Potassium in PDB 8eyw: Beetroot Dimer Bound to Tht
Protein crystallography data
The structure of Beetroot Dimer Bound to Tht, PDB code: 8eyw
was solved by
L.F.M.Passalacqua,
A.R.Ferre-D'amare,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.30 /
2.10
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
29.687,
50.566,
94.74,
90,
93.18,
90
|
R / Rfree (%)
|
18 /
22
|
Potassium Binding Sites:
The binding sites of Potassium atom in the Beetroot Dimer Bound to Tht
(pdb code 8eyw). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 5 binding sites of Potassium where determined in the
Beetroot Dimer Bound to Tht, PDB code: 8eyw:
Jump to Potassium binding site number:
1;
2;
3;
4;
5;
Potassium binding site 1 out
of 5 in 8eyw
Go back to
Potassium Binding Sites List in 8eyw
Potassium binding site 1 out
of 5 in the Beetroot Dimer Bound to Tht
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Beetroot Dimer Bound to Tht within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K101
b:42.2
occ:1.00
|
O6
|
A:G20
|
2.8
|
21.5
|
1.0
|
O6
|
B:G20
|
2.8
|
25.1
|
1.0
|
O6
|
B:G24
|
2.9
|
23.7
|
0.2
|
O6
|
B:G32
|
2.9
|
21.9
|
1.0
|
O6
|
B:G24
|
3.0
|
23.7
|
0.2
|
O6
|
A:G29
|
3.0
|
20.0
|
1.0
|
O6
|
A:G32
|
3.0
|
29.1
|
1.0
|
O6
|
B:G24
|
3.1
|
23.8
|
0.5
|
O6
|
A:G24
|
3.1
|
20.4
|
1.0
|
O6
|
B:G29
|
3.1
|
23.2
|
1.0
|
K
|
A:K101
|
3.4
|
28.2
|
1.0
|
C6
|
B:G32
|
3.5
|
28.6
|
1.0
|
K
|
B:K102
|
3.5
|
31.2
|
1.0
|
C6
|
A:G29
|
3.7
|
20.0
|
1.0
|
C6
|
A:G32
|
3.7
|
22.8
|
1.0
|
C6
|
A:G20
|
3.7
|
20.5
|
1.0
|
C6
|
B:G29
|
3.7
|
21.4
|
1.0
|
C6
|
B:G24
|
3.8
|
23.4
|
0.2
|
C6
|
B:G20
|
3.8
|
20.2
|
1.0
|
C6
|
A:G24
|
3.8
|
20.6
|
1.0
|
N1
|
B:G29
|
3.8
|
22.0
|
1.0
|
N1
|
B:G32
|
3.9
|
29.0
|
1.0
|
C6
|
B:G24
|
3.9
|
23.2
|
0.5
|
N1
|
A:G29
|
3.9
|
19.8
|
1.0
|
C6
|
B:G24
|
3.9
|
23.2
|
0.2
|
N1
|
A:G24
|
4.0
|
20.7
|
1.0
|
N1
|
B:G24
|
4.0
|
23.8
|
0.2
|
N1
|
A:G32
|
4.0
|
23.6
|
1.0
|
N1
|
B:G24
|
4.0
|
23.6
|
0.5
|
N1
|
A:G20
|
4.0
|
21.4
|
1.0
|
N1
|
B:G20
|
4.1
|
24.1
|
1.0
|
N1
|
B:G24
|
4.3
|
24.0
|
0.2
|
C5
|
B:G32
|
4.6
|
21.6
|
1.0
|
C5
|
A:G32
|
4.8
|
28.0
|
1.0
|
C5
|
A:G29
