Potassium in PDB 8cgi: Pentacycline TP038 Bound to the 30S Head

Other elements in 8cgi:

Potassium Binding Sites:

Potassium binding site 1 out of 10 in 8cgi

Potassium Binding Sites List in 8cgi

Potassium binding site 1 out of 10 in the Pentacycline TP038 Bound to the 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Pentacycline TP038 Bound to the 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1602 b:41.0 occ:1.00 OP2 A:G1361 2.8 33.5 1.0 O6 A:G976 2.8 33.6 1.0 O2 A:C1359 2.9 32.5 1.0 O2' A:C1359 3.0 27.7 1.0 N7 A:A1362 3.0 28.5 1.0 OP2 A:A1362 3.2 40.8 1.0 O A:HOH2055 3.4 54.2 1.0 C8 A:A1362 3.5 27.2 1.0 C2' A:C1359 3.5 27.7 1.0 O5' A:G1361 3.6 31.0 1.0 C1' A:C1359 3.6 27.1 1.0 C6 A:G976 3.7 27.4 1.0 P A:G1361 3.8 29.4 1.0 C2 A:C1359 4.0 27.4 1.0 C8 A:G1361 4.0 24.2 1.0 O A:HOH2054 4.2 26.0 1.0 N7 A:G1361 4.2 23.3 1.0 C5 A:A1362 4.3 27.7 1.0 N1 A:C1359 4.3 29.9 1.0 C3' A:G1361 4.4 28.1 1.0 P A:A1362 4.5 33.0 1.0 C5 A:G976 4.5 27.2 1.0 N1 A:G976 4.5 25.5 1.0 OP1 A:G1361 4.6 38.6 1.0 O5' A:A1362 4.6 32.4 1.0 O A:HOH2137 4.7 42.1 1.0 N7 A:G976 4.7 26.4 1.0 N6 A:A1362 4.8 28.2 1.0 O4' A:C1359 4.8 25.7 1.0 N9 A:A1362 4.8 27.7 1.0 N9 A:G1361 4.8 24.3 1.0 C5' A:G1361 4.9 28.3 1.0 O3' A:G1361 4.9 30.8 1.0

Potassium binding site 2 out of 10 in 8cgi

Potassium Binding Sites List in 8cgi

Potassium binding site 2 out of 10 in the Pentacycline TP038 Bound to the 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Pentacycline TP038 Bound to the 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1603 b:35.4 occ:1.00 O6 A:G971 2.7 29.0 1.0 O2 A:U1364 2.9 28.2 1.0 O2' A:U1364 3.0 29.0 1.0 O2' A:G1233 3.0 26.3 1.0 N3 A:A949 3.0 22.5 1.0 N3 A:G1233 3.1 23.8 1.0 N7 A:G971 3.1 25.3 1.0 C6 A:G971 3.4 25.4 1.0 C2' A:G1233 3.5 25.6 1.0 C2 A:A949 3.5 21.4 1.0 C5 A:G971 3.6 25.1 1.0 C1' A:G1233 3.7 24.6 1.0 N2 A:G1233 3.8 22.6 1.0 C2 A:G1233 3.9 22.8 1.0 C2 A:U1364 3.9 28.3 1.0 O4' A:C1234 4.0 27.5 1.0 C1' A:U1364 4.0 31.1 1.0 C4 A:G1233 4.0 22.6 1.0 C4 A:A949 4.1 21.1 1.0 C2' A:U1364 4.1 31.1 1.0 O3' A:U1364 4.2 27.9 1.0 C5' A:G1365 4.2 26.7 1.0 N9 A:G1233 4.3 23.4 1.0 C1' A:A949 4.3 22.4 1.0 C8 A:G971 4.4 25.6 1.0 N1 A:U1364 4.4 32.8 1.0 O2' A:A949 4.4 23.3 1.0 N9 A:A949 4.6 21.5 1.0 C1' A:C1234 4.7 26.0 1.0 N1 A:A949 4.7 21.6 1.0 N1 A:G971 4.7 24.3 1.0 C2' A:A949 4.8 23.6 1.0 C3' A:U1364 4.8 30.5 1.0 O4' A:G1233 4.9 26.9 1.0 C4 A:G971 4.9 24.7 1.0 N3 A:U1364 5.0 29.7 1.0 C3' A:G1233 5.0 26.6 1.0

