Potassium in PDB 8f0n: Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho

The structure of Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho, PDB code: 8f0n was solved by L.F.M.Passalacqua, A.R.Ferre-D'amare, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.06 / 2.85
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	30.012, 50.353, 94.584, 90, 95.7, 90
R / Rfree (%)	19.4 / 25.6

The structure of Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho also contains other interesting chemical elements:

Fluorine

(F)

4 atoms

The binding sites of Potassium atom in the Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho (pdb code 8f0n). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 5 binding sites of Potassium where determined in the Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho, PDB code: 8f0n:
Jump to Potassium binding site number: 1; 2; 3; 4; 5;

Potassium binding site 1 out of 5 in the Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho within 5.0Å range: probe atom residue distance (Å) B Occ B:K101 b:15.0 occ:1.00 O6 B:G25 2.6 15.9 1.0 O6 B:G24 2.8 14.6 1.0 O6 B:G21 2.8 17.2 1.0 O6 B:G33 2.9 16.4 1.0 O6 B:G32 2.9 16.8 1.0 O6 B:G30 2.9 16.6 1.0 O6 B:G20 3.1 14.6 1.0 O6 B:G29 3.1 15.9 1.0 K B:K102 3.4 17.5 1.0 C6 B:G21 3.5 16.4 1.0 C6 B:G25 3.6 16.4 1.0 C6 B:G24 3.6 14.9 1.0 C6 B:G33 3.6 16.5 1.0 C6 B:G20 3.6 14.6 1.0 N1 B:G20 3.8 14.9 1.0 C6 B:G32 3.8 15.8 1.0 N1 B:G21 3.8 16.1 1.0 N1 B:G24 3.8 15.0 1.0 K A:K101 3.9 27.2 1.0 N1 B:G32 3.9 15.3 1.0 N1 B:G25 3.9 16.6 1.0 C6 B:G30 3.9 16.9 1.0 N1 B:G33 4.0 16.5 1.0 C6 B:G29 4.0 15.8 1.0 N1 B:G29 4.1 15.8 1.0 N1 B:G30 4.3 16.7 1.0 C5 B:G21 4.6 16.2 1.0 C5 B:G33 4.7 16.8 1.0 C5 B:G20 4.7 14.9 1.0 C5 B:G25 4.9 16.5 1.0 C2 B:G20 4.9 14.9 1.0 C5 B:G24 4.9 15.2 1.0 C2 B:G21 5.0 16.3 1.0

Potassium binding site 2 out of 5 in the Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho within 5.0Å range: probe atom residue distance (Å) B Occ B:K102 b:17.5 occ:1.00 O6 B:G21 2.6 17.2 1.0 O6 B:G27 2.6 18.9 1.0 O6 B:G33 2.7 16.4 1.0 O6 B:G35 2.7 18.9 1.0 O6 B:G18 2.8 19.3 1.0 O6 B:G22 2.8 19.0 1.0 O6 B:G25 2.8 15.9 1.0 O6 B:G30 3.0 16.6 1.0 N6 B:A37 3.4 21.3 1.0 K B:K101 3.4 15.0 1.0 C6 B:G22 3.5 19.1 1.0 C6 B:G27 3.5 19.4 1.0 N1 B:G22 3.5 19.1 1.0 C6 B:G21 3.5 16.4 1.0 C6 B:G25 3.6 16.4 1.0 C6 B:G35 3.6 19.7 1.0 C6 B:G33 3.6 16.5 1.0 C6 B:G18 3.7 19.4 1.0 N1 B:G27 3.8 19.7 1.0 N1 B:G35 3.8 19.6 1.0 N1 B:G25 3.8 16.6 1.0 C6 B:G30 3.9 16.9 1.0 N1 B:G21 3.9 16.1 1.0 N1 B:G33 4.0 16.5 1.0 N1 B:G18 4.0 19.3 1.0 N1 B:G30 4.2 16.7 1.0 C6 B:A37 4.3 22.6 1.0 C2 B:G22 4.7 19.4 1.0 C5 B:G25 4.7 16.5 1.0 C5 B:G22 4.8 19.3 1.0 C5 B:G27 4.8 19.8 1.0 C5 B:G21 4.8 16.2 1.0 N1 B:A37 4.8 23.1 1.0 C5 B:G33 4.9 16.8 1.0 C5 B:G18 4.9 19.9 1.0 C5 B:G35 5.0 20.8 1.0

Potassium binding site 3 out of 5 in the Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho within 5.0Å range: probe atom residue distance (Å) B Occ A:K101 b:27.2 occ:1.00 O6 A:G20 2.6 16.4 1.0 O6 A:G24 2.9 15.0 1.0 O6 A:G29 2.9 16.2 1.0 O6 A:G32 3.0 15.5 1.0 O6 B:G20 3.2 14.6 1.0 K A:K102 3.2 15.4 1.0 O6 B:G24 3.3 14.6 1.0 O6 B:G29 3.4 15.9 1.0 O6 B:G32 3.5 16.8 1.0 C6 A:G20 3.5 15.4 1.0 C6 A:G24 3.6 14.6 1.0 C6 A:G29 3.6 14.6 1.0 N1 A:G29 3.7 15.1 1.0 C6 A:G32 3.7 15.9 1.0 N1 A:G20 3.8 16.4 1.0 N1 A:G24 3.8 15.0 1.0 N1 B:G29 3.8 15.8 1.0 K B:K101 3.9 15.0 1.0 C6 B:G29 3.9 15.8 1.0 N1 A:G32 4.0 15.7 1.0 C6 B:G24 4.0 14.9 1.0 C6 B:G32 4.1 15.8 1.0 C6 B:G20 4.1 14.6 1.0 N1 B:G24 4.2 15.0 1.0 N1 B:G20 4.3 14.9 1.0 N1 B:G32 4.4 15.3 1.0 C5 A:G24 4.7 14.6 1.0 C5 A:G29 4.8 14.3 1.0 C2 A:G29 4.8 14.2 1.0 C5 A:G32 4.8 14.8 1.0 C5 A:G20 4.8 14.3 1.0 C2 B:G29 4.9 16.1 1.0 O6 A:G25 5.0 13.5 1.0 C2 A:G24 5.0 14.6 1.0 C5 B:G32 5.0 15.3 1.0

Potassium binding site 4 out of 5 in the Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho within 5.0Å range: probe atom residue distance (Å) B Occ A:K102 b:15.4 occ:1.00 O6 A:G33 2.5 13.4 1.0 O6 A:G21 2.6 13.6 1.0 O6 A:G32 2.7 15.5 1.0 O6 A:G20 2.7 16.4 1.0 O6 A:G25 2.8 13.5 1.0 O6 A:G24 2.8 15.0 1.0 O6 A:G30 3.0 13.3 1.0 O6 A:G29 3.2 16.2 1.0 K A:K101 3.2 27.2 1.0 C6 A:G33 3.2 14.5 1.0 C6 A:G21 3.4 14.3 1.0 K A:K103 3.4 13.2 1.0 C6 A:G20 3.4 15.4 1.0 N1 A:G33 3.4 15.0 1.0 C6 A:G32 3.6 15.9 1.0 N1 A:G20 3.8 16.4 1.0 C6 A:G25 3.8 13.9 1.0 N1 A:G21 3.8 15.3 1.0 N1 A:G32 3.8 15.7 1.0 C6 A:G24 3.9 14.6 1.0 C6 A:G29 4.0 14.6 1.0 C6 A:G30 4.0 13.5 1.0 N1 A:G29 4.1 15.1 1.0 N1 A:G25 4.2 13.8 1.0 N1 A:G24 4.3 15.0 1.0 N1 A:G30 4.3 13.6 1.0 C5 A:G21 4.4 14.6 1.0 C5 A:G20 4.5 14.3 1.0 C5 A:G33 4.5 15.1 1.0 C2 A:G33 4.7 15.3 1.0 N7 A:G21 4.9 14.8 1.0 C2 A:G20 5.0 15.3 1.0 C2 A:G21 5.0 14.4 1.0

Potassium binding site 5 out of 5 in the Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho within 5.0Å range: probe atom residue distance (Å) B Occ A:K103 b:13.2 occ:1.00 O6 A:G21 2.5 13.6 1.0 O6 A:G22 2.7 14.4 1.0 O6 A:G35 2.8 14.9 1.0 O6 A:G27 2.9 17.1 1.0 O6 A:G18 3.0 13.8 1.0 O6 A:G33 3.0 13.4 1.0 O6 A:G30 3.1 13.3 1.0 N6 A:A37 3.1 15.6 1.0 O6 A:G25 3.2 13.5 1.0 K A:K102 3.4 15.4 1.0 C6 A:G21 3.6 14.3 1.0 C6 A:G22 3.6 15.9 1.0 C6 A:G33 3.7 14.5 1.0 C6 A:G18 3.7 15.2 1.0 C6 A:G27 3.8 15.7 1.0 N1 A:G18 3.8 16.0 1.0 C6 A:G35 3.8 15.8 1.0 N1 A:G33 3.8 15.0 1.0 C6 A:G30 3.9 13.5 1.0 N1 A:G27 3.9 16.1 1.0 C6 A:G25 3.9 13.9 1.0 N1 A:G22 3.9 15.8 1.0 N1 A:G35 4.0 15.9 1.0 C6 A:A37 4.0 16.5 1.0 N1 A:G25 4.1 13.8 1.0 N1 A:G21 4.1 15.3 1.0 N1 A:G30 4.2 13.6 1.0 N1 A:A37 4.7 18.9 1.0 C5 A:A37 4.8 16.2 1.0 C5 A:G21 4.8 14.6 1.0 C5 A:G22 4.9 16.8 1.0 C5 A:G33 4.9 15.1 1.0 C5 A:G18 5.0 15.8 1.0 C5 A:G30 5.0 13.7 1.0

L.F.M.Passalacqua, A.R.Ferre-D'amare. Wobble Beetroot (A16U-U38G) Dimer Bound to Dfho To Be Published.