LYS78
|
4.4
|
23.1
|
1.0
|
N
|
E:ILE126
|
4.5
|
18.9
|
1.0
|
OE2
|
E:GLU124
|
4.5
|
36.0
|
1.0
|
CD
|
E:GLU124
|
4.5
|
35.4
|
1.0
|
CB
|
E:GLU124
|
4.5
|
26.2
|
1.0
|
O
|
E:ALA79
|
4.6
|
23.2
|
1.0
|
CA
|
E:THR80
|
4.6
|
22.8
|
1.0
|
O
|
D:HOH324
|
4.6
|
18.9
|
1.0
|
CB
|
E:LYS78
|
4.7
|
20.8
|
1.0
|
NZ
|
D:LYS78
|
4.8
|
35.6
|
1.0
|
O
|
E:ALA125
|
4.8
|
20.7
|
1.0
|
CA
|
E:GLU124
|
4.9
|
20.1
|
1.0
|
|
Potassium binding site 3 out
of 3 in 8qos
Go back to
Potassium Binding Sites List in 8qos
Potassium binding site 3 out
of 3 in the Capra Hircus Reactive Intermediate Deaminase A - V25W
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Capra Hircus Reactive Intermediate Deaminase A - V25W within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:K201
b:34.7
occ:1.00
|
CA
|
F:ALA125
|
3.6
|
21.3
|
1.0
|
N
|
F:ALA125
|
3.6
|
24.1
|
1.0
|
OG1
|
F:THR80
|
3.7
|
27.3
|
1.0
|
O
|
F:GLU124
|
3.7
|
22.4
|
1.0
|
C
|
F:GLU124
|
3.8
|
24.0
|
1.0
|
CA
|
F:ALA79
|
3.9
|
21.3
|
1.0
|
CG
|
F:GLU124
|
3.9
|
26.0
|
1.0
|
C
|
F:ALA125
|
3.9
|
24.9
|
1.0
|
N
|
F:THR80
|
4.0
|
21.9
|
1.0
|
C
|
F:ALA79
|
4.1
|
24.8
|
1.0
|
CG
|
F:LYS78
|
4.1
|
24.7
|
1.0
|
CG1
|
F:ILE126
|
4.1
|
23.9
|
1.0
|
NZ
|
E:LYS78
|
4.1
|
26.3
|
1.0
|
N
|
F:ALA79
|
4.2
|
20.4
|
1.0
|
CB
|
F:GLU124
|
4.2
|
27.3
|
1.0
|
N
|
F:ILE126
|
4.2
|
19.0
|
1.0
|
CD
|
F:GLU124
|
4.3
|
30.4
|
1.0
|
O
|
F:LYS78
|
4.3
|
24.7
|
1.0
|
OE1
|
F:GLU124
|
4.3
|
27.8
|
1.0
|
O
|
E:HOH318
|
4.3
|
19.8
|
1.0
|
O
|
F:ALA125
|
4.4
|
24.9
|
1.0
|
CB
|
F:THR80
|
4.4
|
26.7
|
1.0
|
C
|
F:LYS78
|
4.4
|
23.6
|
1.0
|
CD1
|
F:ILE126
|
4.5
|
23.2
|
1.0
|
CA
|
F:GLU124
|
4.7
|
24.1
|
1.0
|
O
|
F:ALA79
|
4.8
|
21.3
|
1.0
|
CA
|
F:THR80
|
4.8
|
20.9
|
1.0
|
CB
|
F:ILE126
|
4.9
|
19.8
|
1.0
|
CB
|
F:LYS78
|
5.0
|
20.8
|
1.0
|
|
Reference:
G.Rizzi,
C.Visentin,
F.Di Pisa,
S.Ricagno.
Capra Hircus Reactive Intermediate Deaminase A - V25W To Be Published.
Page generated: Tue Aug 13 00:29:30 2024
|