|
4.8
|
20.7
|
1.0
|
C5
|
B:G29
|
4.9
|
23.1
|
1.0
|
C5
|
A:G20
|
5.0
|
25.1
|
1.0
|
C5
|
A:G24
|
5.0
|
23.4
|
1.0
|
|
Potassium binding site 2 out
of 5 in 8eyw
Go back to
Potassium Binding Sites List in 8eyw
Potassium binding site 2 out
of 5 in the Beetroot Dimer Bound to Tht
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Beetroot Dimer Bound to Tht within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K102
b:31.2
occ:1.00
|
O6
|
B:G30
|
2.7
|
23.1
|
1.0
|
O6
|
B:G32
|
2.8
|
21.9
|
1.0
|
O6
|
B:G33
|
2.8
|
22.7
|
1.0
|
O6
|
B:G24
|
2.8
|
23.7
|
0.2
|
O6
|
B:G21
|
2.8
|
21.8
|
1.0
|
O6
|
B:G25
|
2.8
|
22.3
|
1.0
|
O6
|
B:G29
|
2.8
|
23.2
|
1.0
|
O6
|
B:G24
|
2.9
|
23.8
|
0.5
|
O6
|
B:G20
|
3.0
|
25.1
|
1.0
|
O6
|
B:G24
|
3.1
|
23.7
|
0.2
|
K
|
B:K103
|
3.4
|
27.6
|
1.0
|
K
|
B:K101
|
3.5
|
42.2
|
1.0
|
C6
|
B:G21
|
3.6
|
23.2
|
1.0
|
C6
|
B:G33
|
3.6
|
22.2
|
1.0
|
C6
|
B:G24
|
3.6
|
23.2
|
0.5
|
C6
|
B:G24
|
3.6
|
23.2
|
0.2
|
C6
|
B:G30
|
3.6
|
24.3
|
1.0
|
C6
|
B:G32
|
3.7
|
28.6
|
1.0
|
C6
|
B:G25
|
3.7
|
22.7
|
1.0
|
C6
|
B:G29
|
3.7
|
21.4
|
1.0
|
N1
|
B:G24
|
3.8
|
23.6
|
0.5
|
C6
|
B:G20
|
3.8
|
20.2
|
1.0
|
C6
|
B:G24
|
3.8
|
23.4
|
0.2
|
N1
|
B:G21
|
3.9
|
22.0
|
1.0
|
N1
|
B:G33
|
3.9
|
22.8
|
1.0
|
N1
|
B:G24
|
3.9
|
24.0
|
0.2
|
N1
|
B:G32
|
3.9
|
29.0
|
1.0
|
N1
|
B:G30
|
4.0
|
23.0
|
1.0
|
N1
|
B:G29
|
4.0
|
22.0
|
1.0
|
N1
|
B:G25
|
4.0
|
23.0
|
1.0
|
N1
|
B:G24
|
4.0
|
23.8
|
0.2
|
N1
|
B:G20
|
4.1
|
24.1
|
1.0
|
C5
|
B:G21
|
4.8
|
23.3
|
1.0
|
C5
|
B:G33
|
4.8
|
35.2
|
1.0
|
C5
|
B:G24
|
4.8
|
24.9
|
0.2
|
C5
|
B:G30
|
4.9
|
24.7
|
1.0
|
C5
|
B:G24
|
4.9
|
25.0
|
0.5
|
C5
|
B:G20
|
4.9
|
20.4
|
1.0
|
O6
|
B:G35
|
5.0
|
24.5
|
1.0
|
C5
|
B:G25
|
5.0
|
24.9
|
1.0
|
C5
|
B:G32
|
5.0
|
21.6
|
1.0
|
C5
|
B:G24
|
5.0
|
25.0
|
0.2
|
C5
|
B:G29
|
5.0
|
23.1
|
1.0
|
C2
|
B:G24
|
5.0
|
25.5
|
0.5
|
|
Potassium binding site 3 out
of 5 in 8eyw
Go back to
Potassium Binding Sites List in 8eyw
Potassium binding site 3 out
of 5 in the Beetroot Dimer Bound to Tht
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Beetroot Dimer Bound to Tht within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K103
