Potassium in PDB 8cf1: Tetracycline Bound to the 30S Head

The structure of Tetracycline Bound to the 30S Head also contains other interesting chemical elements:

Magnesium

(Mg)

31 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Potassium atom in the Tetracycline Bound to the 30S Head (pdb code 8cf1). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 12 binding sites of Potassium where determined in the Tetracycline Bound to the 30S Head, PDB code: 8cf1:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 12 in the Tetracycline Bound to the 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Tetracycline Bound to the 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1632 b:22.9 occ:1.00 O4 A:U1052 2.6 21.1 1.0 O6 A:G1206 2.6 19.4 1.0 O2 A:C1200 2.7 17.9 1.0 O A:HOH1983 2.7 23.2 1.0 O6 A:2MG1207 3.0 21.2 1.0 C2 A:C1200 3.6 16.6 1.0 N3 A:U1205 3.6 19.2 1.0 N4 A:C1051 3.6 20.7 1.0 C4 A:U1052 3.6 19.2 1.0 C6 A:G1206 3.7 18.4 1.0 C6 A:2MG1207 3.8 20.6 1.0 O4 A:U1205 3.8 19.3 1.0 N3 A:U1052 3.8 19.3 1.0 N7 A:G1206 3.9 19.3 1.0 C4 A:U1205 3.9 19.0 1.0 N3 A:C1200 4.1 15.9 1.0 C5 A:G1206 4.2 18.5 1.0 O2' A:C1200 4.2 21.2 1.0 C2 A:U1205 4.4 18.7 1.0 N1 A:2MG1207 4.5 20.3 1.0 N6 A:A1055 4.5 17.2 1.0 N1 A:C1200 4.5 17.6 1.0 O2 A:U1205 4.6 19.5 1.0 C4 A:C1051 4.6 22.1 1.0 C5 A:2MG1207 4.6 21.4 1.0 C1' A:C1200 4.7 19.0 1.0 N3 A:C1051 4.9 23.1 1.0 N1 A:G1206 4.9 17.6 1.0 N7 A:2MG1207 4.9 22.0 1.0 C5 A:U1052 4.9 20.3 1.0 C5 A:U1205 5.0 19.2 1.0

Potassium binding site 2 out of 12 in the Tetracycline Bound to the 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Tetracycline Bound to the 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1633 b:22.2 occ:1.00 O2 A:C1322 2.8 16.3 1.0 O2' A:C1322 2.8 17.2 1.0 N3 A:A1319 3.0 14.3 1.0 O2' A:A1319 3.0 20.1 1.0 O A:HOH2209 3.1 18.2 1.0 O3' A:C1322 3.5 19.2 1.0 C2 A:A1319 3.7 13.8 1.0 C1' A:C1322 3.7 17.1 1.0 C2' A:C1322 3.7 17.6 1.0 C2 A:C1322 3.9 15.7 1.0 O4' A:G1323 3.9 17.4 1.0 C1' A:A1319 4.0 17.2 1.0 C4 A:A1319 4.0 13.8 1.0 C2' A:A1319 4.1 18.9 1.0 O5' A:G1323 4.1 18.0 1.0 O A:HOH1763 4.1 27.4 1.0 C8 A:G1323 4.2 15.8 1.0 N1 A:C1322 4.3 16.1 1.0 C3' A:C1322 4.3 17.4 1.0 C5' A:G1323 4.3 18.0 1.0 O A:HOH1876 4.3 22.2 1.0 O4' A:A978 4.4 12.4 1.0 N9 A:A1319 4.4 14.9 1.0 C1' A:A978 4.4 12.1 1.0 N3 A:A978 4.4 11.9 1.0 P A:G1323 4.5 19.3 1.0 OP2 A:U1321 4.7 19.9 1.0 C4' A:G1323 4.7 18.0 1.0 C4 A:A978 4.8 11.8 1.0 N9 A:A978 4.8 12.1 1.0 N9 A:G1323 4.9 15.9 1.0 OP2 A:G1323 4.9 21.7 1.0 O4' A:C1322 4.9 18.1 1.0 N7 A:G1323 4.9 15.5 1.0 C1' A:G1323 4.9 16.7 1.0 O3' A:A1319 5.0 21.7 1.0 N1 A:A1319 5.0 13.7 1.0

Potassium binding site 3 out of 12 in the Tetracycline Bound to the 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Tetracycline Bound to the 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1634 b:36.8 occ:1.00 O4 A:U1073 2.6 33.5 1.0 O4 A:U1083 2.9 31.7 1.0 O A:HOH1939 2.9 37.4 1.0 O A:HOH2226 2.9 36.6 1.0 O6 A:G1074 3.0 30.7 1.0 C4 A:U1073 3.5 31.1 1.0 N6 A:A1082 3.7 32.2 1.0 N2 A:G1084 3.7 22.6 1.0 C4 A:U1083 3.8 29.0 1.0 C5 A:U1073 3.9 33.3 1.0 N3 A:U1083 3.9 28.5 1.0 C6 A:G1074 4.0 28.7 1.0 O A:HOH1716 4.1 32.9 1.0 O A:HOH1995 4.2 26.0 1.0 C2 A:G1084 4.3 22.0 1.0 N7 A:G1074 4.3 30.3 1.0 N6 A:A1102 4.4 31.1 1.0 C5 A:G1074 4.5 29.5 1.0 N1 A:G1084 4.5 23.6 1.0 N7 A:G1072 4.7 29.9 1.0 N3 A:U1073 4.7 31.1 1.0 C6 A:A1082 4.7 31.5 1.0 O4 A:U1075 4.8 36.8 1.0

Potassium binding site 4 out of 12 in the Tetracycline Bound to the 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Tetracycline Bound to the 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1635 b:34.3 occ:1.00 OP2 A:C1303 2.6 25.3 1.0 O6 A:G1304 2.7 20.5 1.0 O6 A:G1305 2.9 23.9 1.0 N7 A:G1304 3.0 19.9 1.0 O A:HOH2044 3.3 24.0 1.0 C6 A:G1304 3.5 18.3 1.0 C5 A:G1304 3.6 18.0 1.0 C6 A:G1305 3.8 20.8 1.0 C5 A:C1303 3.8 17.1 1.0 P A:C1303 4.0 23.1 1.0 N1 A:G1305 4.2 20.0 1.0 C8 A:G1304 4.2 18.1 1.0 C6 A:C1303 4.3 17.2 1.0 O5' A:C1303 4.4 21.8 1.0 C4 A:C1303 4.6 16.7 1.0 OP1 A:C1303 4.7 24.4 1.0 N4 A:C1303 4.8 16.8 1.0 OP2 A:U1301 4.8 32.9 1.0 N1 A:G1304 4.8 17.8 1.0 C5 A:G1305 4.9 19.6 1.0 C4 A:G1304 4.9 17.8 1.0

Potassium binding site 5 out of 12 in the Tetracycline Bound to the 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Tetracycline Bound to the 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1636 b:33.2 occ:1.00 N7 A:G1233 2.8 18.3 1.0 O A:HOH2193 2.8 26.0 1.0 O A:HOH1890 2.9 28.2 1.0 OP1 A:G944 2.9 21.3 1.0 O3' A:U943 3.3 19.9 1.0 O4 A:U1232 3.6 18.6 1.0 P A:G944 3.7 20.3 1.0 O A:HOH1755 3.7 25.4 1.0 O6 A:G1233 3.7 15.8 1.0 C8 A:G1233 3.8 17.1 1.0 C5 A:G1233 3.8 16.6 1.0 C4 A:U1232 3.9 16.8 1.0 O A:HOH2071 3.9 24.8 1.0 C5 A:U1232 3.9 18.4 1.0 O A:HOH2256 4.0 32.9 1.0 O A:HOH2203 4.1 25.4 1.0 C6 A:G1233 4.1 15.4 1.0 MG A:MG1619 4.4 22.1 1.0 C3' A:U943 4.6 20.6 1.0 O2' A:U943 4.7 21.2 1.0 O5' A:G944 4.7 20.5 1.0 C5' A:G944 4.7 21.8 1.0 N3 A:U1232 4.8 17.2 1.0 OP2 A:G944 4.8 21.5 1.0 C6 A:U1232 4.8 17.9 1.0 N4 A:C1234 4.9 15.2 1.0 C4' A:U943 4.9 20.3 1.0 N9 A:G1233 5.0 17.4 1.0

Potassium binding site 6 out of 12 in the Tetracycline Bound to the 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Tetracycline Bound to the 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1637 b:29.0 occ:1.00 OP2 A:G944 2.8 21.5 1.0 N7 A:G945 2.8 21.9 1.0 O6 A:G945 2.9 20.9 1.0 OP2 A:U943 2.9 22.6 1.0 N7 A:G944 3.0 22.5 1.0 N7 A:G1337 3.5 21.6 1.0 C5 A:G945 3.5 20.4 1.0 C8 A:G944 3.5 22.1 1.0 C6 A:G945 3.5 19.9 1.0 O5' A:U943 3.7 21.3 1.0 P A:U943 3.8 20.5 1.0 C8 A:G1337 3.8 21.7 1.0 O A:HOH1834 3.8 22.1 1.0 C8 A:G945 4.0 22.4 1.0 P A:G944 4.1 20.3 1.0 C5 A:G1337 4.2 21.0 1.0 OP1 A:U943 4.2 21.2 1.0 C5 A:G944 4.3 22.8 1.0 O5' A:G944 4.4 20.5 1.0 O A:HOH1970 4.4 18.9 1.0 C3' A:U943 4.4 20.6 1.0 C6 A:U943 4.4 20.3 1.0 C5 A:U943 4.5 21.1 1.0 N9 A:G1337 4.6 23.8 1.0 O3' A:U943 4.7 19.9 1.0 C4 A:G1337 4.8 21.9 1.0 C6 A:G1337 4.8 19.6 1.0 C4 A:G945 4.8 21.7 1.0 N9 A:G944 4.9 22.6 1.0 C5' A:U943 4.9 21.0 1.0 N1 A:G945 4.9 18.9 1.0 O6 A:G944 4.9 24.8 1.0 O6 A:G1337 5.0 19.2 1.0

Potassium binding site 7 out of 12 in the Tetracycline Bound to the 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Tetracycline Bound to the 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1638 b:25.7 occ:1.00 O6 A:G971 2.7 20.1 1.0 O2 A:U1364 3.0 22.5 1.0 O2' A:U1364 3.0 22.4 1.0 O2' A:G1233 3.0 19.2 1.0 N3 A:A949 3.0 15.0 1.0 N3 A:G1233 3.1 17.0 1.0 N7 A:G971 3.1 19.3 1.0 C6 A:G971 3.4 18.1 1.0 C2 A:A949 3.5 14.1 1.0 C2' A:G1233 3.5 18.6 1.0 C5 A:G971 3.5 18.7 1.0 C1' A:G1233 3.7 17.4 1.0 N2 A:G1233 3.8 15.3 1.0 C2 A:G1233 3.9 15.5 1.0 C2 A:U1364 3.9 21.3 1.0 O4' A:C1234 4.0 16.8 1.0 C4 A:G1233 4.0 16.3 1.0 C1' A:U1364 4.1 22.1 1.0 C2' A:U1364 4.1 22.1 1.0 C4 A:A949 4.1 13.8 1.0 O3' A:U1364 4.2 20.4 1.0 C5' A:G1365 4.2 17.3 1.0 N9 A:G1233 4.3 17.4 1.0 C8 A:G971 4.3 18.9 1.0 C1' A:A949 4.4 14.6 1.0 N1 A:U1364 4.5 22.9 1.0 O2' A:A949 4.6 15.1 1.0 N9 A:A949 4.6 13.4 1.0 N1 A:G971 4.7 17.9 1.0 N1 A:A949 4.7 13.1 1.0 C1' A:C1234 4.7 16.3 1.0 C3' A:U1364 4.8 21.6 1.0 C2' A:A949 4.8 15.1 1.0 C4 A:G971 4.9 18.6 1.0 O4' A:G1233 4.9 18.6 1.0 N3 A:U1364 5.0 22.3 1.0 O5' A:G1365 5.0 18.5 1.0

Potassium binding site 8 out of 12 in the Tetracycline Bound to the 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Tetracycline Bound to the 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1639 b:27.5 occ:1.00 O2' A:U1224 2.8 20.0 1.0 OP2 A:C1322 2.9 20.3 1.0 OP1 A:A1225 3.0 23.4 1.0 O3' A:U1224 3.0 19.8 1.0 O M:GLN100 3.2 19.8 1.0 P A:A1225 3.6 19.0 1.0 O M:GLY99 3.6 24.8 1.0 C5' A:A1225 3.7 18.4 1.0 O M:HOH302 3.8 26.8 1.0 C2' A:U1224 3.9 18.5 1.0 C M:GLN100 3.9 20.6 1.0 C3' A:U1224 4.0 18.4 1.0 O5' A:A1225 4.1 18.8 1.0 P A:C1322 4.2 17.1 1.0 CA M:ARG101 4.2 23.2 1.0 C M:GLY99 4.2 23.8 1.0 C1' A:U1224 4.3 17.3 1.0 N M:ARG101 4.3 22.3 1.0 C5' A:C1322 4.4 17.1 1.0 OP1 A:C1322 4.5 19.0 1.0 O5' A:C1322 4.7 17.2 1.0 N M:GLN100 4.8 22.1 1.0 N M:THR102 4.8 20.8 1.0 C M:ARG101 4.8 22.3 1.0 O2 A:U1224 4.9 20.0 1.0 CA M:GLY99 4.9 23.1 1.0 CA M:GLN100 4.9 22.4 1.0 OP2 A:A1225 4.9 20.3 1.0

Potassium binding site 9 out of 12 in the Tetracycline Bound to the 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Tetracycline Bound to the 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1640 b:39.0 occ:1.00 O6 A:G925 2.6 33.9 1.0 O A:HOH2134 2.6 37.1 1.0 O4 A:U1390 2.8 33.5 1.0 O6 A:G927 2.9 39.8 1.0 O4 A:U1391 3.1 42.5 1.0 O A:HOH2076 3.2 48.1 1.0 N4 A:C924 3.4 24.9 1.0 C6 A:G925 3.6 34.0 1.0 N3 A:U1391 3.7 39.6 1.0 C4 A:U1390 3.7 34.3 1.0 C4 A:U1391 3.8 39.6 1.0 O A:HOH2018 3.8 43.6 1.0 C6 A:G927 3.9 35.9 1.0 N3 A:U1390 4.0 32.6 1.0 N7 A:G925 4.1 35.8 1.0 C4 A:C924 4.1 26.9 1.0 C5 A:G925 4.2 34.3 1.0 N7 A:G927 4.5 35.6 1.0 C5 A:G927 4.6 35.3 1.0 C5 A:C924 4.6 27.9 1.0 O6 A:G1392 4.8 37.7 1.0 O6 A:G928 4.8 35.2 1.0 N1 A:G925 4.8 33.4 1.0 C2 A:U1391 4.9 39.2 1.0 N4 A:C1389 4.9 29.1 1.0 N3 A:C924 5.0 26.0 1.0

Potassium binding site 10 out of 12 in the Tetracycline Bound to the 30S Head


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Tetracycline Bound to the 30S Head within 5.0Å range: probe atom residue distance (Å) B Occ A:K1641 b:18.4 occ:1.00 O A:HOH2094 2.6 18.3 1.0 O6 A:G1058 2.7 13.7 1.0 O4 A:U1199 2.7 15.0 1.0 O A:HOH1873 2.7 21.9 1.0 O A:HOH1969 2.9 21.4 1.0 O6 A:G1198 3.0 15.2 1.0 N4 A:C1059 3.4 14.5 1.0 N2 A:G1053 3.5 13.7 1.0 C4 A:U1199 3.6 13.5 1.0 O A:HOH2270 3.6 39.0 1.0 C6 A:G1058 3.8 13.3 1.0 N3 A:U1199 3.8 13.2 1.0 O A:HOH1945 4.0 14.4 1.0 C2 A:G1053 4.0 13.7 1.0 C6 A:G1198 4.0 14.3 1.0 O A:HOH1864 4.0 31.4 1.0 N7 A:G1058 4.2 14.6 1.0 OP2 A:G1057 4.2 20.7 1.0 N3 A:G1053 4.3 13.6 1.0 C4 A:C1059 4.3 15.0 1.0 C5 A:G1058 4.4 13.8 1.0 O A:HOH2141 4.4 17.2 1.0 O A:HOH2240 4.5 34.1 1.0 N1 A:G1198 4.7 14.6 1.0 N3 A:C1059 4.7 15.0 1.0 N1 A:G1053 4.8 14.2 1.0 O A:HOH2032 4.9 15.5 1.0 C5 A:G1198 4.9 14.7 1.0 N1 A:G1058 5.0 13.3 1.0 C5 A:U1199 5.0 14.0 1.0 N7 A:G1057 5.0 14.6 1.0

H.Paternoga, C.Crowe-Mcauliffe, L.V.Bock, T.O.Koller, M.Morici, B.Beckert, A.G.Myasnikov, H.Grubmueller, J.Novacek, D.N.Wilson. Structural Conservation of Antibiotic Interaction with Ribosomes To Be Published.