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Potassium in PDB 8qos: Capra Hircus Reactive Intermediate Deaminase A - V25W

Protein crystallography data

The structure of Capra Hircus Reactive Intermediate Deaminase A - V25W, PDB code: 8qos was solved by G.Rizzi, C.Visentin, F.Di Pisa, S.Ricagno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.42 / 2.01
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 53.35, 72.669, 106.772, 90, 100.95, 90
R / Rfree (%) 23.8 / 28.5

Potassium Binding Sites:

The binding sites of Potassium atom in the Capra Hircus Reactive Intermediate Deaminase A - V25W (pdb code 8qos). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 3 binding sites of Potassium where determined in the Capra Hircus Reactive Intermediate Deaminase A - V25W, PDB code: 8qos:
Jump to Potassium binding site number: 1; 2; 3;

Potassium binding site 1 out of 3 in 8qos

Go back to Potassium Binding Sites List in 8qos
Potassium binding site 1 out of 3 in the Capra Hircus Reactive Intermediate Deaminase A - V25W


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Capra Hircus Reactive Intermediate Deaminase A - V25W within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K203

b:35.0
occ:1.00
OG1 D:THR80 3.5 22.2 1.0
CA D:ALA125 3.7 23.2 1.0
O D:GLU124 3.7 21.3 1.0
N D:ALA125 3.7 21.8 1.0
CG D:GLU124 3.8 19.6 1.0
C D:GLU124 3.8 23.4 1.0
CA D:ALA79 3.8 23.3 1.0
N D:THR80 3.9 24.1 1.0
CG D:LYS78 3.9 23.4 1.0
C D:ALA79 3.9 24.5 1.0
O D:LYS78 4.0 20.3 1.0
C D:ALA125 4.0 21.6 1.0
N D:ALA79 4.1 25.2 1.0
CG1 D:ILE126 4.1 22.0 1.0
C D:LYS78 4.2 24.3 1.0
CD1 D:ILE126 4.3 22.5 1.0
CB D:THR80 4.3 24.7 1.0
N D:ILE126 4.3 20.6 1.0
CD D:GLU124 4.3 26.8 1.0
CB D:GLU124 4.4 24.7 1.0
O D:HOH352 4.5 33.2 1.0
O D:ALA125 4.5 18.3 1.0
O D:ALA79 4.6 21.2 1.0
OE1 D:GLU124 4.6 28.1 1.0
CA D:THR80 4.7 21.7 1.0
CA D:GLU124 4.7 22.3 1.0
CD D:LYS78 4.8 26.5 1.0
CB D:LYS78 4.8 23.0 1.0
CE D:LYS78 4.8 26.7 1.0
OE2 D:GLU124 5.0 20.5 1.0

Potassium binding site 2 out of 3 in 8qos

Go back to Potassium Binding Sites List in 8qos
Potassium binding site 2 out of 3 in the Capra Hircus Reactive Intermediate Deaminase A - V25W


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Capra Hircus Reactive Intermediate Deaminase A - V25W within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K201

b:37.2
occ:1.00
OG1 E:THR80 3.2 27.6 1.0
O E:GLU124 3.8 23.6 1.0
N E:THR80 3.9 23.8 1.0
CA E:ALA125 3.9 20.9 1.0
CA E:ALA79 3.9 21.5 1.0
C E:ALA79 3.9 26.3 1.0
N E:ALA125 4.0 20.6 1.0
C E:GLU124 4.0 18.4 1.0
O E:LYS78 4.0 18.6 1.0
CG E:GLU124 4.0 30.3 1.0
CB E:THR80 4.1 24.9 1.0
CG E:LYS78 4.1 25.0 1.0
N E:ALA79 4.2 24.0 1.0
C E:LYS78 4.2 21.4 1.0
C E:ALA125 4.2 19.7 1.0
CG1 E:ILE126 4.2 23.3 1.0
CD E:LYS78 4.4 22.5 1.0
CD1 E:ILE126 4.4 23.6 1.0
CE E:LYS78 4.4 23.1 1.0
N E:ILE126 4.5 18.9 1.0
OE2 E:GLU124 4.5 36.0 1.0
CD E:GLU124 4.5 35.4 1.0
CB E:GLU124 4.5 26.2 1.0
O E:ALA79 4.6 23.2 1.0
CA E:THR80 4.6 22.8 1.0
O D:HOH324 4.6 18.9 1.0
CB E:LYS78 4.7 20.8 1.0
NZ D:LYS78 4.8 35.6 1.0
O E:ALA125 4.8 20.7 1.0
CA E:GLU124 4.9 20.1 1.0

Potassium binding site 3 out of 3 in 8qos

Go back to Potassium Binding Sites List in 8qos
Potassium binding site 3 out of 3 in the Capra Hircus Reactive Intermediate Deaminase A - V25W


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Capra Hircus Reactive Intermediate Deaminase A - V25W within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K201

b:34.7
occ:1.00
CA F:ALA125 3.6 21.3 1.0
N F:ALA125 3.6 24.1 1.0
OG1 F:THR80 3.7 27.3 1.0
O F:GLU124 3.7 22.4 1.0
C F:GLU124 3.8 24.0 1.0
CA F:ALA79 3.9 21.3 1.0
CG F:GLU124 3.9 26.0 1.0
C F:ALA125 3.9 24.9 1.0
N F:THR80 4.0 21.9 1.0
C F:ALA79 4.1 24.8 1.0
CG F:LYS78 4.1 24.7 1.0
CG1 F:ILE126 4.1 23.9 1.0
NZ E:LYS78 4.1 26.3 1.0
N F:ALA79 4.2 20.4 1.0
CB F:GLU124 4.2 27.3 1.0
N F:ILE126 4.2 19.0 1.0
CD F:GLU124 4.3 30.4 1.0
O F:LYS78 4.3 24.7 1.0
OE1 F:GLU124 4.3 27.8 1.0
O E:HOH318 4.3 19.8 1.0
O F:ALA125 4.4 24.9 1.0
CB F:THR80 4.4 26.7 1.0
C F:LYS78 4.4 23.6 1.0
CD1 F:ILE126 4.5 23.2 1.0
CA F:GLU124 4.7 24.1 1.0
O F:ALA79 4.8 21.3 1.0
CA F:THR80 4.8 20.9 1.0
CB F:ILE126 4.9 19.8 1.0
CB F:LYS78 5.0 20.8 1.0

Reference:

G.Rizzi, C.Visentin, F.Di Pisa, S.Ricagno. Capra Hircus Reactive Intermediate Deaminase A - V25W To Be Published.
Page generated: Tue Aug 13 00:29:30 2024

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