b:27.6
occ:1.00
|
O6
|
B:G35
|
2.6
|
24.5
|
1.0
|
O6
|
B:G22
|
2.7
|
24.0
|
1.0
|
O6
|
B:G18
|
2.8
|
24.2
|
1.0
|
O6
|
B:G27
|
2.8
|
24.8
|
1.0
|
O6
|
B:G21
|
2.8
|
21.8
|
1.0
|
O6
|
B:G33
|
2.8
|
22.7
|
1.0
|
O6
|
B:G30
|
2.9
|
23.1
|
1.0
|
O6
|
B:G25
|
2.9
|
22.3
|
1.0
|
K
|
B:K102
|
3.4
|
31.2
|
1.0
|
C6
|
B:G35
|
3.5
|
25.0
|
1.0
|
N6
|
B:A37
|
3.5
|
26.1
|
1.0
|
C6
|
B:G22
|
3.6
|
28.5
|
1.0
|
C6
|
B:G27
|
3.7
|
25.2
|
1.0
|
C6
|
B:G18
|
3.7
|
24.1
|
1.0
|
C6
|
B:G33
|
3.7
|
22.2
|
1.0
|
C6
|
B:G30
|
3.7
|
24.3
|
1.0
|
C6
|
B:G25
|
3.7
|
22.7
|
1.0
|
N1
|
B:G35
|
3.7
|
24.9
|
1.0
|
C6
|
B:G21
|
3.7
|
23.2
|
1.0
|
N1
|
B:G27
|
3.9
|
28.8
|
1.0
|
N1
|
B:G18
|
3.9
|
29.1
|
1.0
|
N1
|
B:G22
|
3.9
|
27.0
|
1.0
|
N1
|
B:G33
|
4.0
|
22.8
|
1.0
|
N1
|
B:G25
|
4.0
|
23.0
|
1.0
|
N1
|
B:G30
|
4.1
|
23.0
|
1.0
|
N1
|
B:G21
|
4.1
|
22.0
|
1.0
|
C6
|
B:A37
|
4.2
|
27.0
|
1.0
|
N1
|
B:A37
|
4.7
|
28.2
|
1.0
|
C5
|
B:G30
|
4.9
|
24.7
|
1.0
|
C5
|
B:G35
|
4.9
|
28.7
|
1.0
|
C5
|
B:G22
|
4.9
|
24.4
|
1.0
|
C5
|
B:G25
|
4.9
|
24.9
|
1.0
|
C5
|
B:G33
|
5.0
|
35.2
|
1.0
|
C5
|
B:G27
|
5.0
|
25.8
|
1.0
|
C5
|
B:G18
|
5.0
|
24.4
|
1.0
|
C5
|
B:G21
|
5.0
|
23.3
|
1.0
|
|
Potassium binding site 4 out
of 5 in 8eyw
Go back to
Potassium Binding Sites List in 8eyw
Potassium binding site 4 out
of 5 in the Beetroot Dimer Bound to Tht
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 4 of Beetroot Dimer Bound to Tht within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K101
b:28.2
occ:1.00
|
O6
|
A:G33
|
2.7
|
19.9
|
1.0
|
O6
|
A:G25
|
2.7
|
20.9
|
1.0
|
O6
|
A:G32
|
2.8
|
29.1
|
1.0
|
O6
|
A:G29
|
2.8
|
20.0
|
1.0
|
O6
|
A:G21
|
2.8
|
28.2
|
1.0
|
O6
|
A:G24
|
2.8
|
20.4
|
1.0
|
O6
|
A:G20
|
2.9
|
21.5
|
1.0
|
O6
|
A:G30
|
2.9
|
20.1
|
1.0
|
K
|
B:K101
|
3.4
|
42.2
|
1.0
|
K
|
A:K102
|
3.4
|
22.8
|
1.0
|
C6
|
A:G21
|
3.6
|
22.1
|
1.0
|
C6
|
A:G25
|
3.6
|
20.7
|
1.0
|
C6
|
A:G20
|
3.6
|
20.5
|
1.0
|
C6
|
A:G33
|
3.6
|
21.3
|
1.0
|
C6
|
A:G29
|
3.7
|
20.0
|
1.0
|
C6
|
A:G30
|
3.7
|
20.0
|
1.0
|
C6
|
A:G32
|
3.7
|
22.8
|
1.0
|
C6
|
A:G24
|
3.7
|
