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Potassium in PDB 8jc7: Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin

Other elements in 8jc7:

The structure of Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin also contains other interesting chemical elements:

Calcium (Ca) 7 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin (pdb code 8jc7). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 7 binding sites of Potassium where determined in the Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin, PDB code: 8jc7:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7;

Potassium binding site 1 out of 7 in 8jc7

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Potassium binding site 1 out of 7 in the Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K801

b:94.1
occ:1.00
 CD2 A:TRP314 3.4 75.0 1.0
CE2 A:TRP314 3.4 75.0 1.0
CD A:ARG279 3.6 74.0 1.0
CE3 A:TRP314 3.7 75.0 1.0
NE A:ARG279 3.8 74.0 1.0
CZ2 A:TRP314 3.8 75.0 1.0
CG A:TRP314 3.8 75.0 1.0
NE1 A:TRP314 3.9 75.0 1.0
CZ3 A:TRP314 4.0 75.0 1.0
NH1 G:ARG279 4.0 74.6 1.0
CH2 A:TRP314 4.0 75.0 1.0
CD1 A:TRP314 4.1 75.0 1.0
CZ A:ARG279 4.2 74.0 1.0
CZ3 B:TRP314 4.4 74.6 1.0
NH1 A:ARG279 4.4 74.0 1.0
CB A:TRP314 4.6 75.0 1.0
CD G:ARG279 4.7 74.6 1.0
CH2 B:TRP314 4.8 74.6 1.0
CG A:ARG279 4.8 74.0 1.0
NH2 A:ARG279 4.9 74.0 1.0

Potassium binding site 2 out of 7 in 8jc7

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Potassium binding site 2 out of 7 in the Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K801

b:94.4
occ:1.00
 CD2 B:TRP314 3.4 74.6 1.0
CE2 B:TRP314 3.4 74.6 1.0
CD B:ARG279 3.6 73.7 1.0
CE3 B:TRP314 3.7 74.6 1.0
NE B:ARG279 3.7 73.7 1.0
CZ2 B:TRP314 3.8 74.6 1.0
CG B:TRP314 3.8 74.6 1.0
NE1 B:TRP314 3.9 74.6 1.0
NH1 A:ARG279 4.0 74.0 1.0
CZ3 B:TRP314 4.0 74.6 1.0
CH2 B:TRP314 4.0 74.6 1.0
CD1 B:TRP314 4.1 74.6 1.0
CZ B:ARG279 4.2 73.7 1.0
CZ3 C:TRP314 4.4 74.8 1.0
NH1 B:ARG279 4.4 73.7 1.0
CB B:TRP314 4.6 74.6 1.0
CD A:ARG279 4.7 74.0 1.0
CG B:ARG279 4.8 73.7 1.0
CH2 C:TRP314 4.8 74.8 1.0
NH2 B:ARG279 4.9 73.7 1.0

Potassium binding site 3 out of 7 in 8jc7

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Potassium binding site 3 out of 7 in the Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K801

b:94.8
occ:1.00
 CD2 C:TRP314 3.4 74.8 1.0
CE2 C:TRP314 3.4 74.8 1.0
CD C:ARG279 3.5 74.5 1.0
CE3 C:TRP314 3.7 74.8 1.0
NE C:ARG279 3.7 74.5 1.0
CZ2 C:TRP314 3.8 74.8 1.0
CG C:TRP314 3.8 74.8 1.0
NE1 C:TRP314 3.9 74.8 1.0
CZ3 C:TRP314 4.0 74.8 1.0
NH1 B:ARG279 4.0 73.7 1.0
CH2 C:TRP314 4.0 74.8 1.0
CD1 C:TRP314 4.1 74.8 1.0
CZ C:ARG279 4.2 74.5 1.0
CZ3 D:TRP314 4.3 75.7 1.0
NH1 C:ARG279 4.4 74.5 1.0
CB C:TRP314 4.5 74.8 1.0
CG C:ARG279 4.7 74.5 1.0
CD B:ARG279 4.8 73.7 1.0
CH2 D:TRP314 4.8 75.7 1.0
NH2 C:ARG279 4.9 74.5 1.0

Potassium binding site 4 out of 7 in 8jc7

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Potassium binding site 4 out of 7 in the Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K801

b:94.0
occ:1.00
 CD2 D:TRP314 3.4 75.7 1.0
CE2 D:TRP314 3.4 75.7 1.0
CD D:ARG279 3.6 75.2 1.0
CE3 D:TRP314 3.7 75.7 1.0
NE D:ARG279 3.7 75.2 1.0
CZ2 D:TRP314 3.8 75.7 1.0
CG D:TRP314 3.8 75.7 1.0
NE1 D:TRP314 3.9 75.7 1.0
NH1 C:ARG279 4.0 74.5 1.0
CZ3 D:TRP314 4.0 75.7 1.0
CH2 D:TRP314 4.0 75.7 1.0
CD1 D:TRP314 4.1 75.7 1.0
CZ D:ARG279 4.2 75.2 1.0
CZ3 E:TRP314 4.4 75.6 1.0
NH1 D:ARG279 4.4 75.2 1.0
CB D:TRP314 4.6 75.7 1.0
CD C:ARG279 4.7 74.5 1.0
CG D:ARG279 4.8 75.2 1.0
CH2 E:TRP314 4.8 75.6 1.0
NH2 D:ARG279 4.9 75.2 1.0

Potassium binding site 5 out of 7 in 8jc7

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Potassium binding site 5 out of 7 in the Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K801

b:94.5
occ:1.00
 CD2 E:TRP314 3.4 75.6 1.0
CE2 E:TRP314 3.4 75.6 1.0
CD E:ARG279 3.6 74.7 1.0
CE3 E:TRP314 3.7 75.6 1.0
NE E:ARG279 3.8 74.7 1.0
CZ2 E:TRP314 3.8 75.6 1.0
CG E:TRP314 3.8 75.6 1.0
NE1 E:TRP314 3.9 75.6 1.0
CZ3 E:TRP314 4.0 75.6 1.0
NH1 D:ARG279 4.0 75.2 1.0
CH2 E:TRP314 4.0 75.6 1.0
CD1 E:TRP314 4.1 75.6 1.0
CZ E:ARG279 4.2 74.7 1.0
CZ3 F:TRP314 4.4 75.3 1.0
NH1 E:ARG279 4.4 74.7 1.0
CB E:TRP314 4.6 75.6 1.0
CD D:ARG279 4.7 75.2 1.0
CH2 F:TRP314 4.8 75.3 1.0
CG E:ARG279 4.8 74.7 1.0
NH2 E:ARG279 4.9 74.7 1.0

Potassium binding site 6 out of 7 in 8jc7

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Potassium binding site 6 out of 7 in the Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K801

b:96.8
occ:1.00
 CD2 F:TRP314 3.4 75.3 1.0
CE2 F:TRP314 3.4 75.3 1.0
CD F:ARG279 3.6 74.8 1.0
CE3 F:TRP314 3.7 75.3 1.0
NE F:ARG279 3.8 74.8 1.0
CZ2 F:TRP314 3.8 75.3 1.0
CG F:TRP314 3.8 75.3 1.0
NE1 F:TRP314 3.9 75.3 1.0
NH1 E:ARG279 4.0 74.7 1.0
CZ3 F:TRP314 4.0 75.3 1.0
CH2 F:TRP314 4.0 75.3 1.0
CD1 F:TRP314 4.1 75.3 1.0
CZ F:ARG279 4.2 74.8 1.0
CZ3 G:TRP314 4.3 76.1 1.0
NH1 F:ARG279 4.4 74.8 1.0
CB F:TRP314 4.6 75.3 1.0
CD E:ARG279 4.8 74.7 1.0
CH2 G:TRP314 4.8 76.1 1.0
CG F:ARG279 4.8 74.8 1.0
NH2 F:ARG279 4.9 74.8 1.0

Potassium binding site 7 out of 7 in 8jc7

Go back to Potassium Binding Sites List in 8jc7
Potassium binding site 7 out of 7 in the Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
G:K801

b:94.8
occ:1.00
 CD2 G:TRP314 3.4 76.1 1.0
CE2 G:TRP314 3.4 76.1 1.0
CD G:ARG279 3.6 74.6 1.0
CE3 G:TRP314 3.6 76.1 1.0
NE G:ARG279 3.8 74.6 1.0
CZ2 G:TRP314 3.8 76.1 1.0
CG G:TRP314 3.8 76.1 1.0
NE1 G:TRP314 3.9 76.1 1.0
CZ3 G:TRP314 4.0 76.1 1.0
NH1 F:ARG279 4.0 74.8 1.0
CH2 G:TRP314 4.0 76.1 1.0
CD1 G:TRP314 4.1 76.1 1.0
CZ G:ARG279 4.2 74.6 1.0
CZ3 A:TRP314 4.4 75.0 1.0
NH1 G:ARG279 4.5 74.6 1.0
CB G:TRP314 4.6 76.1 1.0
CD F:ARG279 4.7 74.8 1.0
CG G:ARG279 4.8 74.6 1.0
CH2 A:TRP314 4.8 75.0 1.0
NH2 G:ARG279 4.9 74.6 1.0

Reference:

Y.C.Chiu, M.K.Yeh, C.H.Wang, Y.A.Chen, H.Chang, C.H.Yu, H.Y.Lin, M.C.Ho, S.M.Lin. Structural Basis For Calcium-Stimulating Pore Formation of Vibrio Alpha-Hemolysin To Be Published.
Page generated: Tue Aug 13 00:05:12 2024

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