Potassium binding site 3 out of 10 in 8cgi

Potassium Binding Sites List in 8cgi

Potassium binding site 3 out of 10 in the Pentacycline TP038 Bound to the 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Pentacycline TP038 Bound to the 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1604 b:60.8 occ:1.00 O6 A:G1074 2.7 53.3 1.0 O4 A:U1083 2.8 45.9 1.0 O4 A:U1073 2.8 54.3 1.0 O A:HOH2243 3.4 50.6 1.0 N6 A:A1082 3.5 49.2 1.0 C4 A:U1073 3.7 52.4 1.0 C6 A:G1074 3.7 52.0 1.0 C4 A:U1083 3.7 45.4 1.0 N3 A:U1083 3.8 46.9 1.0 N2 A:G1084 3.8 39.0 1.0 C5 A:U1073 4.0 55.1 1.0 N7 A:G1074 4.3 53.6 1.0 C5 A:G1074 4.4 52.1 1.0 C2 A:G1084 4.4 38.7 1.0 N6 A:A1102 4.5 53.0 1.0 O A:HOH2080 4.5 48.3 1.0 C6 A:A1082 4.5 48.7 1.0 O4 A:U1075 4.6 58.1 1.0 N1 A:G1084 4.6 41.4 1.0 N7 A:G1072 4.8 51.1 1.0 N1 A:G1074 4.8 47.6 1.0 N3 A:U1073 4.9 52.7 1.0

Potassium binding site 4 out of 10 in 8cgi

Potassium Binding Sites List in 8cgi

Potassium binding site 4 out of 10 in the Pentacycline TP038 Bound to the 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Pentacycline TP038 Bound to the 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1605 b:32.3 occ:1.00 O2' A:C1322 2.7 24.2 1.0 O2 A:C1322 2.8 23.2 1.0 O A:HOH2399 2.9 41.0 1.0 O2' A:A1319 2.9 33.3 1.0 N3 A:A1319 3.0 22.6 1.0 O A:HOH2358 3.2 25.0 1.0 O3' A:C1322 3.5 28.2 1.0 C2' A:C1322 3.7 25.1 1.0 C2 A:A1319 3.7 21.7 1.0 C1' A:C1322 3.7 23.3 1.0 C2 A:C1322 3.9 22.0 1.0 C1' A:A1319 3.9 27.6 1.0 O4' A:G1323 4.0 25.7 1.0 C4 A:A1319 4.0 24.2 1.0 O A:HOH1874 4.1 37.4 1.0 C2' A:A1319 4.1 31.8 1.0 O5' A:G1323 4.2 27.4 1.0 C8 A:G1323 4.2 23.6 1.0 C3' A:C1322 4.3 25.5 1.0 N1 A:C1322 4.3 22.9 1.0 O A:HOH1852 4.3 30.2 1.0 N9 A:A1319 4.4 23.3 1.0 O4' A:A978 4.4 21.5 1.0 C1' A:A978 4.4 21.7 1.0 N3 A:A978 4.4 22.0 1.0 C5' A:G1323 4.4 27.4 1.0 P A:G1323 4.6 27.4 1.0 OP2 A:U1321 4.6 27.9 1.0 C4 A:A978 4.8 21.3 1.0 N9 A:A978 4.8 21.8 1.0 C4' A:G1323 4.8 27.2 1.0 O3' A:A1319 4.8 31.0 1.0 OP2 A:G1323 4.9 30.5 1.0 N9 A:G1323 4.9 24.3 1.0 N7 A:G1323 4.9 25.6 1.0 O4' A:C1322 5.0 24.7 1.0 N3 A:C1322 5.0 22.1 1.0 C1' A:G1323 5.0 25.1 1.0

Potassium binding site 5 out of 10 in 8cgi

Potassium Binding Sites List in 8cgi

Potassium binding site 5 out of 10 in the Pentacycline TP038 Bound to the 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Pentacycline TP038 Bound to the 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1606 b:52.1 occ:1.00 OP2 A:C1303 2.6 36.1 1.0 O A:HOH1741 2.8 53.3 1.0 O6 A:G1304 2.8 31.0 1.0 N7 A:G1304 2.9 26.1 1.0 O6 A:G1305 3.0 34.4 1.0 C6 A:G1304 3.5 26.5 1.0 O A:HOH1931 3.5 53.7 1.0 O A:HOH2256 3.5 33.4 1.0 C5 A:G1304 3.5 27.1 1.0 C5 A:C1303 3.7 26.6 1.0 C6 A:G1305 3.8 29.0 1.0 P A:C1303 4.0 30.5 1.0 C8 A:G1304 4.1 26.9 1.0 C6 A:C1303 4.1 25.1 1.0 N1 A:G1305 4.3 29.0 1.0 O5' A:C1303 4.3 30.2 1.0 C4 A:C1303 4.5 26.6 1.0 OP2 A:U1301 4.5 38.2 1.0 N4 A:C1303 4.7 26.2 1.0 OP1 A:C1303 4.7 31.5 1.0 N1 A:G1304 4.9 26.7 1.0 C4 A:G1304 4.9 26.3 1.0 C5 A:G1305 4.9 29.8 1.0

Potassium binding site 6 out of 10 in 8cgi

Potassium Binding Sites List in 8cgi

Potassium binding site 6 out of 10 in the Pentacycline TP038 Bound to the 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Pentacycline TP038 Bound to the 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1637 b:40.3 occ:1.00 OP2 A:G944 2.8 28.6 1.0 OP2 A:U943 2.9 30.4 1.0 N7 A:G945 2.9 30.4 1.0 O6 A:G945 3.0 28.1 1.0 N7 A:G944 3.0 29.4 1.0 N7 A:G1337 3.4 28.8 1.0 C8 A:G944 3.5 28.4 1.0 C5 A:G945 3.6 29.4 1.0 C6 A:G945 3.6 26.0 1.0 O5' A:U943 3.7 28.2 1.0 P A:U943 3.7 27.4 1.0 C8 A:G1337 3.7 29.4 1.0 O A:HOH1919 3.8 33.0 1.0 C8 A:G945 4.1 29.2 1.0 C5 A:G1337 4.1 28.7 1.0 P A:G944 4.2 25.9 1.0 OP1 A:U943 4.2 32.8 1.0 C5 A:G944 4.3 29.6 1.0 O A:HOH1860 4.3 50.7 1.0 C3' A:U943 4.4 27.9 1.0 O5' A:G944 4.4 27.1 1.0 C6 A:U943 4.4 25.2 1.0 O A:HOH2170 4.5 29.2 1.0 C5 A:U943 4.5 26.9 1.0 N9 A:G1337 4.6 30.1 1.0 O3' A:U943 4.8 27.1 1.0 C4 A:G1337 4.8 27.9 1.0 C6 A:G1337 4.8 26.8 1.0 C5' A:U943 4.8 27.3 1.0 N9 A:G944 4.9 29.2 1.0 O6 A:G944 4.9 32.1 1.0 C4 A:G945 4.9 28.0 1.0 O6 A:G1337 4.9 27.3 1.0 N1 A:G945 5.0 26.2 1.0

Potassium binding site 7 out of 10 in 8cgi

Potassium Binding Sites List in 8cgi

Potassium binding site 7 out of 10 in the Pentacycline TP038 Bound to the 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Pentacycline TP038 Bound to the 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1638 b:39.7 occ:1.00 O2' A:U1224 2.8 26.1 1.0 O M:HOH320 2.9 47.4 1.0 OP2 A:C1322 2.9 30.0 1.0 O A:HOH2228 2.9 39.6 1.0 OP1 A:A1225 2.9 33.1 1.0 O3' A:U1224 3.0 26.4 1.0 O M:GLN100 3.2 28.9 1.0 O M:GLY99 3.5 35.8 1.0 P A:A1225 3.6 25.4 1.0 O M:HOH306 3.7 36.3 1.0 C5' A:A1225 3.8 27.9 1.0 C2' A:U1224 3.8 25.9 1.0 C M:GLN100 3.9 27.1 1.0 C3' A:U1224 4.0 25.3 1.0 C M:GLY99 4.1 30.6 1.0 P A:C1322 4.1 23.5 1.0 CA M:ARG101 4.2 29.4 1.0 O5' A:A1225 4.2 26.8 1.0 C1' A:U1224 4.3 24.6 1.0 C5' A:C1322 4.3 24.6 1.0 O M:HOH309 4.3 61.1 1.0 N M:ARG101 4.3 28.1 1.0 OP1 A:C1322 4.5 25.4 1.0 O5' A:C1322 4.7 24.7 1.0 N M:GLN100 4.7 28.1 1.0 CA M:GLY99 4.7 32.0 1.0 O2 A:U1224 4.8 28.7 1.0 N M:THR102 4.8 27.5 1.0 O A:HOH2437 4.9 54.6 1.0 C M:ARG101 4.9 27.1 1.0 CA M:GLN100 4.9 27.9 1.0 OP2 A:A1225 4.9 31.5 1.0

Potassium binding site 8 out of 10 in 8cgi

Potassium Binding Sites List in 8cgi

Potassium binding site 8 out of 10 in the Pentacycline TP038 Bound to the 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Pentacycline TP038 Bound to the 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1639 b:32.0 occ:1.00 O A:HOH2412 2.7 27.6 1.0 OP1 A:C979 2.7 22.8 1.0 N7 A:G1222 2.8 19.7 1.0 O A:HOH1900 2.9 28.1 1.0 O A:HOH2245 3.1 20.7 1.0 N4 A:C1322 3.1 21.9 1.0 O3' A:A978 3.4 21.4 1.0 P A:C979 3.6 19.5 1.0 C8 A:G1222 3.7 18.7 1.0 C5' A:C979 3.7 22.0 1.0 C5 A:G1222 3.8 19.2 1.0 O6 A:G1222 3.9 21.1 1.0 MG A:MG1623 3.9 17.9 1.0 O A:HOH1957 4.1 19.8 1.0 C4 A:C1322 4.1 22.0 1.0 N4 A:C1223 4.1 20.3 1.0 OP2 A:G1222 4.2 24.0 1.0 O5' A:C979 4.2 21.1 1.0 C6 A:G1222 4.2 18.6 1.0 O A:HOH2317 4.3 24.6 1.0 N7 A:G1221 4.4 18.6 1.0 O2' A:A978 4.4 21.0 1.0 N3 A:C1322 4.6 22.1 1.0 C5 A:C1223 4.7 21.2 1.0 C3' A:A978 4.7 22.5 1.0 C4 A:C1223 4.8 20.7 1.0 C5 A:G1221 4.8 18.7 1.0 C8 A:G1221 4.9 19.1 1.0 OP2 A:C979 4.9 20.5 1.0 N9 A:G1222 5.0 18.5 1.0 OP2 A:G1221 5.0 27.3 1.0

Potassium binding site 9 out of 10 in 8cgi

Potassium Binding Sites List in 8cgi

Potassium binding site 9 out of 10 in the Pentacycline TP038 Bound to the 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Pentacycline TP038 Bound to the 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1640 b:26.8 occ:1.00 O4 A:U1199 2.7 21.9 1.0 O A:HOH1985 2.8 25.4 1.0 O6 A:G1058 2.8 22.5 1.0 O A:HOH1755 2.8 33.2 1.0 O A:HOH1814 2.9 29.0 1.0 O6 A:G1198 3.0 24.8 1.0 O A:HOH2452 3.4 45.1 1.0 N4 A:C1059 3.5 22.6 1.0 N2 A:G1053 3.6 21.7 1.0 C4 A:U1199 3.6 20.9 1.0 N3 A:U1199 3.8 21.0 1.0 C6 A:G1058 3.9 21.2 1.0 O A:HOH2217 4.0 21.0 1.0 C6 A:G1198 4.0 21.8 1.0 C2 A:G1053 4.0 21.4 1.0 O A:HOH1947 4.1 42.3 1.0 OP2 A:G1057 4.1 28.9 1.0 N7 A:G1058 4.2 22.0 1.0 N3 A:G1053 4.3 22.0 1.0 O A:HOH2373 4.4 36.2 1.0 C4 A:C1059 4.4 23.3 1.0 O A:HOH2346 4.4 26.3 1.0 C5 A:G1058 4.4 22.4 1.0 N1 A:G1198 4.8 22.0 1.0 N3 A:C1059 4.8 23.6 1.0 O A:HOH2039 4.8 20.2 1.0 N1 A:G1053 4.9 23.2 1.0 C5 A:G1198 4.9 23.6 1.0

Potassium binding site 10 out of 10 in 8cgi

Potassium Binding Sites List in 8cgi

Potassium binding site 10 out of 10 in the Pentacycline TP038 Bound to the 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Pentacycline TP038 Bound to the 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1641 b:38.9 occ:1.00 O6 A:G1242 2.7 35.8 1.0 O6 A:G1241 2.8 36.3 1.0 O4 A:U1295 2.9 34.4 1.0 O A:HOH2220 2.9 38.9 1.0 O6 A:G1294 2.9 35.0 1.0 C6 A:G1241 3.6 33.6 1.0 N4 A:C1243 3.7 30.5 1.0 C4 A:U1295 3.7 34.5 1.0 N3 A:U1295 3.8 34.5 1.0 C6 A:G1242 3.8 31.1 1.0 C6 A:G1294 4.0 34.2 1.0 N4 A:C1296 4.2 31.8 1.0 N7 A:G1242 4.3 31.7 1.0 C5 A:G1241 4.3 34.5 1.0 N1 A:G1241 4.4 31.8 1.0 C5 A:G1242 4.4 32.4 1.0 O A:HOH1839 4.4 57.3 1.0 N7 A:G1241 4.6 34.9 1.0 C4 A:C1243 4.6 31.4 1.0 N1 A:G1294 4.8 35.0 1.0 C5 A:G1294 4.8 37.7 1.0 N1 A:G1242 4.9 32.1 1.0 C4 A:C1296 5.0 32.5 1.0 N3 A:C1243 5.0 33.5 1.0

Reference: