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Potassium in PDB 8fkg: Crystal Structure of Ppargamma Ligand-Binding Domain in Complex with N-Cor Peptide and Inverse Agonist SR33486

Protein crystallography data

The structure of Crystal Structure of Ppargamma Ligand-Binding Domain in Complex with N-Cor Peptide and Inverse Agonist SR33486, PDB code: 8fkg was solved by B.S.Mactavish, D.J.Kojetin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.98 / 2.12
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 61.968, 61.968, 163.608, 90, 90, 90
R / Rfree (%) 18.5 / 21.8

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Ppargamma Ligand-Binding Domain in Complex with N-Cor Peptide and Inverse Agonist SR33486 (pdb code 8fkg). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of Ppargamma Ligand-Binding Domain in Complex with N-Cor Peptide and Inverse Agonist SR33486, PDB code: 8fkg:

Potassium binding site 1 out of 1 in 8fkg

Go back to Potassium Binding Sites List in 8fkg
Potassium binding site 1 out of 1 in the Crystal Structure of Ppargamma Ligand-Binding Domain in Complex with N-Cor Peptide and Inverse Agonist SR33486


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Ppargamma Ligand-Binding Domain in Complex with N-Cor Peptide and Inverse Agonist SR33486 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K513

b:82.1
occ:1.00
NZ A:LYS336 2.7 52.5 1.0
O3 A:SO4504 3.0 73.2 1.0
CE A:LYS336 3.5 44.3 1.0
OD2 A:ASP337 3.5 36.1 1.0
CG A:LYS336 4.0 40.8 1.0
S A:SO4504 4.3 82.2 1.0
CG A:ASP337 4.3 36.5 1.0
O1 A:EDO507 4.4 34.7 1.0
CD A:LYS336 4.4 44.3 1.0
O A:HOH604 4.4 49.8 1.0
O4 A:SO4504 4.4 47.3 1.0
ND2 A:ASN335 4.5 28.7 1.0
O A:HOH668 4.6 43.0 1.0
OD1 A:ASP337 4.6 35.9 1.0
CG A:ASN335 4.9 29.9 1.0

Reference:

B.S.Mactavish, D.J.Kojetin. Crystal Structure of Ppargamma Ligand-Binding Domain in Complex with N-Cor Peptide and SR33486 To Be Published.
Page generated: Mon Aug 12 23:43:01 2024

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