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Potassium in PDB 8eyw: Beetroot Dimer Bound to Tht

Protein crystallography data

The structure of Beetroot Dimer Bound to Tht, PDB code: 8eyw was solved by L.F.M.Passalacqua, A.R.Ferre-D'amare, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.30 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 29.687, 50.566, 94.74, 90, 93.18, 90
R / Rfree (%) 18 / 22

Potassium Binding Sites:

The binding sites of Potassium atom in the Beetroot Dimer Bound to Tht (pdb code 8eyw). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 5 binding sites of Potassium where determined in the Beetroot Dimer Bound to Tht, PDB code: 8eyw:
Jump to Potassium binding site number: 1; 2; 3; 4; 5;

Potassium binding site 1 out of 5 in 8eyw

Go back to Potassium Binding Sites List in 8eyw
Potassium binding site 1 out of 5 in the Beetroot Dimer Bound to Tht


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Beetroot Dimer Bound to Tht within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K101

b:42.2
occ:1.00
O6 A:G20 2.8 21.5 1.0
O6 B:G20 2.8 25.1 1.0
O6 B:G24 2.9 23.7 0.2
O6 B:G32 2.9 21.9 1.0
O6 B:G24 3.0 23.7 0.2
O6 A:G29 3.0 20.0 1.0
O6 A:G32 3.0 29.1 1.0
O6 B:G24 3.1 23.8 0.5
O6 A:G24 3.1 20.4 1.0
O6 B:G29 3.1 23.2 1.0
K A:K101 3.4 28.2 1.0
C6 B:G32 3.5 28.6 1.0
K B:K102 3.5 31.2 1.0
C6 A:G29 3.7 20.0 1.0
C6 A:G32 3.7 22.8 1.0
C6 A:G20 3.7 20.5 1.0
C6 B:G29 3.7 21.4 1.0
C6 B:G24 3.8 23.4 0.2
C6 B:G20 3.8 20.2 1.0
C6 A:G24 3.8 20.6 1.0
N1 B:G29 3.8 22.0 1.0
N1 B:G32 3.9 29.0 1.0
C6 B:G24 3.9 23.2 0.5
N1 A:G29 3.9 19.8 1.0
C6 B:G24 3.9 23.2 0.2
N1 A:G24 4.0 20.7 1.0
N1 B:G24 4.0 23.8 0.2
N1 A:G32 4.0 23.6 1.0
N1 B:G24 4.0 23.6 0.5
N1 A:G20 4.0 21.4 1.0
N1 B:G20 4.1 24.1 1.0
N1 B:G24 4.3 24.0 0.2
C5 B:G32 4.6 21.6 1.0
C5 A:G32 4.8 28.0 1.0
C5 A:G29 4.8 20.7 1.0
C5 B:G29 4.9 23.1 1.0
C5 A:G20 5.0 25.1 1.0
C5 A:G24 5.0 23.4 1.0

Potassium binding site 2 out of 5 in 8eyw

Go back to Potassium Binding Sites List in 8eyw
Potassium binding site 2 out of 5 in the Beetroot Dimer Bound to Tht


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Beetroot Dimer Bound to Tht within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K102

