Potassium in PDB 8f11: T4 Lysozyme with A 2,6-Diazaadamantane Nitroxide (Dzd) Spin Label

All present enzymatic activity of T4 Lysozyme with A 2,6-Diazaadamantane Nitroxide (Dzd) Spin Label:
3.2.1.17;

The structure of T4 Lysozyme with A 2,6-Diazaadamantane Nitroxide (Dzd) Spin Label, PDB code: 8f11 was solved by M.A.Wilson, P.Madzelan, A.Rajca, R.Stein, Z.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.20 / 1.12
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	60.046, 60.046, 95.624, 90, 90, 120
R / Rfree (%)	13.5 / 15.9

The structure of T4 Lysozyme with A 2,6-Diazaadamantane Nitroxide (Dzd) Spin Label also contains other interesting chemical elements:

Chlorine

(Cl)

3 atoms

The binding sites of Potassium atom in the T4 Lysozyme with A 2,6-Diazaadamantane Nitroxide (Dzd) Spin Label (pdb code 8f11). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the T4 Lysozyme with A 2,6-Diazaadamantane Nitroxide (Dzd) Spin Label, PDB code: 8f11:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in the T4 Lysozyme with A 2,6-Diazaadamantane Nitroxide (Dzd) Spin Label


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of T4 Lysozyme with A 2,6-Diazaadamantane Nitroxide (Dzd) Spin Label within 5.0Å range: probe atom residue distance (Å) B Occ A:K204 b:18.9 occ:0.59 O A:HOH376 2.1 28.4 0.8 O A:HOH415 2.9 20.7 1.0 O A:HOH362 2.9 32.3 1.0 O A:HOH524 2.9 33.5 1.0 O A:GLU11 3.0 14.5 1.0 OH A:TYR18 3.0 25.5 1.0 OE1 A:GLU11 3.1 16.1 1.0 O A:HOH478 3.3 36.1 1.0 HA A:GLU11 3.3 15.4 1.0 HE2 A:TYR18 3.4 25.4 1.0 O A:HOH426 3.4 28.9 1.0 O A:HOH495 3.5 40.6 1.0 HH A:TYR18 3.6 30.6 1.0 HA2 A:GLY30 3.8 16.1 1.0 O A:HOH301 3.8 19.2 0.7 HB3 A:GLU11 3.8 16.4 1.0 C A:GLU11 3.8 13.9 1.0 CA A:GLU11 3.9 12.8 1.0 CZ A:TYR18 3.9 20.2 1.0 CE2 A:TYR18 4.0 21.2 1.0 CD A:GLU11 4.3 15.6 1.0 HG21 A:THR26 4.3 16.0 1.0 O A:HOH407 4.3 14.5 0.4 CB A:GLU11 4.3 13.7 1.0 HB2 A:ASP20 4.3 18.3 1.0 H A:GLY30 4.4 15.2 1.0 HA3 A:GLY30 4.4 16.1 1.0 CA A:GLY30 4.5 13.4 1.0 HA A:ASP20 4.6 17.8 1.0 N A:GLY30 4.8 12.7 1.0 HG23 A:THR21 4.8 20.5 0.5 O A:HOH588 4.8 32.2 1.0 CG A:GLU11 4.9 14.8 1.0 O A:ASP10 4.9 16.0 1.0 HB3 A:ASP20 4.9 18.3 1.0

Potassium binding site 2 out of 2 in the T4 Lysozyme with A 2,6-Diazaadamantane Nitroxide (Dzd) Spin Label


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of T4 Lysozyme with A 2,6-Diazaadamantane Nitroxide (Dzd) Spin Label within 5.0Å range: probe atom residue distance (Å) B Occ A:K205 b:25.9 occ:0.41 OE1 A:GLU128 1.6 18.4 0.5 O A:HOH428 1.7 25.2 0.7 H A:ASP127 2.4 18.1 1.0 O A:HOH432 2.6 21.7 0.7 CD A:GLU128 2.6 18.9 0.5 HB2 A:ASP127 2.7 20.8 1.0 H A:GLU128 2.7 18.1 0.5 H A:GLU128 2.7 17.9 0.5 HG3 A:GLU128 3.0 26.0 0.5 OE2 A:GLU128 3.1 21.6 0.5 N A:ASP127 3.1 15.1 1.0 HA A:ARG125 3.2 17.6 1.0 H A:TRP126 3.3 16.9 1.0 N A:TRP126 3.4 14.1 1.0 C A:ARG125 3.4 14.1 1.0 N A:GLU128 3.5 15.1 0.5 N A:GLU128 3.5 14.9 0.5 CB A:ASP127 3.5 17.3 1.0 HB3 A:ARG125 3.5 18.8 1.0 CA A:ARG125 3.7 14.7 1.0 CA A:ASP127 3.7 15.3 1.0 O A:ARG125 4.0 14.5 1.0 CG A:GLU128 4.0 19.0 0.5 CG A:GLU128 4.0 21.7 0.5 HB2 A:GLU128 4.0 17.4 0.5 C A:TRP126 4.0 14.6 1.0 C A:ASP127 4.1 14.5 1.0 CB A:ARG125 4.1 15.6 1.0 OE2 A:GLU128 4.2 25.6 0.5 HB2 A:GLU128 4.2 21.2 0.5 HB3 A:ASP127 4.2 20.8 1.0 O A:HOH479 4.2 36.3 0.9 CA A:TRP126 4.3 14.2 1.0 HG3 A:GLU128 4.3 22.8 0.5 CG A:ASP127 4.4 17.0 1.0 CB A:GLU128 4.4 14.5 0.5 CB A:GLU128 4.5 17.7 0.5 HB2 A:TRP126 4.5 17.7 1.0 CD A:GLU128 4.5 23.4 0.5 CA A:GLU128 4.6 14.7 0.5 HG2 A:ARG125 4.6 19.9 1.0 HG2 A:GLU128 4.6 26.0 0.5 CA A:GLU128 4.6 16.2 0.5 HG2 A:GLU128 4.6 22.8 0.5 HA A:ASP127 4.6 18.3 1.0 OD1 A:ASP127 4.7 22.2 1.0 O A:HOH476 4.7 20.8 1.0 HB2 A:ARG125 4.9 18.8 1.0 CB A:TRP126 5.0 14.8 1.0 H A:ALA129 5.0 16.4 0.5 CG A:ARG125 5.0 16.6 1.0 H A:ALA129 5.0 16.4 0.5

Z.Yang, R.Stein, M.Pink, P.Madzelan, T.Ngendahimana, S.Rajca, M.A.Wilson, S.S.Eaton, G.R.Eaton, H.S.Mchaourab, A.Rajca. Supramolecular Complexation with Cucurbit[7]Uril in Electron Paramagnetic Resonance Distance Measurements of Spin-Labeled Protein To Be Published.