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Potassium in PDB 8cu1: Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction) in the Presence of An Electric Field of ~0.8MV/Cm Along the Crystallographic Z Axis, 500NS, with Eightfold Extrapolation of Structure Factor Differences

Protein crystallography data

The structure of Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction) in the Presence of An Electric Field of ~0.8MV/Cm Along the Crystallographic Z Axis, 500NS, with Eightfold Extrapolation of Structure Factor Differences, PDB code: 8cu1 was solved by B.Lee, K.I.White, M.A.Socolich, M.A.Klureza, R.Henning, V.Srajer, R.Ranganathan, D.Hekstra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.42 / 2.01
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 68.816, 68.816, 90.365, 90, 90, 90
R / Rfree (%) 33.4 / 37.1

Potassium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 13;

Binding sites:

The binding sites of Potassium atom in the Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction) in the Presence of An Electric Field of ~0.8MV/Cm Along the Crystallographic Z Axis, 500NS, with Eightfold Extrapolation of Structure Factor Differences (pdb code 8cu1). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 13 binding sites of Potassium where determined in the Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction) in the Presence of An Electric Field of ~0.8MV/Cm Along the Crystallographic Z Axis, 500NS, with Eightfold Extrapolation of Structure Factor Differences, PDB code: 8cu1:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 13 in 8cu1

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Potassium binding site 1 out of 13 in the Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction) in the Presence of An Electric Field of ~0.8MV/Cm Along the Crystallographic Z Axis, 500NS, with Eightfold Extrapolation of Structure Factor Differences


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction) in the Presence of An Electric Field of ~0.8MV/Cm Along the Crystallographic Z Axis, 500NS, with Eightfold Extrapolation of Structure Factor Differences within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K207

b:7.9
occ:0.12
O A:TYR66 2.7 9.1 1.0
O A:GLY65 3.3 12.1 1.0
C A:TYR66 3.5 7.8 1.0
HA3 A:GLY67 3.8 13.0 1.0
HA A:TYR66 3.8 5.0 1.0
K A:K208 4.0 9.0 0.2
CA A:TYR66 4.2 4.2 1.0
N A:GLY67 4.3 11.8 1.0
C A:GLY65 4.4 11.8 1.0
CA A:GLY67 4.6 10.9 1.0
N A:TYR66 4.9 12.1 1.0
H A:GLY67 5.0 14.2 1.0

Potassium binding site 2 out of 13 in 8cu1

Go back to Potassium Binding Sites List in 8cu1
Potassium binding site 2 out of 13 in the Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction) in the Presence of An Electric Field of ~0.8MV/Cm Along the Crystallographic Z Axis, 500NS, with Eightfold Extrapolation of Structure Factor Differences


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction) in the Presence of An Electric Field of ~0.8MV/Cm Along the Crystallographic Z Axis, 500NS, with Eightfold Extrapolation of Structure Factor Differences within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K208

b:9.0
occ:0.22
O A:VAL64 2.8 8.3 1.0
K A:K209 2.8 14.2 0.2
O A:GLY65 2.8 12.1 1.0
HA3 A:GLY65 3.5 9.5 1.0
C A:GLY65 3.6 11.8 1.0
C A:VAL64 3.9 8.2 1.0
CA A:GLY65 3.9 7.9 1.0
K A:K207 4.0 7.9 0.1
N A:GLY65 4.4 12.9 1.0
HA A:TYR66 4.5 5.0 1.0
N A:TYR66 4.6 12.1 1.0
HA2 A:GLY65 4.8 9.5 1.0
O A:THR63 4.9 15.0 1.0

Potassium binding site 3 out of 13 in 8cu1

Go back to Potassium Binding Sites List in 8cu1
Potassium binding site 3 out of 13 in the Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction) in the Presence of An Electric Field of ~0.8MV/Cm Along the Crystallographic Z Axis, 500NS, with Eightfold Extrapolation of Structure Factor Differences


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction) in the Presence of An Electric Field of ~0.8MV/Cm Along the Crystallographic Z Axis, 500NS, with Eightfold Extrapolation of Structure Factor Differences within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K209

b:14.2
occ:0.25
O A:THR63 2.7 15.0 1.0
K A:K208 2.8 9.0 0.2
O A:VAL64 2.8 8.3 1.0
K A:K210 3.2 12.2 0.2
C A:VAL64 3.6 8.2 1.0
HA A:VAL64 3.7 8.9 1.0
C A:THR63 3.9 6.9 1.0
CA A:VAL64 4.1 7.4 1.0
HA3 A:GLY65 4.2 9.5 1.0
N A:GLY65 4.5 12.9 1.0
N A:VAL64 4.5 10.5 1.0
HB A:THR63 4.5 9.3 1.0
CA A:GLY65 4.8 7.9 1.0
CA A:THR63 5.0 7.1 1.0
O A:GLY65 5.0 12.1 1.0

Potassium binding site 4 out of 13 in 8cu1

Go back to Potassium Binding Sites List in 8cu1
Potassium binding site 4 out of 13 in the Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction) in the Presence of An Electric Field of ~0.8MV/Cm Along the Crystallographic Z Axis, 500NS, with Eightfold Extrapolation of Structure Factor Differences


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction) in the Presence of An Electric Field of ~0.8MV/Cm Along the Crystallographic Z Axis, 500NS, with Eightfold Extrapolation of Structure Factor Differences within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K210

b:12.2
occ:0.25
O A:THR63 2.7 15.0 1.0
OG1 A:THR63 3.0 14.4 1.0
HB A:THR63 3.1 9.3 1.0
K A:K209 3.2 14.2 0.2
CB A:THR63 3.6 7.7 1.0
C A:THR63 3.7 6.9 1.0
HG1 A:THR63 3.7 17.3 1.0
CA A:THR63 4.3 7.1 1.0
HA A:VAL64 4.4 8.9 1.0
N A:VAL64 4.7 10.5 1.0
HA A:THR63 4.8 8.5 1.0
HG23 A:THR63 4.8 13.5 1.0
CG2 A:THR63 4.9 11.3 1.0
O A:THR62 5.0 12.6 1.0
CA A:VAL64 5.0 7.4 1.0

Potassium binding site 5 out of 13 in 8cu1

Go back to Potassium Binding Sites List in 8cu1
Potassium binding site 5 out of 13 in the Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction) in the Presence of An Electric Field of ~0.8MV/Cm Along the Crystallographic Z Axis, 500NS, with Eightfold Extrapolation of Structure Factor Differences


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction) in the Presence of An Electric Field of ~0.8MV/Cm Along the Crystallographic Z Axis, 500NS, with Eightfold Extrapolation of Structure Factor Differences within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K211

b:59.3
occ:0.25
H52 A:MPD202 3.2 63.3 1.0
C5 A:MPD202 4.3 52.7 1.0
H53 A:MPD202 4.6 63.3 1.0
H51 A:MPD202 4.7 63.3 1.0
HE2 A:PHE92 4.9 23.8 0.5
K A:K213 4.9 55.1 0.2
H4 A:MPD202 5.0 70.4 1.0

Potassium binding site 6 out of 13 in 8cu1

Go back to Potassium Binding Sites List in 8cu1
Potassium binding site 6 out of 13 in the Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction) in the Presence of An Electric Field of ~0.8MV/Cm Along the Crystallographic Z Axis, 500NS, with Eightfold Extrapolation of Structure Factor Differences


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction) in the Presence of An Electric Field of ~0.8MV/Cm Along the Crystallographic Z Axis, 500NS, with Eightfold Extrapolation of Structure Factor Differences within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K212

b:36.6
occ:0.25
O A:HOH323 3.2 28.0 1.0
O A:HOH322 4.8 29.0 1.0

Potassium binding site 7 out of 13 in 8cu1

Go back to Potassium Binding Sites List in 8cu1
Potassium binding site 7 out of 13 in the Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction) in the Presence of An Electric Field of ~0.8MV/Cm Along the Crystallographic Z Axis, 500NS, with Eightfold Extrapolation of Structure Factor Differences


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction) in the Presence of An Electric Field of ~0.8MV/Cm Along the Crystallographic Z Axis, 500NS, with Eightfold Extrapolation of Structure Factor Differences within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K213

b:55.1
occ:0.25
HE2 A:PHE92 3.7 23.8 0.5
HZ A:PHE92 3.9 21.9 0.5
CE2 A:PHE92 4.4 19.8 0.5
CZ A:PHE92 4.4 18.2 0.5
OG1 A:THR63 4.6 14.4 1.0
HG1 A:THR63 4.6 17.3 1.0
HZ A:PHE92 4.9 21.2 0.5
K A:K211 4.9 59.3 0.2

Potassium binding site 8 out of 13 in 8cu1

Go back to Potassium Binding Sites List in 8cu1
Potassium binding site 8 out of 13 in the Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction) in the Presence of An Electric Field of ~0.8MV/Cm Along the Crystallographic Z Axis, 500NS, with Eightfold Extrapolation of Structure Factor Differences


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction) in the Presence of An Electric Field of ~0.8MV/Cm Along the Crystallographic Z Axis, 500NS, with Eightfold Extrapolation of Structure Factor Differences within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K212

b:18.2
occ:0.21
O B:TYR66 2.8 15.4 1.0
O B:GLY65 3.0 21.0 1.0
C B:TYR66 3.5 17.4 1.0
K B:K213 3.5 15.5 0.2
HA B:TYR66 3.7 22.3 1.0
HA3 B:GLY67 3.9 19.5 1.0
CA B:TYR66 4.1 18.6 1.0
C B:GLY65 4.1 20.1 1.0
N B:GLY67 4.3 14.2 1.0
CA B:GLY67 4.6 16.3 1.0
N B:TYR66 4.6 17.1 1.0
H B:GLY67 5.0 17.0 1.0

Potassium binding site 9 out of 13 in 8cu1

Go back to Potassium Binding Sites List in 8cu1
Potassium binding site 9 out of 13 in the Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction) in the Presence of An Electric Field of ~0.8MV/Cm Along the Crystallographic Z Axis, 500NS, with Eightfold Extrapolation of Structure Factor Differences


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction) in the Presence of An Electric Field of ~0.8MV/Cm Along the Crystallographic Z Axis, 500NS, with Eightfold Extrapolation of Structure Factor Differences within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K213

b:15.5
occ:0.25
O B:VAL64 2.8 17.2 1.0
O B:GLY65 3.0 21.0 1.0
K B:K214 3.1 17.2 0.2
HA3 B:GLY65 3.4 19.4 1.0
K B:K212 3.5 18.2 0.2
C B:GLY65 3.5 20.1 1.0
CA B:GLY65 3.8 16.1 1.0
C B:VAL64 3.9 18.3 1.0
N B:GLY65 4.3 17.1 1.0
HA B:TYR66 4.4 22.3 1.0
N B:TYR66 4.4 17.1 1.0
HA2 B:GLY65 4.7 19.4 1.0
CA B:TYR66 4.9 18.6 1.0

Potassium binding site 10 out of 13 in 8cu1

Go back to Potassium Binding Sites List in 8cu1
Potassium binding site 10 out of 13 in the Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction) in the Presence of An Electric Field of ~0.8MV/Cm Along the Crystallographic Z Axis, 500NS, with Eightfold Extrapolation of Structure Factor Differences


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Structure of A K+ Selective Nak Mutant (NAK2K, Laue Diffraction) in the Presence of An Electric Field of ~0.8MV/Cm Along the Crystallographic Z Axis, 500NS, with Eightfold Extrapolation of Structure Factor Differences within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K214

b:17.2
occ:0.25
O B:THR63 2.6 20.2 1.0
O B:VAL64 2.8 17.2 1.0
K B:K215 2.9 17.5 0.2
K B:K213 3.1 15.5 0.2
C B:VAL64 3.5 18.3 1.0
HA B:VAL64 3.6 19.5 1.0
C B:THR63 3.8 20.4 1.0
CA B:VAL64 4.1 16.2 1.0
HA3 B:GLY65 4.2 19.4 1.0
HB B:THR63 4.4 25.8 1.0
N B:VAL64 4.4 20.1 1.0
N B:GLY65 4.5 17.1 1.0
CA B:GLY65 4.8 16.1 1.0
CA B:THR63 4.9 19.1 1.0
CB B:THR63 5.0 21.5 1.0

Reference:

B.Lee, K.I.White, M.A.Socolich, M.A.Klureza, R.Henning, V.Srajer, R.Ranganathan, D.Hekstra. Direct Visualization of Electric Field-Stimulated Ion Conduction in A Potassium Channel To Be Published.
Page generated: Mon Aug 12 23:08:43 2024

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