Potassium in PDB 8csu: Human Mitochondrial Small Subunit Assembly Intermediate (State C*)
Other elements in 8csu:
The structure of Human Mitochondrial Small Subunit Assembly Intermediate (State C*) also contains other interesting chemical elements:
Potassium Binding Sites:
The binding sites of Potassium atom in the Human Mitochondrial Small Subunit Assembly Intermediate (State C*)
(pdb code 8csu). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 5 binding sites of Potassium where determined in the
Human Mitochondrial Small Subunit Assembly Intermediate (State C*), PDB code: 8csu:
Jump to Potassium binding site number:
1;
2;
3;
4;
5;
Potassium binding site 1 out
of 5 in 8csu
Go back to
Potassium Binding Sites List in 8csu
Potassium binding site 1 out
of 5 in the Human Mitochondrial Small Subunit Assembly Intermediate (State C*)
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Human Mitochondrial Small Subunit Assembly Intermediate (State C*) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K1701
b:28.0
occ:1.00
|
O3'
|
A:C842
|
2.9
|
37.4
|
1.0
|
N3
|
A:C707
|
3.0
|
26.5
|
1.0
|
O2'
|
A:C842
|
3.0
|
37.4
|
1.0
|
O2
|
A:C702
|
3.1
|
37.4
|
1.0
|
O2
|
A:C708
|
3.5
|
27.0
|
1.0
|
C3'
|
A:C842
|
3.7
|
37.4
|
1.0
|
O2
|
A:C707
|
3.7
|
26.5
|
1.0
|
C2
|
A:C707
|
3.8
|
26.5
|
1.0
|
N4
|
A:C707
|
3.8
|
26.5
|
1.0
|
C2
|
A:C708
|
3.8
|
27.0
|
1.0
|
C4
|
A:C707
|
3.8
|
26.5
|
1.0
|
C4'
|
A:C842
|
3.9
|
37.4
|
1.0
|
C5'
|
A:G843
|
3.9
|
37.4
|
1.0
|
C2'
|
A:C842
|
3.9
|
37.4
|
1.0
|
OP1
|
A:G843
|
4.0
|
37.4
|
1.0
|
P
|
A:G843
|
4.0
|
37.4
|
1.0
|
N3
|
A:C708
|
4.3
|
27.0
|
1.0
|
N1
|
A:C708
|
4.3
|
27.0
|
1.0
|
C2
|
A:C702
|
4.3
|
37.4
|
1.0
|
O5'
|
A:G843
|
4.5
|
37.4
|
1.0
|
C1'
|
A:C708
|
4.5
|
27.0
|
1.0
|
N4
|
A:C706
|
4.6
|
37.4
|
1.0
|
C5'
|
A:C842
|
4.8
|
37.4
|
1.0
|
N2
|
A:G701
|
4.8
|
27.6
|
1.0
|
O4'
|
A:C842
|
4.9
|
37.4
|
1.0
|
N3
|
A:C702
|
4.9
|
37.4
|
1.0
|
C1'
|
A:C842
|
4.9
|
37.4
|
1.0
|
O4'
|
A:A703
|
5.0
|
37.4
|
1.0
|
|
Potassium binding site 2 out
of 5 in 8csu
Go back to
Potassium Binding Sites List in 8csu
Potassium binding site 2 out
of 5 in the Human Mitochondrial Small Subunit Assembly Intermediate (State C*)
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Human Mitochondrial Small Subunit Assembly Intermediate (State C*) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K1702
b:36.3
occ:1.00
|
O2'
|
A:G717
|
2.8
|
36.3
|
1.0
|
O3'
|
A:G717
|
2.9
|
36.3
|
1.0
|
O4'
|
A:G791
|
3.0
|
38.0
|
1.0
|
N7
|
A:G719
|
3.1
|
38.6
|
1.0
|
O6
|
A:G719
|
3.2
|
38.6
|
1.0
|
O5'
|
A:G791
|
3.4
|
38.0
|
1.0
|
N7
|
A:A718
|
3.4
|
40.0
|
1.0
|
C1'
|
A:G717
|
3.5
|
36.3
|
1.0
|
C2'
|
A:G717
|
3.5
|
36.3
|
1.0
|
OP2
|
A:A718
|
3.7
|
40.0
|
1.0
|
C5
|
A:G719
|
3.8
|
38.6
|
1.0
|
C6
|
A:G719
|
3.8
|
38.6
|
1.0
|
C3'
|
A:G717
|
3.8
|
36.3
|
1.0
|
N3
|
A:G717
|
3.8
|
36.3
|
1.0
|
C4'
|
A:G791
|
3.9
|
38.0
|
1.0
|
C8
|
A:A718
|
3.9
|
40.0
|
1.0
|
P
|
A:A718
|
4.0
|
40.0
|
1.0
|
C5'
|
A:G791
|
4.0
|
38.0
|
1.0
|
C1'
|
A:G791
|
4.0
|
38.0
|
1.0
|
C8
|
A:G719
|
4.2
|
38.6
|
1.0
|
C5
|
A:A718
|
4.3
|
40.0
|
1.0
|
C8
|
A:G791
|
4.4
|
38.0
|
1.0
|
MG
|
A:MG1711
|
4.4
|
37.1
|
1.0
|
N9
|
A:G717
|
4.4
|
36.3
|
1.0
|
O4'
|
A:G717
|
4.4
|
36.3
|
1.0
|
O4
|
A:U720
|
4.5
|
41.4
|
1.0
|
C4
|
A:G717
|
4.5
|
36.3
|
1.0
|
N9
|
A:G791
|
4.5
|
38.0
|
1.0
|
P
|
A:G791
|
4.6
|
38.0
|
1.0
|
OP2
|
A:G791
|
4.6
|
38.0
|
1.0
|
C4'
|
A:G717
|
4.6
|
36.3
|
1.0
|
N6
|
A:A718
|
4.7
|
40.0
|
1.0
|
O5'
|
A:A718
|
4.7
|
40.0
|
1.0
|
C6
|
A:A718
|
4.8
|
40.0
|
1.0
|
C2
|
A:G717
|
4.8
|
36.3
|
1.0
|
C4
|
A:U720
|
4.8
|
41.4
|
1.0
|
N2
|
A:G717
|
4.9
|
36.3
|
1.0
|
N9
|
A:A718
|
4.9
|
40.0
|
1.0
|
|
Potassium binding site 3 out
of 5 in 8csu
Go back to
Potassium Binding Sites List in 8csu
Potassium binding site 3 out
of 5 in the Human Mitochondrial Small Subunit Assembly Intermediate (State C*)
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Human Mitochondrial Small Subunit Assembly Intermediate (State C*) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K1703
b:55.9
occ:1.00
|
OP2
|
A:U1107
|
2.8
|
54.7
|
1.0
|
O2'
|
A:C1105
|
2.8
|
52.6
|
1.0
|
O2
|
A:C1105
|
2.9
|
52.6
|
1.0
|
O3'
|
A:U1592
|
3.2
|
42.1
|
1.0
|
O2'
|
A:U1592
|
3.5
|
42.1
|
1.0
|
C1'
|
A:C1105
|
3.5
|
52.6
|
1.0
|
C2'
|
A:C1105
|
3.7
|
52.6
|
1.0
|
C2
|
A:C1105
|
3.8
|
52.6
|
1.0
|
C4'
|
A:U1592
|
3.8
|
42.1
|
1.0
|
O3'
|
A:C1105
|
3.9
|
52.6
|
1.0
|
O5'
|
A:U1107
|
3.9
|
54.7
|
1.0
|
P
|
A:U1107
|
3.9
|
54.7
|
1.0
|
C3'
|
A:U1592
|
3.9
|
42.1
|
1.0
|
N1
|
A:C1105
|
4.1
|
52.6
|
1.0
|
OP1
|
A:U1593
|
4.2
|
47.8
|
1.0
|
N2
|
A:G1594
|
4.3
|
49.7
|
1.0
|
P
|
A:U1593
|
4.3
|
47.8
|
1.0
|
C2'
|
A:U1592
|
4.3
|
42.1
|
1.0
|
C5'
|
A:U1593
|
4.3
|
47.8
|
1.0
|
C3'
|
A:C1105
|
4.4
|
52.6
|
1.0
|
C5'
|
A:U1592
|
4.6
|
42.1
|
1.0
|
O4'
|
A:C1105
|
4.7
|
52.6
|
1.0
|
O5'
|
A:U1593
|
4.7
|
47.8
|
1.0
|
O4'
|
A:U1592
|
4.8
|
42.1
|
1.0
|
C3'
|
A:C1106
|
4.9
|
61.3
|
1.0
|
N3
|
A:C1105
|
4.9
|
52.6
|
1.0
|
O3'
|
A:C1106
