Potassium in PDB 8bm1: Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions
Enzymatic activity of Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions
All present enzymatic activity of Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions:
5.6.1.7;
Other elements in 8bm1:
The structure of Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions also contains other interesting chemical elements:
Potassium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Potassium atom in the Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions
(pdb code 8bm1). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 14 binding sites of Potassium where determined in the
Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions, PDB code: 8bm1:
Jump to Potassium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Potassium binding site 1 out
of 14 in 8bm1
Go back to
Potassium Binding Sites List in 8bm1
Potassium binding site 1 out
of 14 in the Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:K602
b:7.8
occ:1.00
|
OG1
|
I:THR30
|
2.8
|
2.6
|
1.0
|
|
OG1
|
I:THR90
|
2.9
|
8.8
|
1.0
|
|
O3G
|
I:ATP603
|
3.1
|
11.6
|
1.0
|
|
O
|
I:LYS51
|
3.1
|
22.1
|
1.0
|
|
CB
|
I:THR30
|
3.3
|
2.1
|
1.0
|
|
O2A
|
I:ATP603
|
3.3
|
13.8
|
1.0
|
|
O
|
I:THR30
|
3.4
|
7.0
|
1.0
|
|
C
|
I:THR30
|
3.6
|
1.9
|
1.0
|
|
O3B
|
I:ATP603
|
3.6
|
5.4
|
1.0
|
|
C
|
I:LYS51
|
3.7
|
4.8
|
1.0
|
|
O3A
|
I:ATP603
|
3.7
|
8.5
|
1.0
|
|
CB
|
I:THR90
|
3.7
|
0.0
|
1.0
|
|
PG
|
I:ATP603
|
3.8
|
0.1
|
1.0
|
|
PA
|
I:ATP603
|
3.9
|
0.0
|
1.0
|
|
N
|
I:GLY53
|
4.0
|
3.0
|
1.0
|
|
CA
|
I:ASP52
|
4.0
|
4.3
|
1.0
|
|
N
|
I:LEU31
|
4.1
|
1.4
|
1.0
|
|
O1A
|
I:ATP603
|
4.1
|
20.8
|
1.0
|
|
CG
|
I:LYS51
|
4.1
|
3.6
|
1.0
|
|
N
|
I:ASP52
|
4.1
|
2.7
|
1.0
|
|
CA
|
I:THR30
|
4.1
|
7.9
|
1.0
|
|
CG2
|
I:THR90
|
4.2
|
0.0
|
1.0
|
|
O1G
|
I:ATP603
|
4.2
|
18.9
|
1.0
|
|
CA
|
I:LEU31
|
4.4
|
0.0
|
1.0
|
|
C
|
I:ASP52
|
4.4
|
7.6
|
1.0
|
|
PB
|
I:ATP603
|
4.5
|
0.0
|
1.0
|
|
NZ
|
I:LYS51
|
4.5
|
0.0
|
1.0
|
|
CG2
|
I:THR30
|
4.5
|
1.0
|
1.0
|
|
CA
|
I:LYS51
|
4.6
|
2.8
|
1.0
|
|
CB
|
I:LYS51
|
4.8
|
2.2
|
1.0
|
|
CA
|
I:GLY53
|
4.9
|
2.1
|
1.0
|
|
Potassium binding site 2 out
of 14 in 8bm1
Go back to
Potassium Binding Sites List in 8bm1
Potassium binding site 2 out
