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Potassium in PDB 8f01: Thaumatin Anomalous Dataset at 293 K and 7.1 Kev

Protein crystallography data

The structure of Thaumatin Anomalous Dataset at 293 K and 7.1 Kev, PDB code: 8f01 was solved by T.Doukov, F.Yabukarski, D.Herschlag, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.35 / 1.80
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 58.96, 58.96, 151.243, 90, 90, 90
R / Rfree (%) 14.1 / 16.1

Potassium Binding Sites:

The binding sites of Potassium atom in the Thaumatin Anomalous Dataset at 293 K and 7.1 Kev (pdb code 8f01). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Thaumatin Anomalous Dataset at 293 K and 7.1 Kev, PDB code: 8f01:

Potassium binding site 1 out of 1 in 8f01

Go back to Potassium Binding Sites List in 8f01
Potassium binding site 1 out of 1 in the Thaumatin Anomalous Dataset at 293 K and 7.1 Kev


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Thaumatin Anomalous Dataset at 293 K and 7.1 Kev within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K301

b:29.3
occ:0.56
OG1 A:THR206 2.9 46.1 1.0
N A:THR206 3.3 26.1 1.0
O A:HOH479 3.3 55.8 1.0
C A:CYS204 3.5 20.3 1.0
CA A:CYS204 3.5 18.8 1.0
N A:PRO205 3.5 21.5 1.0
CD A:PRO205 3.6 21.3 1.0
CG A:PRO111 3.7 25.4 1.0
CB A:PRO111 3.8 23.1 1.0
CB A:THR206 3.8 40.1 1.0
CA A:THR206 4.0 34.4 1.0
CG2 A:THR206 4.1 40.7 1.0
O A:CYS204 4.1 22.1 1.0
CB A:ALA127 4.1 30.3 1.0
CB A:CYS204 4.1 22.5 1.0
CG A:PRO205 4.2 23.9 1.0
N A:ALA207 4.3 47.5 1.0
O A:ALA127 4.3 49.8 1.0
C A:PRO205 4.3 24.7 1.0
C A:THR206 4.4 45.4 1.0
CA A:PRO205 4.4 23.2 1.0
CA A:ALA127 4.6 31.1 1.0
N A:CYS204 4.7 18.6 1.0
C A:ALA127 4.9 33.4 1.0

Reference:

T.Doukov, D.Herschlag, F.Yabukarski. Obtaining Anomalous and Ensemble Information From Protein Crystals From 220 K Up to Physiological Temperatures. Acta Crystallogr D Struct V. 79 212 2023BIOL.
ISSN: ISSN 2059-7983
PubMed: 36876431
DOI: 10.1107/S205979832300089X
Page generated: Mon Aug 12 23:36:41 2024

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