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Potassium in PDB 8p4p: Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography

Other elements in 8p4p:

The structure of Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography also contains other interesting chemical elements:

Magnesium (Mg) 14 atoms

Potassium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Potassium atom in the Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography (pdb code 8p4p). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 14 binding sites of Potassium where determined in the Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography, PDB code: 8p4p:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 14 in 8p4p

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Potassium binding site 1 out of 14 in the Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K603

b:347.1
occ:1.00
 O1G A:ATP601 2.8 326.0 1.0
OG1 A:THR90 2.8 540.6 1.0
O1A A:ATP601 2.9 326.0 1.0
O A:THR30 2.9 291.5 1.0
NZ A:LYS51 2.9 302.5 1.0
O3A A:ATP601 3.0 326.0 1.0
O A:LYS51 3.2 302.5 1.0
O3G A:ATP601 3.3 326.0 1.0
PG A:ATP601 3.4 326.0 1.0
PA A:ATP601 3.5 326.0 1.0
CG A:LYS51 3.7 302.5 1.0
C A:LYS51 3.8 302.5 1.0
O3B A:ATP601 3.8 326.0 1.0
CB A:THR90 3.8 540.6 1.0
MG A:MG602 3.9 340.3 1.0
CA A:ASP52 3.9 226.3 1.0
CE A:LYS51 4.0 302.5 1.0
PB A:ATP601 4.0 326.0 1.0
C A:THR30 4.1 291.5 1.0
N A:ASP52 4.1 226.3 1.0
CD A:LYS51 4.2 302.5 1.0
O5' A:ATP601 4.2 326.0 1.0
CG2 A:THR90 4.5 540.6 1.0
O2B A:ATP601 4.5 326.0 1.0
N A:GLY53 4.5 209.6 1.0
CB A:LYS51 4.5 302.5 1.0
C A:ASP52 4.5 226.3 1.0
OG1 A:THR30 4.6 291.5 1.0
CB A:THR30 4.7 291.5 1.0
O2A A:ATP601 4.8 326.0 1.0
CA A:LYS51 4.8 302.5 1.0
CA A:LEU31 4.9 206.2 1.0
O2G A:ATP601 4.9 326.0 1.0
N A:LEU31 5.0 206.2 1.0
CB A:ASP52 5.0 226.3 1.0

Potassium binding site 2 out of 14 in 8p4p

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Potassium binding site 2 out of 14 in the Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K603

b:446.2
occ:1.00
 O1G B:ATP601 2.8 412.3 1.0
OG1 B:THR90 2.8 581.9 1.0
O1A B:ATP601 2.9 412.3 1.0
O B:THR30 2.9 266.5 1.0
NZ B:LYS51 2.9 362.8 1.0
O3A B:ATP601 2.9 412.3 1.0
O B:LYS51 3.1 362.8 1.0
O3G B:ATP601 3.3 412.3 1.0
PG B:ATP601 3.4 412.3 1.0
PA B:ATP601 3.5 412.3 1.0
CG B:LYS51 3.7 362.8 1.0
O3B B:ATP601 3.7 412.3 1.0
C B:LYS51 3.7 362.8 1.0
CB B:THR90 3.8 581.9 1.0
MG B:MG602 3.9 406.3 1.0
CA B:ASP52 3.9 352.5 1.0
PB B:ATP601 4.0 412.3 1.0
CE B:LYS51 4.0 362.8 1.0
N B:ASP52 4.1 352.5 1.0
CD B:LYS51 4.1 362.8 1.0
C B:THR30 4.1 266.5 1.0
OG1 B:THR30 4.1 266.5 1.0
O5' B:ATP601 4.3 412.3 1.0
CB B:LYS51 4.4 362.8 1.0
O2B B:ATP601 4.5 412.3 1.0
CG2 B:THR90 4.5 581.9 1.0
N B:GLY53 4.5 306.1 1.0
C B:ASP52 4.6 352.5 1.0
CA B:LYS51 4.7 362.8 1.0
O2A B:ATP601 4.7 412.3 1.0
CB B:THR30 4.7 266.5 1.0
CA B:LEU31 4.8 203.8 1.0
O2G B:ATP601 4.9 412.3 1.0
N B:LEU31 4.9 203.8 1.0
CB B:ASP52 5.0 352.5 1.0

Potassium binding site 3 out of 14 in 8p4p

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Potassium binding site 3 out of 14 in the Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K603

b:370.0
occ:1.00
 O1G C:ATP601 2.8 342.9 1.0
OG1 C:THR90 2.9 538.4 1.0
O1A C:ATP601 2.9 342.9 1.0
O C:THR30 2.9 289.4 1.0
NZ C:LYS51 2.9 341.4 1.0
O3A C:ATP601 3.0 342.9 1.0
O C:LYS51 3.0 341.4 1.0
O3G C:ATP601 3.3 342.9 1.0
PG C:ATP601 3.4 342.9 1.0
PA C:ATP601 3.5 342.9 1.0
CG C:LYS51 3.6 341.4 1.0
C C:LYS51 3.7 341.4 1.0
O3B C:ATP601 3.7 342.9 1.0
CB C:THR90 3.8 538.4 1.0
CA C:ASP52 3.8 267.4 1.0
MG C:MG602 3.9 324.3 1.0
CE C:LYS51 4.0 341.4 1.0
PB C:ATP601 4.0 342.9 1.0
N C:ASP52 4.1 267.4 1.0
CD C:LYS51 4.1 341.4 1.0
OG1 C:THR30 4.1 289.4 1.0
C C:THR30 4.1 289.4 1.0
O5' C:ATP601 4.3 342.9 1.0
CB C:LYS51 4.4 341.4 1.0
CG2 C:THR90 4.5 538.4 1.0
C C:ASP52 4.5 267.4 1.0
O2B C:ATP601 4.5 342.9 1.0
N C:GLY53 4.5 234.5 1.0
CA C:LYS51 4.6 341.4 1.0
CB C:THR30 4.7 289.4 1.0
O2A C:ATP601 4.8 342.9 1.0
CA C:LEU31 4.8 288.7 1.0
O2G C:ATP601 4.9 342.9 1.0
CB C:ASP52 5.0 267.4 1.0
N C:LEU31 5.0 288.7 1.0

Potassium binding site 4 out of 14 in 8p4p

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Potassium binding site 4 out of 14 in the Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K603

b:418.2
occ:1.00
 O1G D:ATP601 2.8 391.6 1.0
OG1 D:THR90 2.8 575.9 1.0
O D:THR30 2.8 326.8 1.0
O1A D:ATP601 2.9 391.6 1.0
NZ D:LYS51 2.9 414.3 1.0
O3A D:ATP601 3.0 391.6 1.0
O D:LYS51 3.2 414.3 1.0
O3G D:ATP601 3.3 391.6 1.0
PG D:ATP601 3.4 391.6 1.0
PA D:ATP601 3.5 391.6 1.0
CG D:LYS51 3.8 414.3 1.0
O3B D:ATP601 3.8 391.6 1.0
CB D:THR90 3.8 575.9 1.0
C D:LYS51 3.8 414.3 1.0
MG D:MG602 3.9 371.8 1.0
CA D:ASP52 3.9 347.8 1.0
CE D:LYS51 4.1 414.3 1.0
PB D:ATP601 4.1 391.6 1.0
C D:THR30 4.1 326.8 1.0
N D:ASP52 4.2 347.8 1.0
CD D:LYS51 4.2 414.3 1.0
O5' D:ATP601 4.3 391.6 1.0
CG2 D:THR90 4.5 575.9 1.0
O2B D:ATP601 4.5 391.6 1.0
N D:GLY53 4.5 332.6 1.0
OG1 D:THR30 4.5 326.8 1.0
CB D:LYS51 4.6 414.3 1.0
C D:ASP52 4.6 347.8 1.0
CB D:THR30 4.6 326.8 1.0
O2A D:ATP601 4.8 391.6 1.0
CA D:LYS51 4.8 414.3 1.0
CA D:LEU31 4.9 218.8 1.0
O2G D:ATP601 4.9 391.6 1.0
N D:LEU31 4.9 218.8 1.0
CA D:THR30 5.0 326.8 1.0

Potassium binding site 5 out of 14 in 8p4p

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Potassium binding site 5 out of 14 in the Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K603

b:411.3
occ:1.00
 O1G E:ATP601 2.8 339.7 1.0
O E:THR30 2.8 257.6 1.0
OG1 E:THR90 2.8 554.6 1.0
O1A E:ATP601 2.9 339.7 1.0
NZ E:LYS51 3.0 402.3 1.0
O E:LYS51 3.0 402.3 1.0
O3A E:ATP601 3.0 339.7 1.0
O3G E:ATP601 3.4 339.7 1.0
PG E:ATP601 3.5 339.7 1.0
PA E:ATP601 3.5 339.7 1.0
C E:LYS51 3.7 402.3 1.0
CG E:LYS51 3.7 402.3 1.0
CA E:ASP52 3.8 305.4 1.0
O3B E:ATP601 3.9 339.7 1.0
CB E:THR90 3.9 554.6 1.0
MG E:MG602 3.9 320.4 1.0
CE E:LYS51 4.1 402.3 1.0
N E:ASP52 4.1 305.4 1.0
C E:THR30 4.1 257.6 1.0
CD E:LYS51 4.1 402.3 1.0
PB E:ATP601 4.1 339.7 1.0
O5' E:ATP601 4.3 339.7 1.0
CB E:LYS51 4.4 402.3 1.0
N E:GLY53 4.5 271.1 1.0
C E:ASP52 4.5 305.4 1.0
CG2 E:THR90 4.5 554.6 1.0
OG1 E:THR30 4.5 257.6 1.0
O2B E:ATP601 4.6 339.7 1.0
CB E:THR30 4.6 257.6 1.0
CA E:LYS51 4.7 402.3 1.0
O2A E:ATP601 4.8 339.7 1.0
CA E:LEU31 4.9 162.3 1.0
N E:LEU31 4.9 162.3 1.0
CB E:ASP52 4.9 305.4 1.0
O2G E:ATP601 5.0 339.7 1.0
CA E:THR30 5.0 257.6 1.0

Potassium binding site 6 out of 14 in 8p4p

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Potassium binding site 6 out of 14 in the Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K603

b:443.5
occ:1.00
 O1G F:ATP601 2.8 374.6 1.0
OG1 F:THR90 2.9 561.7 1.0
O F:THR30 2.9 349.7 1.0
O1A F:ATP601 2.9 374.6 1.0
NZ F:LYS51 2.9 443.2 1.0
O F:LYS51 3.0 443.2 1.0
O3A F:ATP601 3.1 374.6 1.0
O3G F:ATP601 3.4 374.6 1.0
PG F:ATP601 3.5 374.6 1.0
PA F:ATP601 3.5 374.6 1.0
C F:LYS51 3.7 443.2 1.0
CG F:LYS51 3.7 443.2 1.0
CA F:ASP52 3.8 398.1 1.0
O3B F:ATP601 3.9 374.6 1.0
CB F:THR90 3.9 561.7 1.0
MG F:MG602 3.9 399.1 1.0
CE F:LYS51 4.0 443.2 1.0
N F:ASP52 4.1 398.1 1.0
C F:THR30 4.1 349.7 1.0
PB F:ATP601 4.1 374.6 1.0
CD F:LYS51 4.2 443.2 1.0
O5' F:ATP601 4.3 374.6 1.0
N F:GLY53 4.4 320.3 1.0
CB F:LYS51 4.4 443.2 1.0
C F:ASP52 4.5 398.1 1.0
OG1 F:THR30 4.5 349.7 1.0
CG2 F:THR90 4.5 561.7 1.0
CB F:THR30 4.6 349.7 1.0
O2B F:ATP601 4.6 374.6 1.0
CA F:LYS51 4.7 443.2 1.0
O2A F:ATP601 4.8 374.6 1.0
CA F:LEU31 4.9 264.9 1.0
CB F:ASP52 4.9 398.1 1.0
O2G F:ATP601 4.9 374.6 1.0
N F:LEU31 5.0 264.9 1.0
CA F:THR30 5.0 349.7 1.0

Potassium binding site 7 out of 14 in 8p4p

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Potassium binding site 7 out of 14 in the Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
G:K603

b:393.2
occ:1.00
 O1G G:ATP601 2.8 398.4 1.0
OG1 G:THR90 2.8 603.3 1.0
O1A G:ATP601 2.9 398.4 1.0
O G:THR30 2.9 268.8 1.0
O3A G:ATP601 2.9 398.4 1.0
NZ G:LYS51 2.9 370.1 1.0
O G:LYS51 3.1 370.1 1.0
O3G G:ATP601 3.4 398.4 1.0
PA G:ATP601 3.4 398.4 1.0
PG G:ATP601 3.4 398.4 1.0
CG G:LYS51 3.7 370.1 1.0
C G:LYS51 3.7 370.1 1.0
O3B G:ATP601 3.8 398.4 1.0
CB G:THR90 3.8 603.3 1.0
MG G:MG602 3.8 360.6 1.0
CA G:ASP52 3.9 263.1 1.0
PB G:ATP601 4.0 398.4 1.0
CE G:LYS51 4.0 370.1 1.0
C G:THR30 4.1 268.8 1.0
CD G:LYS51 4.1 370.1 1.0
N G:ASP52 4.1 263.1 1.0
O5' G:ATP601 4.2 398.4 1.0
O2B G:ATP601 4.4 398.4 1.0
CB G:LYS51 4.4 370.1 1.0
CG2 G:THR90 4.5 603.3 1.0
N G:GLY53 4.6 258.2 1.0
OG1 G:THR30 4.6 268.8 1.0
C G:ASP52 4.6 263.1 1.0
CB G:THR30 4.7 268.8 1.0
CA G:LYS51 4.7 370.1 1.0
O2A G:ATP601 4.7 398.4 1.0
CA G:LEU31 4.8 203.5 1.0
O2G G:ATP601 4.9 398.4 1.0
N G:LEU31 4.9 203.5 1.0

Potassium binding site 8 out of 14 in 8p4p

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Potassium binding site 8 out of 14 in the Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
H:K603

b:356.9
occ:1.00
 O H:GLY32 2.8 396.9 1.0
OD1 H:ASN153 2.8 577.2 1.0
O1A H:ADP601 2.9 283.7 1.0
ND2 H:ASN153 2.9 577.2 1.0
PA H:ADP601 3.2 283.7 1.0
CG H:ASN153 3.2 577.2 1.0
O5' H:ADP601 3.3 283.7 1.0
C5' H:ADP601 3.3 283.7 1.0
O2A H:ADP601 3.3 283.7 1.0
C H:GLY32 3.9 396.9 1.0
O H:HOH701 3.9 400.2 1.0
O H:LYS51 4.0 403.5 1.0
O H:THR30 4.1 523.6 1.0
CA H:PRO33 4.2 381.6 1.0
OD1 H:ASP52 4.2 351.3 1.0
C H:PRO33 4.4 381.6 1.0
N H:PRO33 4.5 381.6 1.0
O H:PRO33 4.5 381.6 1.0
CB H:ASN153 4.6 577.2 1.0
C4' H:ADP601 4.7 283.7 1.0
O3A H:ADP601 4.8 283.7 1.0
N H:GLY32 4.9 396.9 1.0
O H:HOH702 4.9 322.8 1.0
CA H:GLY32 5.0 396.9 1.0

Potassium binding site 9 out of 14 in 8p4p

Go back to Potassium Binding Sites List in 8p4p
Potassium binding site 9 out of 14 in the Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
I:K603

b:217.6
occ:1.00
 O I:GLY32 2.8 329.0 1.0
OD1 I:ASN153 2.8 518.4 1.0
O1A I:ADP601 2.8 222.1 1.0
ND2 I:ASN153 2.9 518.4 1.0
PA I:ADP601 3.2 222.1 1.0
CG I:ASN153 3.2 518.4 1.0
O2A I:ADP601 3.2 222.1 1.0
C5' I:ADP601 3.4 222.1 1.0
O5' I:ADP601 3.4 222.1 1.0
O I:HOH701 3.8 279.9 1.0
C I:GLY32 3.9 329.0 1.0
O I:LYS51 4.0 331.2 1.0
O I:THR30 4.1 516.0 1.0
CA I:PRO33 4.2 320.5 1.0
OD1 I:ASP52 4.2 248.4 1.0
C I:PRO33 4.5 320.5 1.0
N I:PRO33 4.5 320.5 1.0
O I:PRO33 4.5 320.5 1.0
CB I:ASN153 4.6 518.4 1.0
O I:HOH702 4.7 226.4 1.0
O3A I:ADP601 4.8 222.1 1.0
N I:GLY32 4.8 329.0 1.0
C4' I:ADP601 4.9 222.1 1.0
CA I:GLY32 5.0 329.0 1.0

Potassium binding site 10 out of 14 in 8p4p

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Potassium binding site 10 out of 14 in the Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Structure Average of GROEL14 Complexes Found in the Cytosol of Escherichia Coli Overexpressing Groel Obtained By Cryo Electron Tomography within 5.0Å range:
probe atom residue distance (Å) B Occ
J:K603

b:242.4
occ:1.00
 O J:GLY32 2.8 345.6 1.0
OD1 J:ASN153 2.8 554.6 1.0
O1A J:ADP601 2.8 267.6 1.0
ND2 J:ASN153 2.9 554.6 1.0
PA J:ADP601 3.2 267.6 1.0
CG J:ASN153 3.2 554.6 1.0
C5' J:ADP601 3.3 267.6 1.0
O2A J:ADP601 3.3 267.6 1.0
O5' J:ADP601 3.3 267.6 1.0
O J:HOH701 3.8 309.8 1.0
C J:GLY32 3.9 345.6 1.0
O J:LYS51 4.0 297.6 1.0
O J:THR30 4.0 451.5 1.0
CA J:PRO33 4.2 341.4 1.0
OD1 J:ASP52 4.4 250.9 1.0
C J:PRO33 4.5 341.4 1.0
N J:PRO33 4.5 341.4 1.0
O J:PRO33 4.5 341.4 1.0
CB J:ASN153 4.6 554.6 1.0
C4' J:ADP601 4.7 267.6 1.0
O3A J:ADP601 4.8 267.6 1.0
N J:GLY32 4.8 345.6 1.0
O J:HOH702 4.9 246.8 1.0
CA J:GLY32 5.0 345.6 1.0
O J:HOH703 5.0 316.6 1.0

Reference:

J.Wagner, A.I.Caravajal, F.Beck, A.Bracher, W.Wan, S.Bohn, R.Koerner, W.Baumeister, R.Fernandez-Busnadiego, F.U.Hartl. Visualizing Chaperonin Function in Situ By Cryo-Electron Tomography Nature 2024.
ISSN: ESSN 1476-4687
Page generated: Tue Aug 13 00:22:38 2024

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