b:31.2
occ:1.00
O6 B:G30 2.7 23.1 1.0
O6 B:G32 2.8 21.9 1.0
O6 B:G33 2.8 22.7 1.0
O6 B:G24 2.8 23.7 0.2
O6 B:G21 2.8 21.8 1.0
O6 B:G25 2.8 22.3 1.0
O6 B:G29 2.8 23.2 1.0
O6 B:G24 2.9 23.8 0.5
O6 B:G20 3.0 25.1 1.0
O6 B:G24 3.1 23.7 0.2
K B:K103 3.4 27.6 1.0
K B:K101 3.5 42.2 1.0
C6 B:G21 3.6 23.2 1.0
C6 B:G33 3.6 22.2 1.0
C6 B:G24 3.6 23.2 0.5
C6 B:G24 3.6 23.2 0.2
C6 B:G30 3.6 24.3 1.0
C6 B:G32 3.7 28.6 1.0
C6 B:G25 3.7 22.7 1.0
C6 B:G29 3.7 21.4 1.0
N1 B:G24 3.8 23.6 0.5
C6 B:G20 3.8 20.2 1.0
C6 B:G24 3.8 23.4 0.2
N1 B:G21 3.9 22.0 1.0
N1 B:G33 3.9 22.8 1.0
N1 B:G24 3.9 24.0 0.2
N1 B:G32 3.9 29.0 1.0
N1 B:G30 4.0 23.0 1.0
N1 B:G29 4.0 22.0 1.0
N1 B:G25 4.0 23.0 1.0
N1 B:G24 4.0 23.8 0.2
N1 B:G20 4.1 24.1 1.0
C5 B:G21 4.8 23.3 1.0
C5 B:G33 4.8 35.2 1.0
C5 B:G24 4.8 24.9 0.2
C5 B:G30 4.9 24.7 1.0
C5 B:G24 4.9 25.0 0.5
C5 B:G20 4.9 20.4 1.0
O6 B:G35 5.0 24.5 1.0
C5 B:G25 5.0 24.9 1.0
C5 B:G32 5.0 21.6 1.0
C5 B:G24 5.0 25.0 0.2
C5 B:G29 5.0 23.1 1.0
C2 B:G24 5.0 25.5 0.5

Potassium binding site 3 out of 5 in 8eyw

Go back to Potassium Binding Sites List in 8eyw
Potassium binding site 3 out of 5 in the Beetroot Dimer Bound to Tht


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Beetroot Dimer Bound to Tht within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K103

b:27.6
occ:1.00
O6 B:G35 2.6 24.5 1.0
O6 B:G22 2.7 24.0 1.0
O6 B:G18 2.8 24.2 1.0
O6 B:G27 2.8 24.8 1.0
O6 B:G21 2.8 21.8 1.0
O6 B:G33 2.8 22.7 1.0
O6 B:G30 2.9 23.1 1.0
O6 B:G25 2.9 22.3 1.0
K B:K102 3.4 31.2 1.0
C6 B:G35 3.5 25.0 1.0
N6 B:A37 3.5 26.1 1.0
C6 B:G22 3.6 28.5 1.0
C6 B:G27 3.7 25.2 1.0
C6 B:G18 3.7 24.1 1.0
C6 B:G33 3.7 22.2 1.0
C6 B:G30 3.7 24.3 1.0
C6 B:G25 3.7 22.7 1.0
N1 B:G35 3.7 24.9 1.0
C6 B:G21 3.7 23.2 1.0
N1 B:G27 3.9 28.8 1.0
N1 B:G18 3.9 29.1 1.0
N1 B:G22 3.9 27.0 1.0
N1 B:G33 4.0 22.8 1.0
N1 B:G25 4.0 23.0 1.0
N1 B:G30 4.1 23.0 1.0
N1 B:G21 4.1 22.0 1.0
C6 B:A37 4.2 27.0 1.0
N1 B:A37 4.7 28.2 1.0
C5 B:G30 4.9 24.7 1.0
C5 B:G35 4.9 28.7 1.0
C5 B:G22 4.9 24.4 1.0
C5 B:G25 4.9 24.9 1.0
C5 B:G33 5.0 35.2 1.0
C5 B:G27 5.0 25.8 1.0
C5 B:G18 5.0 24.4 1.0
C5 B:G21 5.0 23.3 1.0

Potassium binding site 4 out of 5 in 8eyw

Go back to Potassium Binding Sites List in 8eyw
Potassium binding site 4 out of 5 in the Beetroot Dimer Bound to Tht


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Beetroot Dimer Bound to Tht within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K101

b:28.2
occ:1.00
O6 A:G33 2.7 19.9 1.0
O6 A:G25 2.7 20.9 1.0
O6 A:G32 2.8 29.1 1.0
O6 A:G29 2.8 20.0 1.0
O6 A:G21 2.8 28.2 1.0
O6 A:G24 2.8 20.4 1.0
O6 A:G20 2.9 21.5 1.0
O6 A:G30 2.9 20.1 1.0
K B:K101 3.4 42.2 1.0
K A:K102 3.4 22.8 1.0
C6 A:G21 3.6 22.1 1.0
C6 A:G25 3.6 20.7 1.0
C6 A:G20 3.6 20.5 1.0
C6 A:G33 3.6 21.3 1.0
C6 A:G29 3.7 20.0 1.0
C6 A:G30 3.7 20.0 1.0
C6 A:G32 3.7 22.8 1.0
C6 A:G24 3.7 20.6 1.0
N1 A:G21 3.8 20.8 1.0
N1 A:G29 3.9 19.8 1.0
N1 A:G25 3.9 22.1 1.0
N1 A:G20 3.9 21.4 1.0
N1 A:G33 4.0 20.4 1.0
N1 A:G30 4.0 19.9 1.0
N1 A:G32 4.0 23.6 1.0
N1 A:G24 4.0 20.7 1.0
C5 A:G21 4.7 21.0 1.0
C5 A:G20 4.8 25.1 1.0
C5 A:G25 4.8 21.3 1.0
C5 A:G33 4.9 20.3 1.0
C5 A:G29 4.9 20.7 1.0
C5 A:G30 5.0 22.0 1.0

Potassium binding site 5 out of 5 in 8eyw

Go back to Potassium Binding Sites List in 8eyw
Potassium binding site 5 out of 5 in the Beetroot Dimer Bound to Tht


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Beetroot Dimer Bound to Tht within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K102

b:22.8
occ:1.00
O6 A:G35 2.6 24.5 1.0
O6 A:G27 2.7 22.0 1.0
O6 A:G22 2.8 21.3 1.0
O6 A:G21 2.8 28.2 1.0
O6 A:G30 2.9 20.1 1.0
O6 A:G18 2.9 21.1 1.0
O6 A:G33 2.9 19.9 1.0
O6 A:G25 2.9 20.9 1.0
K A:K101 3.4 28.2 1.0
N6 A:A37 3.5 22.0 1.0
C6 A:G27 3.6 21.6 1.0
C6 A:G35 3.6 26.2 1.0
C6 A:G30 3.6 20.0 1.0
C6 A:G22 3.7 21.7 1.0
C6 A:G21 3.7 22.1 1.0
C6 A:G33 3.7 21.3 1.0
C6 A:G18 3.7 28.2 1.0
C6 A:G25 3.8 20.7 1.0
N1 A:G35 3.9 20.9 1.0
N1 A:G27 3.9 23.4 1.0
N1 A:G30 3.9 19.9 1.0
N1 A:G33 4.0 20.4 1.0
N1 A:G22 4.0 21.9 1.0
N1 A:G25 4.0 22.1 1.0
N1 A:G18 4.0 25.3 1.0
N1 A:G21 4.0 20.8 1.0
C6 A:A37 4.3 22.4 1.0
C5 A:G27 4.8 22.2 1.0
C5 A:G30 4.8 22.0 1.0
C5 A:G33 4.9 20.3 1.0
C5 A:G21 4.9 21.0 1.0
C5 A:G18 4.9 27.5 1.0
C5 A:G35 4.9 21.3 1.0
N1 A:A37 4.9 22.9 1.0
C5 A:G22 4.9 22.1 1.0

Reference:

L.F.M.Passalacqua, A.R.Ferre-D'amare. Structure of Beetroot Dimer Bound to Tht To Be Published.
Page generated: Mon Aug 12 23:36:41 2024

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