20.6
|
1.0
|
N1
|
A:G21
|
3.8
|
20.8
|
1.0
|
N1
|
A:G29
|
3.9
|
19.8
|
1.0
|
N1
|
A:G25
|
3.9
|
22.1
|
1.0
|
N1
|
A:G20
|
3.9
|
21.4
|
1.0
|
N1
|
A:G33
|
4.0
|
20.4
|
1.0
|
N1
|
A:G30
|
4.0
|
19.9
|
1.0
|
N1
|
A:G32
|
4.0
|
23.6
|
1.0
|
N1
|
A:G24
|
4.0
|
20.7
|
1.0
|
C5
|
A:G21
|
4.7
|
21.0
|
1.0
|
C5
|
A:G20
|
4.8
|
25.1
|
1.0
|
C5
|
A:G25
|
4.8
|
21.3
|
1.0
|
C5
|
A:G33
|
4.9
|
20.3
|
1.0
|
C5
|
A:G29
|
4.9
|
20.7
|
1.0
|
C5
|
A:G30
|
5.0
|
22.0
|
1.0
|
|
Potassium binding site 5 out
of 5 in 8eyw
Go back to
Potassium Binding Sites List in 8eyw
Potassium binding site 5 out
of 5 in the Beetroot Dimer Bound to Tht
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 5 of Beetroot Dimer Bound to Tht within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K102
b:22.8
occ:1.00
|
O6
|
A:G35
|
2.6
|
24.5
|
1.0
|
O6
|
A:G27
|
2.7
|
22.0
|
1.0
|
O6
|
A:G22
|
2.8
|
21.3
|
1.0
|
O6
|
A:G21
|
2.8
|
28.2
|
1.0
|
O6
|
A:G30
|
2.9
|
20.1
|
1.0
|
O6
|
A:G18
|
2.9
|
21.1
|
1.0
|
O6
|
A:G33
|
2.9
|
19.9
|
1.0
|
O6
|
A:G25
|
2.9
|
20.9
|
1.0
|
K
|
A:K101
|
3.4
|
28.2
|
1.0
|
N6
|
A:A37
|
3.5
|
22.0
|
1.0
|
C6
|
A:G27
|
3.6
|
21.6
|
1.0
|
C6
|
A:G35
|
3.6
|
26.2
|
1.0
|
C6
|
A:G30
|
3.6
|
20.0
|
1.0
|
C6
|
A:G22
|
3.7
|
21.7
|
1.0
|
C6
|
A:G21
|
3.7
|
22.1
|
1.0
|
C6
|
A:G33
|
3.7
|
21.3
|
1.0
|
C6
|
A:G18
|
3.7
|
28.2
|
1.0
|
C6
|
A:G25
|
3.8
|
20.7
|
1.0
|
N1
|
A:G35
|
3.9
|
20.9
|
1.0
|
N1
|
A:G27
|
3.9
|
23.4
|
1.0
|
N1
|
A:G30
|
3.9
|
19.9
|
1.0
|
N1
|
A:G33
|
4.0
|
20.4
|
1.0
|
N1
|
A:G22
|
4.0
|
21.9
|
1.0
|
N1
|
A:G25
|
4.0
|
22.1
|
1.0
|
N1
|
A:G18
|
4.0
|
25.3
|
1.0
|
N1
|
A:G21
|
4.0
|
20.8
|
1.0
|
C6
|
A:A37
|
4.3
|
22.4
|
1.0
|
C5
|
A:G27
|
4.8
|
22.2
|
1.0
|
C5
|
A:G30
|
4.8
|
22.0
|
1.0
|
C5
|
A:G33
|
4.9
|
20.3
|
1.0
|
C5
|
A:G21
|
4.9
|
21.0
|
1.0
|
C5
|
A:G18
|
4.9
|
27.5
|
1.0
|
C5
|
A:G35
|
4.9
|
21.3
|
1.0
|
N1
|
A:A37
|
4.9
|
22.9
|
1.0
|
C5
|
A:G22
|
4.9
|
22.1
|
1.0
|
|
Reference:
L.F.M.Passalacqua,
A.R.Ferre-D'amare.
Structure of Beetroot Dimer Bound to Tht To Be Published.
Page generated: Mon Aug 12 23:36:41 2024
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