|
4.9
|
61.3
|
1.0
|
OP1
|
A:U1107
|
5.0
|
54.7
|
1.0
|
|
Potassium binding site 4 out
of 5 in 8csu
Go back to
Potassium Binding Sites List in 8csu
Potassium binding site 4 out
of 5 in the Human Mitochondrial Small Subunit Assembly Intermediate (State C*)
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 4 of Human Mitochondrial Small Subunit Assembly Intermediate (State C*) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K1704
b:51.1
occ:1.00
|
O3'
|
A:C800
|
3.1
|
40.1
|
1.0
|
OP1
|
A:C806
|
3.2
|
62.6
|
1.0
|
OP1
|
A:A801
|
3.5
|
42.0
|
1.0
|
O2'
|
A:C805
|
3.7
|
68.0
|
1.0
|
O3'
|
A:C805
|
3.7
|
68.0
|
1.0
|
C4'
|
A:C800
|
3.9
|
40.1
|
1.0
|
P
|
A:A801
|
4.0
|
42.0
|
1.0
|
C3'
|
A:C800
|
4.0
|
40.1
|
1.0
|
MG
|
A:MG1716
|
4.1
|
34.0
|
1.0
|
P
|
A:C806
|
4.1
|
62.6
|
1.0
|
C5'
|
A:C800
|
4.3
|
40.1
|
1.0
|
O2'
|
A:C800
|
4.5
|
40.1
|
1.0
|
OP2
|
A:C804
|
4.6
|
68.8
|
1.0
|
C3'
|
A:C805
|
4.7
|
68.0
|
1.0
|
C2'
|
A:C805
|
4.8
|
68.0
|
1.0
|
C5'
|
A:A801
|
4.8
|
42.0
|
1.0
|
C5'
|
A:C806
|
4.8
|
62.6
|
1.0
|
O5'
|
A:A801
|
4.9
|
42.0
|
1.0
|
C2'
|
A:C800
|
4.9
|
40.1
|
1.0
|
O5'
|
A:C806
|
5.0
|
62.6
|
1.0
|
|
Potassium binding site 5 out
of 5 in 8csu
Go back to
Potassium Binding Sites List in 8csu
Potassium binding site 5 out
of 5 in the Human Mitochondrial Small Subunit Assembly Intermediate (State C*)
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 5 of Human Mitochondrial Small Subunit Assembly Intermediate (State C*) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K1705
b:39.7
occ:1.00
|
O2'
|
A:C835
|
2.7
|
37.7
|
1.0
|
O2
|
A:C835
|
2.8
|
37.7
|
1.0
|
O4
|
A:U838
|
2.8
|
27.1
|
1.0
|
N6
|
A:A839
|
3.4
|
27.7
|
1.0
|
O4
|
A:U850
|
3.5
|
30.8
|
1.0
|
C4
|
A:U838
|
3.8
|
27.1
|
1.0
|
OP2
|
A:A837
|
4.0
|
32.3
|
1.0
|
C2
|
A:C835
|
4.0
|
37.7
|
1.0
|
C2'
|
A:C835
|
4.0
|
37.7
|
1.0
|
C5
|
A:U838
|
4.0
|
27.1
|
1.0
|
N7
|
A:A837
|
4.3
|
32.3
|
1.0
|
C1'
|
A:C835
|
4.3
|
37.7
|
1.0
|
O3'
|
A:C835
|
4.4
|
37.7
|
1.0
|
C6
|
A:A839
|
4.6
|
27.7
|
1.0
|
N6
|
A:A852
|
4.7
|
30.8
|
1.0
|
C4
|
A:U850
|
4.7
|
30.8
|
1.0
|
N1
|
A:C835
|
4.7
|
37.7
|
1.0
|
C3'
|
A:C835
|
4.9
|
37.7
|
1.0
|
C8
|
A:A837
|
4.9
|
32.3
|
1.0
|
N3
|
A:C835
|
4.9
|
37.7
|
1.0
|
C5
|
A:A837
|
4.9
|
32.3
|
1.0
|
|
Reference:
N.J.Harper,
C.Burnside,
S.Klinge.
Principles of Mitoribosomal Small Subunit Assembly in Eukaryotes. Nature 2022.
ISSN: ESSN 1476-4687
PubMed: 36482135
DOI: 10.1038/S41586-022-05621-0
Page generated: Mon Aug 12 23:02:03 2024
|