Atomistry » Potassium » PDB 8fz7-8oyy » 8jc7
Atomistry »
  Potassium »
    PDB 8fz7-8oyy »
      8jc7 »

Potassium in PDB 8jc7: Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin

Other elements in 8jc7:

The structure of Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin also contains other interesting chemical elements:

Calcium (Ca) 7 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin (pdb code 8jc7). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 7 binding sites of Potassium where determined in the Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin, PDB code: 8jc7:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7;

Potassium binding site 1 out of 7 in 8jc7

Go back to Potassium Binding Sites List in 8jc7
Potassium binding site 1 out of 7 in the Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K801

b:94.1
occ:1.00
 CD2 A:TRP314 3.4 75.0 1.0
CE2 A:TRP314 3.4 75.0 1.0
CD A:ARG279 3.6 74.0 1.0
CE3 A:TRP314 3.7 75.0 1.0
NE A:ARG279 3.8 74.0 1.0
CZ2 A:TRP314 3.8 75.0 1.0
CG A:TRP314 3.8 75.0 1.0
NE1 A:TRP314 3.9 75.0 1.0
CZ3 A:TRP314 4.0 75.0 1.0
NH1 G:ARG279 4.0 74.6 1.0
CH2 A:TRP314 4.0 75.0 1.0
CD1 A:TRP314 4.1 75.0 1.0
CZ A:ARG279 4.2 74.0 1.0
CZ3 B:TRP314 4.4 74.6 1.0
NH1 A:ARG279 4.4 74.0 1.0
CB A:TRP314 4.6 75.0 1.0
CD G:ARG279 4.7 74.6 1.0
CH2 B:TRP314 4.8 74.6 1.0
CG A:ARG279 4.8 74.0 1.0
NH2 A:ARG279 4.9 74.0 1.0

Potassium binding site 2 out of 7 in 8jc7

Go back to Potassium Binding Sites List in 8jc7
Potassium binding site 2 out of 7 in the Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K801

b:94.4
occ:1.00
 CD2 B:TRP314 3.4 74.6 1.0
CE2 B:TRP314 3.4 74.6 1.0
CD B:ARG279 3.6 73.7 1.0
CE3 B:TRP314 3.7 74.6 1.0
NE B:ARG279 3.7 73.7 1.0
CZ2 B:TRP314 3.8 74.6 1.0
CG B:TRP314 3.8 74.6 1.0
NE1 B:TRP314 3.9 74.6 1.0
NH1 A:ARG279 4.0 74.0 1.0
CZ3 B:TRP314 4.0 74.6 1.0
CH2 B:TRP314 4.0 74.6 1.0
CD1 B:TRP314 4.1 74.6 1.0
CZ B:ARG279 4.2 73.7 1.0
CZ3 C:TRP314 4.4 74.8 1.0
NH1 B:ARG279 4.4 73.7 1.0
CB B:TRP314 4.6 74.6 1.0
CD A:ARG279 4.7 74.0 1.0
CG B:ARG279 4.8 73.7 1.0
CH2 C:TRP314 4.8 74.8 1.0
NH2 B:ARG279 4.9 73.7 1.0

Potassium binding site 3 out of 7 in 8jc7

Go back to Potassium Binding Sites List in 8jc7
Potassium binding site 3 out of 7 in the Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K801

b:94.8
occ:1.00
 CD2 C:TRP314 3.4 74.8 1.0
CE2 C:TRP314 3.4 74.8 1.0
CD C:ARG279 3.5 74.5 1.0
CE3 C:TRP314 3.7 74.8 1.0
NE C:ARG279 3.7 74.5 1.0
CZ2 C:TRP314 3.8 74.8 1.0
CG C:TRP314 3.8 74.8 1.0
NE1 C:TRP314 3.9 74.8 1.0
CZ3 C:TRP314 4.0 74.8 1.0
NH1 B:ARG279 4.0 73.7 1.0
CH2 C:TRP314 4.0 74.8 1.0
CD1 C:TRP314 4.1 74.8 1.0
CZ C:ARG279 4.2 74.5 1.0
CZ3 D:TRP314 4.3 75.7 1.0
NH1 C:ARG279 4.4 74.5 1.0
CB C:TRP314 4.5 74.8 1.0
CG C:ARG279 4.7 74.5 1.0
CD B:ARG279 4.8 73.7 1.0
CH2 D:TRP314 4.8 75.7 1.0
NH2 C:ARG279 4.9 74.5 1.0

Potassium binding site 4 out of 7 in 8jc7

Go back to Potassium Binding Sites List in 8jc7
Potassium binding site 4 out of 7 in the Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K801

b:94.0
occ:1.00
 CD2 D:TRP314 3.4 75.7 1.0
CE2 D:TRP314 3.4 75.7 1.0
CD D:ARG279 3.6 75.2 1.0
CE3 D:TRP314 3.7 75.7 1.0
NE D:ARG279 3.7 75.2 1.0
CZ2 D:TRP314 3.8 75.7 1.0
CG D:TRP314 3.8 75.7 1.0
NE1 D:TRP314 3.9 75.7 1.0
NH1 C:ARG279 4.0 74.5 1.0
CZ3 D:TRP314 4.0 75.7 1.0
CH2 D:TRP314 4.0 75.7 1.0
CD1 D:TRP314 4.1 75.7 1.0
CZ D:ARG279 4.2 75.2 1.0
CZ3 E:TRP314 4.4 75.6 1.0
NH1 D:ARG279 4.4 75.2 1.0
CB D:TRP314 4.6 75.7 1.0
CD C:ARG279 4.7 74.5 1.0
CG D:ARG279 4.8 75.2 1.0
CH2 E:TRP314 4.8 75.6 1.0
NH2 D:ARG279 4.9 75.2 1.0

Potassium binding site 5 out of 7 in 8jc7

Go back to Potassium Binding Sites List in 8jc7
Potassium binding site 5 out of 7 in the Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K801

b:94.5
occ:1.00
 CD2 E:TRP314 3.4 75.6 1.0
CE2 E:TRP314 3.4 75.6 1.0
CD E:ARG279 3.6 74.7 1.0
CE3 E:TRP314 3.7 75.6 1.0
NE E:ARG279 3.8 74.7 1.0
CZ2 E:TRP314 3.8 75.6 1.0
CG E:TRP314 3.8 75.6 1.0
NE1 E:TRP314 3.9 75.6 1.0
CZ3 E:TRP314 4.0 75.6 1.0
NH1 D:ARG279 4.0 75.2 1.0
CH2 E:TRP314 4.0 75.6 1.0
CD1 E:TRP314 4.1 75.6 1.0
CZ E:ARG279 4.2 74.7 1.0
CZ3 F:TRP314 4.4 75.3 1.0
NH1 E:ARG279 4.4 74.7 1.0
CB E:TRP314 4.6 75.6 1.0
CD D:ARG279 4.7 75.2 1.0
CH2 F:TRP314 4.8 75.3 1.0
CG E:ARG279 4.8 74.7 1.0
NH2 E:ARG279 4.9 74.7 1.0

Potassium binding site 6 out of 7 in 8jc7

Go back to Potassium Binding Sites List in 8jc7
Potassium binding site 6 out of 7 in the Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K801

b:96.8
occ:1.00
 CD2 F:TRP314 3.4 75.3 1.0
CE2 F:TRP314 3.4 75.3 1.0
CD F:ARG279 3.6 74.8 1.0
CE3 F:TRP314 3.7 75.3 1.0
NE F:ARG279 3.8 74.8 1.0
CZ2 F:TRP314 3.8 75.3 1.0
CG F:TRP314 3.8 75.3 1.0
NE1 F:TRP314 3.9 75.3 1.0
NH1 E:ARG279 4.0 74.7 1.0
CZ3 F:TRP314 4.0 75.3 1.0
CH2 F:TRP314 4.0 75.3 1.0
CD1 F:TRP314 4.1 75.3 1.0
CZ F:ARG279 4.2 74.8 1.0
CZ3 G:TRP314 4.3 76.1 1.0
NH1 F:ARG279 4.4 74.8 1.0
CB F:TRP314 4.6 75.3 1.0
CD E:ARG279 4.8 74.7 1.0
CH2 G:TRP314 4.8 76.1 1.0
CG F:ARG279 4.8 74.8 1.0
NH2 F:ARG279 4.9 74.8 1.0

Potassium binding site 7 out of 7 in 8jc7

Go back to Potassium Binding Sites List in 8jc7
Potassium binding site 7 out of 7 in the Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Cryo-Em Structure of Vibrio Campbellii Alpha-Hemolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
G:K801

b:94.8
occ:1.00
 CD2 G:TRP314 3.4 76.1 1.0
CE2 G:TRP314 3.4 76.1 1.0
CD G:ARG279 3.6 74.6 1.0
CE3 G:TRP314 3.6 76.1 1.0
NE G:ARG279 3.8 74.6 1.0
CZ2 G:TRP314 3.8 76.1 1.0
CG G:TRP314 3.8 76.1 1.0
NE1 G:TRP314 3.9 76.1 1.0
CZ3 G:TRP314 4.0 76.1 1.0
NH1 F:ARG279 4.0 74.8 1.0
CH2 G:TRP314 4.0 76.1 1.0
CD1 G:TRP314 4.1 76.1 1.0
CZ G:ARG279 4.2 74.6 1.0
CZ3 A:TRP314 4.4 75.0 1.0
NH1 G:ARG279 4.5 74.6 1.0
CB G:TRP314 4.6 76.1 1.0
CD F:ARG279 4.7 74.8 1.0
CG G:ARG279 4.8 74.6 1.0
CH2 A:TRP314 4.8 75.0 1.0
NH2 G:ARG279 4.9 74.6 1.0

Reference:

Y.C.Chiu, M.K.Yeh, C.H.Wang, Y.A.Chen, H.Chang, C.H.Yu, H.Y.Lin, M.C.Ho, S.M.Lin. Structural Basis For Calcium-Stimulating Pore Formation of Vibrio Alpha-Hemolysin To Be Published.
Page generated: Thu Dec 28 07:06:44 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy