Potassium in PDB 8eff: Cryoem of the Soluble OPA1 Tetramer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane

The structure of Cryoem of the Soluble OPA1 Tetramer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane also contains other interesting chemical elements:

Magnesium	(Mg)	4 atoms
Fluorine	(F)	16 atoms
Aluminium	(Al)	4 atoms

The binding sites of Potassium atom in the Cryoem of the Soluble OPA1 Tetramer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane (pdb code 8eff). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the Cryoem of the Soluble OPA1 Tetramer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane, PDB code: 8eff:
Jump to Potassium binding site number: 1; 2; 3; 4;

Potassium binding site 1 out of 4 in the Cryoem of the Soluble OPA1 Tetramer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Cryoem of the Soluble OPA1 Tetramer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane within 5.0Å range: probe atom residue distance (Å) B Occ A:K1004 b:30.0 occ:1.00 O2B A:GDP1001 2.7 6.3 1.0 F3 A:ALF1002 3.0 15.9 1.0 HE22 A:GLN297 3.1 121.5 1.0 HA A:SER298 3.3 85.1 1.0 NE2 A:GLN297 3.5 121.5 1.0 O A:GLN297 3.7 87.2 1.0 OE1 A:GLN297 3.8 121.5 1.0 CD A:GLN297 3.9 121.5 1.0 HE21 A:GLN297 4.0 121.5 1.0 HA A:SER318 4.2 33.5 1.0 PB A:GDP1001 4.2 7.8 1.0 CA A:SER298 4.2 85.1 1.0 O A:SER298 4.4 85.1 1.0 H A:GLY300 4.4 87.7 1.0 C A:GLN297 4.5 87.2 1.0 O A:GLU320 4.5 30.1 1.0 O1B A:GDP1001 4.5 7.1 1.0 HA2 A:GLY300 4.6 87.7 1.0 C A:SER298 4.6 85.1 1.0 HA A:MET321 4.7 26.7 1.0 HZ1 A:LYS468 4.7 131.9 1.0 N A:SER298 4.8 85.1 1.0 AL A:ALF1002 4.8 14.3 1.0 HG2 A:GLN297 4.8 121.5 1.0 H A:GLY319 4.9 26.3 1.0 N A:GLY300 5.0 87.7 1.0 HZ2 A:LYS468 5.0 131.9 1.0

Potassium binding site 2 out of 4 in the Cryoem of the Soluble OPA1 Tetramer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Cryoem of the Soluble OPA1 Tetramer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane within 5.0Å range: probe atom residue distance (Å) B Occ B:K1004 b:30.0 occ:1.00 O1A B:GDP1001 2.7 9.6 1.0 O1B B:GDP1001 2.7 5.6 1.0 F3 B:ALF1002 2.9 14.3 1.0 O B:GLN297 2.9 87.2 1.0 HA B:ALA299 2.9 87.2 1.0 O B:GLU320 3.1 30.1 1.0 CA B:ALA299 3.7 87.2 1.0 O B:SER298 3.8 85.1 1.0 N B:ALA299 3.8 87.2 1.0 C B:SER298 3.8 85.1 1.0 HA B:MET321 3.9 26.7 1.0 PB B:GDP1001 3.9 7.9 1.0 C B:GLN297 3.9 87.2 1.0 HB2 B:ALA299 3.9 118.9 1.0 PA B:GDP1001 3.9 8.2 1.0 H B:GLU320 4.0 32.2 1.0 O3A B:GDP1001 4.1 7.3 1.0 HB3 B:GLN297 4.1 121.5 1.0 C B:GLU320 4.2 27.1 1.0 H B:ALA299 4.2 87.2 1.0 CB B:ALA299 4.3 118.9 1.0 O B:GLY317 4.4 32.9 1.0 H B:MET322 4.4 24.4 1.0 O2B B:GDP1001 4.5 8.5 1.0 AL B:ALF1002 4.6 10.9 1.0 HA B:GLN297 4.6 87.2 1.0 HB1 B:ALA299 4.6 118.9 1.0 HA B:SER318 4.6 33.5 1.0 N B:SER298 4.7 85.1 1.0 CA B:GLN297 4.7 87.2 1.0 CA B:SER298 4.7 85.1 1.0 CA B:MET321 4.7 26.7 1.0 HA B:SER298 4.8 85.1 1.0 C5' B:GDP1001 4.8 7.8 1.0 N B:GLU320 4.8 32.2 1.0 N B:MET321 4.8 23.7 1.0 CB B:GLN297 4.9 121.5 1.0 C B:ALA299 4.9 87.2 1.0 F1 B:ALF1002 4.9 11.9 1.0 O2A B:GDP1001 4.9 6.9 1.0 H B:GLY319 4.9 26.3 1.0 O5' B:GDP1001 4.9 8.7 1.0 F2 B:ALF1002 4.9 12.6 1.0

Potassium binding site 3 out of 4 in the Cryoem of the Soluble OPA1 Tetramer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Cryoem of the Soluble OPA1 Tetramer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane within 5.0Å range: probe atom residue distance (Å) B Occ C:K1004 b:30.0 occ:1.00 O2B C:GDP1001 2.7 6.3 1.0 F3 C:ALF1002 3.0 15.9 1.0 HE22 C:GLN297 3.1 121.5 1.0 HA C:SER298 3.3 85.1 1.0 NE2 C:GLN297 3.5 121.5 1.0 O C:GLN297 3.7 87.2 1.0 OE1 C:GLN297 3.8 121.5 1.0 CD C:GLN297 3.9 121.5 1.0 HE21 C:GLN297 4.0 121.5 1.0 HA C:SER318 4.2 33.5 1.0 PB C:GDP1001 4.2 7.8 1.0 CA C:SER298 4.2 85.1 1.0 O C:SER298 4.4 85.1 1.0 H C:GLY300 4.4 87.7 1.0 C C:GLN297 4.5 87.2 1.0 O C:GLU320 4.5 30.1 1.0 O1B C:GDP1001 4.5 7.1 1.0 HA2 C:GLY300 4.6 87.7 1.0 C C:SER298 4.6 85.1 1.0 HA C:MET321 4.7 26.7 1.0 HZ1 C:LYS468 4.7 131.9 1.0 N C:SER298 4.8 85.1 1.0 AL C:ALF1002 4.8 14.3 1.0 HG2 C:GLN297 4.8 121.5 1.0 H C:GLY319 4.9 26.3 1.0 N C:GLY300 5.0 87.7 1.0 HZ2 C:LYS468 5.0 131.9 1.0 CG C:GLN297 5.0 121.5 1.0

Potassium binding site 4 out of 4 in the Cryoem of the Soluble OPA1 Tetramer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Cryoem of the Soluble OPA1 Tetramer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane within 5.0Å range: probe atom residue distance (Å) B Occ D:K1004 b:30.0 occ:1.00 O1A D:GDP1001 2.7 9.6 1.0 O1B D:GDP1001 2.7 5.6 1.0 F3 D:ALF1002 2.9 14.3 1.0 O D:GLN297 2.9 87.2 1.0 HA D:ALA299 2.9 87.2 1.0 O D:GLU320 3.1 30.1 1.0 CA D:ALA299 3.7 87.2 1.0 O D:SER298 3.8 85.1 1.0 N D:ALA299 3.8 87.2 1.0 C D:SER298 3.8 85.1 1.0 HA D:MET321 3.9 26.7 1.0 C D:GLN297 3.9 87.2 1.0 PB D:GDP1001 3.9 7.9 1.0 HB2 D:ALA299 3.9 118.9 1.0 PA D:GDP1001 3.9 8.2 1.0 H D:GLU320 4.0 32.2 1.0 O3A D:GDP1001 4.1 7.3 1.0 HB3 D:GLN297 4.1 121.5 1.0 C D:GLU320 4.2 27.1 1.0 H D:ALA299 4.2 87.2 1.0 CB D:ALA299 4.3 118.9 1.0 O D:GLY317 4.4 32.9 1.0 H D:MET322 4.4 24.4 1.0 O2B D:GDP1001 4.5 8.5 1.0 AL D:ALF1002 4.6 10.9 1.0 HA D:GLN297 4.6 87.2 1.0 HB1 D:ALA299 4.6 118.9 1.0 HA D:SER318 4.6 33.5 1.0 N D:SER298 4.7 85.1 1.0 CA D:GLN297 4.7 87.2 1.0 CA D:SER298 4.7 85.1 1.0 CA D:MET321 4.7 26.7 1.0 HA D:SER298 4.8 85.1 1.0 C5' D:GDP1001 4.8 7.8 1.0 N D:GLU320 4.8 32.2 1.0 N D:MET321 4.8 23.7 1.0 CB D:GLN297 4.9 121.5 1.0 C D:ALA299 4.9 87.2 1.0 F1 D:ALF1002 4.9 11.9 1.0 O2A D:GDP1001 4.9 6.9 1.0 H D:GLY319 4.9 26.3 1.0 O5' D:GDP1001 4.9 8.7 1.0 F2 D:ALF1002 4.9 12.6 1.0

S.B.Nyenhuis, X.Wu, A.E.Stanton, M.P.Strub, Y.I.Yim, B.Canagarajah, J.E.Hinshaw. OPA1 Helical Structures Give Perspective to Mitochondrial Dysfunction Nature 2023.
ISSN: ESSN 1476-4687