Potassium in PDB 8fi8: Structure of Lettuce C20T Bound to Dfame

Protein crystallography data

The structure of Structure of Lettuce C20T Bound to Dfame, PDB code: 8fi8 was solved by L.F.M.Passalacqua, A.R.Ferre-D'amare, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.28 / 2.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 25.023, 43.953, 120.102, 90, 90, 90
R / Rfree (%) 21.7 / 28.3

Other elements in 8fi8:

The structure of Structure of Lettuce C20T Bound to Dfame also contains other interesting chemical elements:

Fluorine (F) 2 atoms
Magnesium (Mg) 3 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Structure of Lettuce C20T Bound to Dfame (pdb code 8fi8). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Structure of Lettuce C20T Bound to Dfame, PDB code: 8fi8:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 8fi8

Go back to Potassium Binding Sites List in 8fi8
Potassium binding site 1 out of 2 in the Structure of Lettuce C20T Bound to Dfame


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Structure of Lettuce C20T Bound to Dfame within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K101

b:30.5
occ:1.00
O6 A:DG24 2.6 27.8 1.0
O6 A:DG9 2.7 27.4 1.0
O6 A:DG45 2.8 33.7 1.0
O6 A:DG10 2.8 28.6 1.0
O6 A:DG19 2.8 27.5 1.0
O6 A:DG46 2.9 27.6 1.0
O6 A:DG18 2.9 30.6 1.0
O6 A:DG25 3.0 29.1 1.0
N2 A:DG8 3.2 29.6 1.0
C6 A:DG24 3.4 28.0 1.0
C6 A:DG9 3.5 27.4 1.0
C6 A:DG45 3.6 29.2 1.0
K A:K102 3.6 35.9 1.0
C6 A:DG46 3.7 27.6 1.0
N1 A:DG24 3.7 28.0 1.0
C6 A:DG10 3.7 28.7 1.0
N1 A:DG46 3.7 27.6 1.0
C6 A:DG18 3.8 30.8 1.0
C6 A:DG19 3.8 27.5 1.0
N1 A:DG9 3.8 27.4 1.0
N1 A:DG10 3.9 28.7 1.0
N1 A:DG19 3.9 27.6 1.0
N1 A:DG45 3.9 29.3 1.0
C2 A:DG8 3.9 27.1 1.0
C6 A:DG25 4.0 29.3 1.0
N1 A:DG18 4.1 30.4 1.0
N1 A:DG25 4.4 29.3 1.0
N1 A:DG8 4.5 26.6 1.0
N3 A:DG8 4.6 26.4 1.0
C5 A:DG45 4.7 30.6 1.0
C5 A:DG24 4.7 28.3 1.0
C5 A:DG9 4.7 27.4 1.0
C5 A:DG18 4.9 29.0 1.0
C2 A:DG24 4.9 28.3 1.0
C5 A:DG46 5.0 28.1 1.0
C5 A:DG10 5.0 28.8 1.0

Potassium binding site 2 out of 2 in 8fi8

Go back to Potassium Binding Sites List in 8fi8
Potassium binding site 2 out of 2 in the Structure of Lettuce C20T Bound to Dfame


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Structure of Lettuce C20T Bound to Dfame within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K102

b:35.9
occ:1.00
O16 A:X5R106 2.5 31.7 1.0
O6 A:DG25 2.6 29.1 1.0
O6 A:DG45 2.7 33.7 1.0
O6 A:DG18 2.8 30.6 1.0
N1 A:DA11 2.9 30.2 1.0
O6 A:DG10 3.1 28.6 1.0
F18 A:X5R106 3.4 31.9 1.0
C6 A:DG25 3.4 29.3 1.0
C6 A:DG45 3.4 29.2 1.0
C15 A:X5R106 3.5 31.7 1.0
N1 A:DG45 3.6 29.3 1.0
K A:K101 3.6 30.5 1.0
C2 A:DA11 3.7 37.1 1.0
C6 A:DG18 3.8 30.8 1.0
C6 A:DA11 3.8 30.3 1.0
N6 A:DA11 3.8 33.1 1.0
C6 A:DG10 3.8 28.7 1.0
C17 A:X5R106 3.9 31.8 1.0
N1 A:DG25 3.9 29.3 1.0
N1 A:DG18 4.1 30.4 1.0
N1 A:DG10 4.1 28.7 1.0
C5 A:DG25 4.4 29.7 1.0
C13 A:X5R106 4.6 31.7 1.0
C5 A:DG45 4.7 30.6 1.0
C2 A:DG45 4.8 29.5 1.0
N2 A:DG44 4.9 34.6 1.0
F14 A:X5R106 4.9 33.2 1.0
C5 A:DG10 4.9 28.8 1.0
N7 A:DG25 5.0 30.5 1.0
N3 A:DA11 5.0 35.8 1.0
C5 A:DG18 5.0 29.0 1.0

Reference:

L.F.M.Passalacqua, A.R.Ferre-D'amare. Structure of Lettuce C20T Bound to Dfame To Be Published.
Page generated: Mon Aug 12 23:42:43 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy