Potassium in PDB 8cep: ROUND2 30S Head (No Antibiotic)

The structure of ROUND2 30S Head (No Antibiotic) also contains other interesting chemical elements:

Magnesium

(Mg)

54 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 25;

Binding sites:

The binding sites of Potassium atom in the ROUND2 30S Head (No Antibiotic) (pdb code 8cep). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 25 binding sites of Potassium where determined in the ROUND2 30S Head (No Antibiotic), PDB code: 8cep:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 25 in the ROUND2 30S Head (No Antibiotic)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of ROUND2 30S Head (No Antibiotic) within 5.0Å range: probe atom residue distance (Å) B Occ A:K1601 b:37.5 occ:1.00 O6 A:G645 2.6 34.2 1.0 O A:HOH2418 2.8 35.2 1.0 O4 A:U644 2.9 31.9 1.0 O A:HOH2563 2.9 32.6 1.0 O A:HOH2504 2.9 31.8 1.0 O4 A:U594 2.9 36.1 1.0 C6 A:G645 3.6 32.4 1.0 C4 A:U644 3.7 28.5 1.0 C4 A:U594 3.8 36.4 1.0 N3 A:U594 3.9 35.3 1.0 MG A:MG1620 3.9 34.2 1.0 O A:HOH3358 3.9 35.8 1.0 C2 A:A595 3.9 37.4 1.0 N1 A:A595 3.9 37.2 1.0 N7 A:G645 4.0 32.8 1.0 C5 A:U644 4.1 29.2 1.0 C5 A:G645 4.2 32.9 1.0 O A:HOH2914 4.3 33.0 1.0 O4 A:U593 4.3 39.2 1.0 N4 A:C643 4.4 25.3 1.0 N6 A:A596 4.4 34.3 1.0 O A:HOH2696 4.5 42.2 1.0 C5 A:C643 4.7 25.5 1.0 N1 A:G645 4.8 31.8 1.0 C4 A:C643 4.8 25.3 1.0 N3 A:A595 4.8 36.9 1.0 N3 A:U644 4.8 28.5 1.0 O6 A:G646 4.9 39.0 1.0 C6 A:A595 4.9 36.0 1.0

Potassium binding site 2 out of 25 in the ROUND2 30S Head (No Antibiotic)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of ROUND2 30S Head (No Antibiotic) within 5.0Å range: probe atom residue distance (Å) B Occ A:K1602 b:33.8 occ:1.00 O A:HOH2118 2.7 41.1 1.0 N7 A:A583 2.8 25.9 1.0 O2 A:C758 2.8 23.6 1.0 O6 A:G584 2.9 22.7 1.0 N3 A:C758 3.0 20.9 1.0 C2 A:C758 3.2 21.1 1.0 N7 A:G584 3.5 22.5 1.0 C6 A:G584 3.5 20.4 1.0 C5 A:C582 3.5 24.4 1.0 OP2 A:C582 3.6 33.7 1.0 C8 A:A583 3.6 24.8 1.0 C5 A:G584 3.7 21.9 1.0 OP2 A:A583 3.8 39.0 1.0 C6 A:C582 3.9 25.0 1.0 C5 A:A583 4.0 24.7 1.0 C4 A:C758 4.1 19.0 1.0 C4 A:C582 4.2 23.2 1.0 N6 A:A583 4.3 24.2 1.0 O5' A:C582 4.3 30.6 1.0 O4 A:U757 4.4 19.5 1.0 N4 A:C758 4.4 18.4 1.0 N4 A:C582 4.5 22.6 1.0 N1 A:C758 4.5 20.3 1.0 C8 A:G584 4.6 23.3 1.0 P A:C582 4.6 30.9 1.0 C6 A:A583 4.6 24.4 1.0 N1 A:G584 4.6 19.3 1.0 N3 A:U757 4.7 18.1 1.0 N1 A:C582 4.8 25.9 1.0 O A:HOH2869 4.8 44.9 1.0 N9 A:A583 4.9 25.9 1.0 C4 A:G584 4.9 22.1 1.0 C3' A:C582 4.9 29.6 1.0 N3 A:C582 5.0 25.4 1.0 C4 A:U757 5.0 18.5 1.0 P A:A583 5.0 36.9 1.0

Potassium binding site 3 out of 25 in the ROUND2 30S Head (No Antibiotic)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of ROUND2 30S Head (No Antibiotic) within 5.0Å range: probe atom residue distance (Å) B Occ A:K1644 b:25.8 occ:1.00 OP1 A:A1508 2.6 23.8 1.0 O A:HOH2423 2.6 34.3 1.0 OP1 A:C1521 2.6 24.5 1.0 O A:HOH3271 2.8 35.3 1.0 O A:HOH2680 2.9 19.7 1.0 OP1 A:A1500 2.9 21.6 1.0 O A:HOH3223 2.9 34.0 1.0 O3' A:A1499 3.2 22.6 1.0 P A:C1521 3.6 24.7 1.0 P A:A1500 3.6 20.6 1.0 MG A:MG1643 3.7 20.2 1.0 P A:A1508 3.8 22.5 1.0 OP2 A:C1521 3.8 25.4 1.0 O A:HOH1946 4.1 33.4 1.0 OP2 A:A1508 4.2 25.6 1.0 C5' A:A1500 4.2 22.6 1.0 O A:HOH2299 4.3 23.4 1.0 O5' A:A1508 4.3 23.8 1.0 C3' A:A1499 4.4 23.2 1.0 O5' A:A1500 4.5 21.8 1.0 O2' A:A1499 4.5 25.3 1.0 O3' A:C1520 4.5 24.9 1.0 C5' A:A1508 4.7 23.9 1.0 C4' A:A1499 4.7 24.2 1.0 O5' A:C1521 4.9 23.4 1.0 OP2 A:A1500 5.0 21.4 1.0 OP1 A:G1505 5.0 20.8 1.0

Potassium binding site 4 out of 25 in the ROUND2 30S Head (No Antibiotic)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of ROUND2 30S Head (No Antibiotic) within 5.0Å range: probe atom residue distance (Å) B Occ A:K1645 b:27.9 occ:1.00 O6 A:G326 2.7 21.3 1.0 O A:HOH3297 2.8 28.2 1.0 OP2 A:G107 2.8 22.3 1.0 O2' A:G324 2.9 22.1 1.0 N7 A:A325 3.0 19.9 1.0 OP1 A:G107 3.4 22.7 1.0 C6 A:G326 3.6 17.8 1.0 C8 A:A325 3.6 19.8 1.0 P A:G107 3.6 19.8 1.0 O A:HOH2690 3.8 21.7 1.0 O3' A:G324 4.1 26.1 1.0 K A:K1646 4.1 29.9 1.0 C5 A:A325 4.1 18.1 1.0 N7 A:G326 4.1 17.7 1.0 C5 A:G326 4.2 17.7 1.0 C2' A:G324 4.2 21.8 1.0 N6 A:A325 4.5 17.5 1.0 C3' A:G324 4.6 22.6 1.0 N1 A:G326 4.6 17.0 1.0 O3' A:C106 4.6 21.2 1.0 O A:HOH1870 4.7 30.2 1.0 C6 A:A325 4.7 18.1 1.0 C4' A:G324 4.8 21.6 1.0 O5' A:G107 4.9 20.0 1.0 N9 A:A325 4.9 20.2 1.0

Potassium binding site 5 out of 25 in the ROUND2 30S Head (No Antibiotic)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of ROUND2 30S Head (No Antibiotic) within 5.0Å range: probe atom residue distance (Å) B Occ A:K1646 b:29.9 occ:1.00 O6 A:G326 2.8 21.3 1.0 O A:HOH1870 2.8 30.2 1.0 OP2 A:G108 2.8 20.7 1.0 OP2 A:G107 2.9 22.3 1.0 N7 A:G108 3.0 20.6 1.0 O5' A:G107 3.3 20.0 1.0 N1 A:A109 3.4 14.0 1.0 C8 A:G108 3.6 18.8 1.0 P A:G107 3.6 19.8 1.0 C2 A:A109 3.6 13.6 1.0 O A:HOH3297 3.6 28.2 1.0 C6 A:G326 3.7 17.8 1.0 N1 A:G326 3.8 17.0 1.0 C8 A:G107 3.9 16.6 1.0 NH2 T:ARG10 4.0 22.0 1.0 N7 A:G107 4.1 15.9 1.0 K A:K1645 4.1 27.9 1.0 P A:G108 4.1 17.4 1.0 O A:HOH2690 4.2 21.7 1.0 OP1 A:G107 4.2 22.7 1.0 C5 A:G108 4.2 20.0 1.0 C3' A:G107 4.2 17.7 1.0 C6 A:A109 4.4 13.8 1.0 O5' A:G108 4.5 17.7 1.0 C5' A:G107 4.5 18.9 1.0 O6 A:G108 4.6 19.7 1.0 O3' A:G107 4.6 18.5 1.0 CZ T:ARG10 4.6 21.4 1.0 N3 A:A109 4.7 14.3 1.0 N9 A:G107 4.8 16.7 1.0 N6 A:A109 4.8 14.6 1.0 C6 A:G108 4.9 20.0 1.0 C4' A:G107 4.9 18.2 1.0 N9 A:G108 4.9 18.7 1.0 C5 A:G107 5.0 16.5 1.0

Potassium binding site 6 out of 25 in the ROUND2 30S Head (No Antibiotic)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of ROUND2 30S Head (No Antibiotic) within 5.0Å range: probe atom residue distance (Å) B Occ A:K1647 b:40.2 occ:1.00 OP2 A:A802 2.6 33.7 1.0 O A:HOH3316 2.7 41.5 1.0 N1 A:A780 2.8 22.4 1.0 O6 A:G803 3.0 23.1 1.0 N2 A:G776 3.1 27.1 1.0 OP2 A:U801 3.4 34.3 1.0 C2 A:A780 3.4 22.7 1.0 O5' A:U801 3.6 32.7 1.0 N4 A:C779 3.8 21.3 1.0 C6 A:G803 3.9 19.7 1.0 C6 A:A780 3.9 20.6 1.0 C2 A:G776 4.0 27.2 1.0 P A:A802 4.0 30.7 1.0 P A:U801 4.1 32.4 1.0 N6 A:A780 4.1 20.4 1.0 C3' A:U801 4.2 30.9 1.0 O3' A:U801 4.5 31.9 1.0 C5 A:G803 4.5 19.5 1.0 O A:HOH2724 4.6 31.4 1.0 N7 A:G803 4.6 18.8 1.0 C5' A:U801 4.7 31.6 1.0 N1 A:G776 4.7 27.5 1.0 C6 A:U801 4.7 25.9 1.0 N3 A:A780 4.7 22.0 1.0 N3 A:G776 4.7 26.9 1.0 O A:HOH1730 4.7 45.6 1.0 N1 A:G803 4.8 19.4 1.0 OP1 A:U801 4.8 37.6 1.0 O5' A:A802 4.9 29.1 1.0 N7 A:A802 4.9 20.6 1.0 C4 A:C779 5.0 21.0 1.0 O A:HOH3145 5.0 38.8 1.0 C4' A:U801 5.0 30.9 1.0 C5 A:U801 5.0 25.4 1.0

Potassium binding site 7 out of 25 in the ROUND2 30S Head (No Antibiotic)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of ROUND2 30S Head (No Antibiotic) within 5.0Å range: probe atom residue distance (Å) B Occ A:K1648 b:34.8 occ:1.00 OP2 A:C564 2.6 28.6 1.0 OP2 A:G567 2.6 30.8 1.0 O2' A:A563 2.8 25.6 1.0 OP2 A:U565 2.8 35.0 1.0 O A:HOH2641 2.9 36.9 1.0 O L:HOH201 3.4 39.3 1.0 O3' A:A563 3.5 25.2 1.0 P A:C564 3.6 26.8 1.0 C2' A:A563 3.7 23.3 1.0 P A:G567 3.7 28.2 1.0 O3' A:G566 3.7 28.8 1.0 O2' A:G566 4.0 25.8 1.0 P A:U565 4.0 32.7 1.0 C3' A:A563 4.1 23.7 1.0 O5' A:C564 4.3 28.4 1.0 O5' A:G567 4.3 28.9 1.0 N7 A:G567 4.3 23.1 1.0 C5' A:C564 4.4 30.7 1.0 C8 A:G567 4.4 22.7 1.0 NH2 L:ARG12 4.4 27.7 1.0 OP1 A:U565 4.5 35.4 1.0 C3' A:G566 4.5 26.9 1.0 O3' A:C564 4.7 32.3 1.0 C2' A:G566 4.8 26.5 1.0 OP1 A:C564 4.9 26.4 1.0

Potassium binding site 8 out of 25 in the ROUND2 30S Head (No Antibiotic)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of ROUND2 30S Head (No Antibiotic) within 5.0Å range: probe atom residue distance (Å) B Occ A:K1649 b:27.0 occ:1.00 O4 A:U12 2.7 23.2 1.0 O6 A:G22 2.7 21.0 1.0 O A:HOH2821 2.8 28.1 1.0 O6 A:G11 3.0 23.0 1.0 O6 A:G21 3.0 23.4 1.0 O A:HOH3243 3.0 35.2 1.0 C6 A:G21 3.5 20.1 1.0 O A:HOH2862 3.6 41.2 1.0 N4 A:C23 3.6 18.9 1.0 C4 A:U12 3.6 21.3 1.0 N3 A:U12 3.8 20.5 1.0 C6 A:G22 3.8 19.2 1.0 N1 A:G21 3.8 19.0 1.0 C6 A:G11 4.0 21.5 1.0 N7 A:G22 4.1 19.5 1.0 C5 A:G22 4.3 19.4 1.0 C5 A:G21 4.4 21.1 1.0 C4 A:C23 4.6 19.8 1.0 C5 A:G11 4.8 21.8 1.0 C2 A:G21 4.8 18.1 1.0 N1 A:G11 4.9 21.5 1.0 C5 A:U12 5.0 22.9 1.0 N1 A:G22 5.0 18.7 1.0 N7 A:G11 5.0 23.2 1.0

Potassium binding site 9 out of 25 in the ROUND2 30S Head (No Antibiotic)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of ROUND2 30S Head (No Antibiotic) within 5.0Å range: probe atom residue distance (Å) B Occ A:K1650 b:23.2 occ:1.00 O4 A:U375 2.6 20.6 1.0 O2' A:C372 2.8 26.4 1.0 O6 A:G376 2.8 19.4 1.0 O A:HOH1859 2.9 25.3 1.0 O2 A:C372 2.9 22.0 1.0 O A:HOH3172 2.9 30.5 1.0 O A:HOH1999 2.9 29.0 1.0 O4 A:U387 2.9 23.8 1.0 O A:HOH2097 3.3 34.9 1.0 C4 A:U375 3.7 19.3 1.0 C2 A:C372 3.7 22.1 1.0 C4 A:U387 3.8 21.7 1.0 C6 A:G376 3.8 19.4 1.0 N6 A:A389 3.9 16.2 1.0 N3 A:U387 3.9 21.6 1.0 C2' A:C372 4.0 26.9 1.0 O A:HOH3066 4.2 40.6 1.0 C5 A:U375 4.3 19.8 1.0 N7 A:G376 4.3 20.3 1.0 O A:HOH2230 4.4 28.9 1.0 N3 A:C372 4.4 22.9 1.0 C5 A:G376 4.4 20.4 1.0 C1' A:C372 4.5 25.2 1.0 N1 A:C372 4.5 22.8 1.0 N6 A:A374 4.7 18.3 1.0 N7 A:A374 4.7 22.1 1.0 N3 A:U375 4.8 18.7 1.0 O A:HOH1832 4.9 37.4 1.0 N1 A:G376 5.0 19.3 1.0 O A:HOH3359 5.0 60.0 1.0 C6 A:A389 5.0 16.2 1.0 N4 A:C386 5.0 21.3 1.0

Potassium binding site 10 out of 25 in the ROUND2 30S Head (No Antibiotic)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of ROUND2 30S Head (No Antibiotic) within 5.0Å range: probe atom residue distance (Å) B Occ A:K1651 b:50.3 occ:1.00 O6 A:G428 2.8 36.8 1.0 N6 A:A415 2.8 44.1 1.0 O4 A:U427 2.9 34.9 1.0 O A:HOH2993 2.9 50.6 1.0 OP1 A:G413 3.0 60.0 1.0 O A:HOH2659 3.4 47.3 1.0 N7 A:A414 3.5 43.9 1.0 C6 A:G428 3.5 31.1 1.0 N1 A:G428 3.5 30.7 1.0 OP2 A:A414 3.8 53.5 1.0 C4 A:U427 3.9 30.4 1.0 C6 A:A415 4.0 40.7 1.0 O A:HOH1926 4.0 30.6 1.0 MG A:MG1667 4.1 52.6 1.0 P A:G413 4.1 56.9 1.0 N3 A:U427 4.2 28.9 1.0 O4 A:U426 4.2 32.6 1.0 O5' A:G413 4.2 56.3 1.0 C8 A:A414 4.2 43.6 1.0 N7 A:A415 4.4 41.7 1.0 C5 A:A414 4.5 42.7 1.0 C5 A:A415 4.5 41.1 1.0 N6 A:A414 4.6 41.4 1.0 OP2 A:G413 4.7 68.6 1.0 C2 A:G428 4.7 30.9 1.0 C5 A:G428 4.7 30.8 1.0 N7 A:G413 4.9 46.5 1.0 N1 A:A415 5.0 41.0 1.0 O A:HOH2782 5.0 51.1 1.0 O6 A:G416 5.0 29.9 1.0 C6 A:A414 5.0 41.4 1.0

H.Paternoga, C.Crowe-Mcauliffe, L.V.Bock, T.O.Koller, M.Morici, B.Beckert, A.G.Myasnikov, H.Grubmueller, J.Novacek, D.N.Wilson. Structural Conservation of Antibiotic Interaction with Ribosomes To Be Published.