Potassium in PDB 8d29: Crystal Structure of Theophylline Aptamer - Apo Form
Protein crystallography data
The structure of Crystal Structure of Theophylline Aptamer - Apo Form, PDB code: 8d29
was solved by
E.Menichelli,
G.Spraggon,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 68.66 / 1.81 |
| Space group | P 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 76.151, 92.849, 93.639, 97.34, 90.32, 106.92 |
| R / Rfree (%) | 17.6 / 21.1 |
Other elements in 8d29:
The structure of Crystal Structure of Theophylline Aptamer - Apo Form also contains other interesting chemical elements:
| Sodium | (Na) | 1 atom |
Potassium Binding Sites:
The binding sites of Potassium atom in the Crystal Structure of Theophylline Aptamer - Apo Form
(pdb code 8d29). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 5 binding sites of Potassium where determined in the Crystal Structure of Theophylline Aptamer - Apo Form, PDB code: 8d29:
Jump to Potassium binding site number: 1; 2; 3; 4; 5;
In total 5 binding sites of Potassium where determined in the Crystal Structure of Theophylline Aptamer - Apo Form, PDB code: 8d29:
Jump to Potassium binding site number: 1; 2; 3; 4; 5;
Potassium binding site 1 out of 5 in 8d29
Go back to
Potassium Binding Sites List in 8d29
Potassium binding site 1 out
of 5 in the Crystal Structure of Theophylline Aptamer - Apo Form
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 1 of Crystal Structure of Theophylline Aptamer - Apo Form within 5.0Å range:
|
Potassium binding site 2 out of 5 in 8d29
Go back to
Potassium Binding Sites List in 8d29
Potassium binding site 2 out
of 5 in the Crystal Structure of Theophylline Aptamer - Apo Form
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 2 of Crystal Structure of Theophylline Aptamer - Apo Form within 5.0Å range:
|
Potassium binding site 3 out of 5 in 8d29
Go back to
Potassium Binding Sites List in 8d29
Potassium binding site 3 out
of 5 in the Crystal Structure of Theophylline Aptamer - Apo Form
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 3 of Crystal Structure of Theophylline Aptamer - Apo Form within 5.0Å range:
|
Potassium binding site 4 out of 5 in 8d29
Go back to
Potassium Binding Sites List in 8d29
Potassium binding site 4 out
of 5 in the Crystal Structure of Theophylline Aptamer - Apo Form
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 4 of Crystal Structure of Theophylline Aptamer - Apo Form within 5.0Å range:
|
Potassium binding site 5 out of 5 in 8d29
Go back to
Potassium Binding Sites List in 8d29
Potassium binding site 5 out
of 5 in the Crystal Structure of Theophylline Aptamer - Apo Form
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 5 of Crystal Structure of Theophylline Aptamer - Apo Form within 5.0Å range:
|
Reference:
E.Menichelli,
B.J.Lam,
Y.Wang,
V.S.Wang,
J.Shaffer,
K.F.Tjhung,
B.Bursulaya,
T.N.Nguyen,
T.Vo,
P.B.Alper,
C.S.Mcallister,
D.H.Jones,
G.Spraggon,
P.Y.Michellys,
J.Joslin,
G.F.Joyce,
J.Rogers.
Discovery of Small Molecules That Target A Tertiary-Structured Rna. Proc.Natl.Acad.Sci.Usa V. 119 17119 2022.
ISSN: ESSN 1091-6490
PubMed: 36413497
DOI: 10.1073/PNAS.2213117119
Page generated: Wed Apr 5 10:39:43 2023
ISSN: ESSN 1091-6490
PubMed: 36413497
DOI: 10.1073/PNAS.2213117119
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