Potassium in PDB 8gpd: Crystal Structure of Ndm-1 at PH5.5 (Succinate) in Complex with Hydrolyzed Penicillin V

The structure of Crystal Structure of Ndm-1 at PH5.5 (Succinate) in Complex with Hydrolyzed Penicillin V, PDB code: 8gpd was solved by X.Shi, Y.Dai, Q.Zhang, W.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.08 / 1.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	39.14, 79.05, 134.28, 90, 90, 90
R / Rfree (%)	12.4 / 16

The structure of Crystal Structure of Ndm-1 at PH5.5 (Succinate) in Complex with Hydrolyzed Penicillin V also contains other interesting chemical elements:

Zinc

(Zn)

4 atoms

The binding sites of Potassium atom in the Crystal Structure of Ndm-1 at PH5.5 (Succinate) in Complex with Hydrolyzed Penicillin V (pdb code 8gpd). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of Ndm-1 at PH5.5 (Succinate) in Complex with Hydrolyzed Penicillin V, PDB code: 8gpd:

Potassium binding site 1 out of 1 in the Crystal Structure of Ndm-1 at PH5.5 (Succinate) in Complex with Hydrolyzed Penicillin V


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Ndm-1 at PH5.5 (Succinate) in Complex with Hydrolyzed Penicillin V within 5.0Å range: probe atom residue distance (Å) B Occ B:K304 b:10.2 occ:1.00 OD2 B:ASP223 2.1 13.6 1.0 OE2 B:GLU152 2.2 15.5 1.0 OE1 B:GLU152 2.7 14.0 1.0 CD B:GLU152 2.7 12.9 1.0 CG B:ASP223 2.8 15.0 1.0 OD1 B:ASP223 2.9 14.9 1.0 O B:HOH555 4.0 12.1 1.0 NE2 B:HIS122 4.1 12.0 1.0 CG B:GLU152 4.2 10.7 1.0 CB B:ASP223 4.3 12.3 1.0 O B:HOH539 4.6 28.7 1.0 CD2 B:HIS122 4.8 10.2 1.0 O B:HOH451 4.9 18.2 1.0

X.Shi, Y.Dai, Q.Zhang, W.Liu. Crystal Structure of Ndm-1 at PH5.5 (Succinate) in Complex with Hydrolyzed Penicillin V To Be Published.