of 14 in the Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:K603
b:6.1
occ:1.00
|
O
|
G:LYS51
|
2.6
|
16.0
|
1.0
|
|
O1A
|
G:ATP602
|
2.9
|
18.2
|
1.0
|
|
OG1
|
G:THR90
|
2.9
|
13.2
|
1.0
|
|
O
|
G:THR30
|
3.0
|
8.5
|
1.0
|
|
OG1
|
G:THR30
|
3.0
|
5.2
|
1.0
|
|
O1G
|
G:ATP602
|
3.2
|
19.6
|
1.0
|
|
O3A
|
G:ATP602
|
3.3
|
18.1
|
1.0
|
|
C
|
G:THR30
|
3.3
|
0.0
|
1.0
|
|
CB
|
G:THR30
|
3.3
|
5.6
|
1.0
|
|
PA
|
G:ATP602
|
3.6
|
0.0
|
1.0
|
|
CB
|
G:THR90
|
3.6
|
1.2
|
1.0
|
|
N
|
G:LEU31
|
3.8
|
3.8
|
1.0
|
|
C
|
G:LYS51
|
3.9
|
4.7
|
1.0
|
|
CA
|
G:LEU31
|
4.0
|
0.0
|
1.0
|
|
CG2
|
G:THR90
|
4.0
|
0.0
|
1.0
|
|
CA
|
G:THR30
|
4.0
|
3.5
|
1.0
|
|
PG
|
G:ATP602
|
4.0
|
1.0
|
1.0
|
|
NZ
|
G:LYS51
|
4.1
|
0.0
|
1.0
|
|
O3B
|
G:ATP602
|
4.2
|
17.9
|
1.0
|
|
O3G
|
G:ATP602
|
4.2
|
23.3
|
1.0
|
|
CG
|
G:LYS51
|
4.2
|
6.7
|
1.0
|
|
N
|
G:GLY53
|
4.4
|
10.5
|
1.0
|
|
O2A
|
G:ATP602
|
4.4
|
26.6
|
1.0
|
|
PB
|
G:ATP602
|
4.5
|
0.8
|
1.0
|
|
C
|
G:ASP52
|
4.6
|
7.5
|
1.0
|
|
CA
|
G:ASP52
|
4.6
|
6.3
|
1.0
|
|
CG2
|
G:THR30
|
4.6
|
1.2
|
1.0
|
|
N
|
G:ASP52
|
4.7
|
14.3
|
1.0
|
|
CA
|
G:LYS51
|
4.8
|
3.5
|
1.0
|
|
CA
|
G:GLY53
|
4.9
|
5.3
|
1.0
|
|
O5'
|
G:ATP602
|
4.9
|
24.6
|
1.0
|
|
C
|
G:LEU31
|
4.9
|
6.2
|
1.0
|
|
CB
|
G:LYS51
|
4.9
|
5.9
|
1.0
|
|
O
|
G:VAL27
|
4.9
|
8.7
|
1.0
|
|
CB
|
G:LEU31
|
5.0
|
6.2
|
1.0
|
|
CE
|
G:LYS51
|
5.0
|
3.6
|
1.0
|
|
CD1
|
G:LEU31
|
5.0
|
4.6
|
1.0
|
|
Potassium binding site 3 out
of 14 in 8bm1
Go back to
Potassium Binding Sites List in 8bm1
Potassium binding site 3 out
of 14 in the Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K602
b:6.2
occ:1.00
|
O
|
A:LYS51
|
2.6
|
13.2
|
1.0
|
|
OG1
|
A:THR90
|
2.7
|
3.5
|
1.0
|
|
OG1
|
A:THR30
|
2.8
|
3.3
|
1.0
|
|
O3G
|
A:ATP603
|
3.0
|
13.3
|
1.0
|
|
O
|
A:THR30
|
3.4
|
3.0
|
1.0
|
|
CB
|
A:THR30
|
3.4
|
2.5
|
1.0
|
|
O
|
A:HOH709
|
3.4
|
12.3
|
1.0
|
|
CB
|
A:THR90
|
3.5
|
0.0
|
1.0
|
|
C
|
A:THR30
|
3.5
|
0.9
|
1.0
|
|
O3A
|
A:ATP603
|
3.6
|
2.4
|
1.0
|
|
O3B
|
A:ATP603
|
3.6
|
6.9
|
1.0
|
|
O2A
|
A:ATP603
|
3.6
|
13.5
|
1.0
|
|
PG
|
A:ATP603
|
3.6
|
0.0
|
1.0
|
|
C
|
A:LYS51
|
3.8
|
2.1
|
1.0
|
|
O1G
|
A:ATP603
|
3.8
|
17.7
|
1.0
|
|
N
|
A:LEU31
|
3.9
|
0.0
|
1.0
|
|
CG2
|
A:THR90
|
3.9
|
0.0
|
1.0
|
|
PA
|
A:ATP603
|
4.0
|
0.0
|
1.0
|
|
N
|
A:GLY53
|
4.1
|
2.4
|
1.0
|
|
CA
|
A:THR30
|
4.1
|
0.0
|
1.0
|
|
CA
|
A:LEU31
|
4.1
|
0.0
|
1.0
|
|
NZ
|
A:LYS51
|
4.3
|
0.0
|
1.0
|
|
CG
|
A:LYS51
|
4.3
|
0.0
|
1.0
|
|
O1A
|
A:ATP603
|
4.3
|
23.3
|
1.0
|
|
CA
|
A:ASP52
|
4.3
|
4.0
|
1.0
|
|
PB
|
A:ATP603
|
4.3
|
0.0
|
1.0
|
|
N
|
A:ASP52
|
4.5
|
0.0
|
1.0
|
|
C
|
A:ASP52
|
4.5
|
9.2
|
1.0
|
|
CG2
|
A:THR30
|
4.7
|
0.0
|
1.0
|
|
CA
|
A:LYS51
|
4.8
|
2.5
|
1.0
|
|
CA
|
A:THR90
|
4.9
|
0.0
|
1.0
|
|
CA
|
A:GLY53
|
4.9
|
4.2
|
1.0
|
|
CB
|
A:LYS51
|
5.0
|
0.8
|
1.0
|
|
Potassium binding site 4 out
of 14 in 8bm1
Go back to
Potassium Binding Sites List in 8bm1
Potassium binding site 4 out
of 14 in the Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 4 of Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:K603
b:14.4
occ:1.00
|
O
|
C:LYS51
|
2.6
|
24.8
|
1.0
|
|
OG1
|
C:THR90
|
2.7
|
24.7
|
1.0
|
|
OG1
|
C:THR30
|
2.9
|
14.2
|
1.0
|
|
O1A
|
C:ATP602
|
3.0
|
23.7
|
1.0
|
|
O
|
C:THR30
|
3.0
|
21.9
|
1.0
|
|
CB
|
C:THR30
|
3.3
|
18.1
|
1.0
|
|
O3A
|
C:ATP602
|
3.3
|
21.1
|
1.0
|
|
C
|
C:THR30
|
3.4
|
12.4
|
1.0
|
|
CB
|
C:THR90
|
3.5
|
10.5
|
1.0
|
|
O3G
|
C:ATP602
|
3.6
|
21.5
|
1.0
|
|
O1G
|
C:ATP602
|
3.7
|
25.9
|
1.0
|
|
PA
|
C:ATP602
|
3.7
|
7.7
|
1.0
|
|
CG2
|
C:THR90
|
3.8
|
7.1
|
1.0
|
|
C
|
C:LYS51
|
3.9
|
12.7
|
1.0
|
|
N
|
C:LEU31
|
3.9
|
17.6
|
1.0
|
|
PG
|
C:ATP602
|
4.0
|
11.1
|
1.0
|
|
CA
|
C:THR30
|
4.0
|
13.4
|
1.0
|
|
O3B
|
C:ATP602
|
4.0
|
18.5
|
1.0
|
|
CA
|
C:LEU31
|
4.0
|
8.8
|
1.0
|
|
NZ
|
C:LYS51
|
4.2
|
10.5
|
1.0
|
|
CG
|
C:LYS51
|
4.2
|
19.0
|
1.0
|
|
N
|
C:GLY53
|
4.2
|
16.2
|
1.0
|
|
PB
|
C:ATP602
|
4.4
|
7.7
|
1.0
|
|
C
|
C:ASP52
|
4.5
|
11.6
|
1.0
|
|
O2A
|
C:ATP602
|
4.5
|
30.7
|
1.0
|
|
CG2
|
C:THR30
|
4.6
|
15.1
|
1.0
|
|
CA
|
C:ASP52
|
4.6
|
9.4
|
1.0
|
|
N
|
C:ASP52
|
4.7
|
22.7
|
1.0
|
|
CA
|
C:GLY53
|
4.7
|
8.9
|
1.0
|
|
CA
|
C:LYS51
|
4.9
|
14.2
|
1.0
|
|
CA
|
C:THR90
|
4.9
|
8.2
|
1.0
|
|
O
|
C:VAL27
|
4.9
|
18.5
|
1.0
|
|
CB
|
C:LYS51
|
4.9
|
17.3
|
1.0
|
|
O5'
|
C:ATP602
|
5.0
|
24.2
|
1.0
|
|
Potassium binding site 5 out
of 14 in 8bm1
Go back to
Potassium Binding Sites List in 8bm1
Potassium binding site 5 out
of 14 in the Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 5 of Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:K602
b:18.9
occ:1.00
|
O
|
D:LYS51
|
2.6
|
26.3
|
1.0
|
|
OG1
|
D:THR90
|
2.8
|
14.8
|
1.0
|
|
OG1
|
D:THR30
|
2.8
|
12.5
|
1.0
|
|
O3G
|
D:ATP603
|
3.0
|
15.5
|
1.0
|
|
O
|
D:THR30
|
3.2
|
17.7
|
1.0
|
|
CB
|
D:THR30
|
3.3
|
12.9
|
1.0
|
|
C
|
D:THR30
|
3.4
|
10.0
|
1.0
|
|
O2A
|
D:ATP603
|
3.4
|
17.9
|
1.0
|
|
O3A
|
D:ATP603
|
3.5
|
3.6
|
1.0
|
|
CB
|
D:THR90
|
3.5
|
5.6
|
1.0
|
|
C
|
D:LYS51
|
3.8
|
12.0
|
1.0
|
|
O3B
|
D:ATP603
|
3.8
|
6.9
|
1.0
|
|
PG
|
D:ATP603
|
3.8
|
13.2
|
1.0
|
|
N
|
D:LEU31
|
3.8
|
8.6
|
1.0
|
|
PA
|
D:ATP603
|
3.9
|
9.5
|
1.0
|
|
CG2
|
D:THR90
|
3.9
|
2.8
|
1.0
|
|
CA
|
D:THR30
|
4.0
|
1.9
|
1.0
|
|
CA
|
D:LEU31
|
4.1
|
8.1
|
1.0
|
|
O1G
|
D:ATP603
|
4.1
|
21.6
|
1.0
|
|
CG
|
D:LYS51
|
4.1
|
9.0
|
1.0
|
|
NZ
|
D:LYS51
|
4.2
|
5.7
|
1.0
|
|
O1A
|
D:ATP603
|
4.2
|
29.9
|
1.0
|
|
N
|
D:GLY53
|
4.2
|
5.4
|
1.0
|
|
CA
|
D:ASP52
|
4.4
|
9.9
|
1.0
|
|
PB
|
D:ATP603
|
4.4
|
2.8
|
1.0
|
|
N
|
D:ASP52
|
4.5
|
8.4
|
1.0
|
|
CG2
|
D:THR30
|
4.6
|
8.4
|
1.0
|
|
C
|
D:ASP52
|
4.6
|
16.9
|
1.0
|
|
CA
|
D:LYS51
|
4.8
|
10.1
|
1.0
|
|
CB
|
D:LYS51
|
4.9
|
7.2
|
1.0
|
|
CA
|
D:THR90
|
4.9
|
0.0
|
1.0
|
|
CE
|
D:LYS51
|
5.0
|
9.4
|
1.0
|
|
Potassium binding site 6 out
of 14 in 8bm1
Go back to
Potassium Binding Sites List in 8bm1
Potassium binding site 6 out
of 14 in the Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 6 of Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:K603
b:10.8
occ:1.00
|
O
|
F:LYS51
|
2.6
|
16.1
|
1.0
|
|
O1A
|
F:ATP602
|
2.9
|
23.7
|
1.0
|
|
OG1
|
F:THR90
|
2.9
|
14.8
|
1.0
|
|
OG1
|
F:THR30
|
3.0
|
8.1
|
1.0
|
|
O
|
F:THR30
|
3.0
|
10.6
|
1.0
|
|
O3A
|
F:ATP602
|
3.2
|
23.8
|
1.0
|
|
O1G
|
F:ATP602
|
3.3
|
23.6
|
1.0
|
|
CB
|
F:THR30
|
3.3
|
8.3
|
1.0
|
|
C
|
F:THR30
|
3.4
|
2.3
|
1.0
|
|
PA
|
F:ATP602
|
3.6
|
6.4
|
1.0
|
|
CB
|
F:THR90
|
3.6
|
4.5
|
1.0
|
|
C
|
F:LYS51
|
3.9
|
7.9
|
1.0
|
|
N
|
F:LEU31
|
3.9
|
5.2
|
1.0
|
|
PG
|
F:ATP602
|
3.9
|
12.4
|
1.0
|
|
O3G
|
F:ATP602
|
3.9
|
28.1
|
1.0
|
|
CG2
|
F:THR90
|
4.0
|
1.2
|
1.0
|
|
CA
|
F:THR30
|
4.0
|
5.5
|
1.0
|
|
O3B
|
F:ATP602
|
4.0
|
23.3
|
1.0
|
|
NZ
|
F:LYS51
|
4.0
|
3.6
|
1.0
|
|
CA
|
F:LEU31
|
4.0
|
2.7
|
1.0
|
|
CG
|
F:LYS51
|
4.2
|
10.9
|
1.0
|
|
PB
|
F:ATP602
|
4.3
|
7.2
|
1.0
|
|
N
|
F:GLY53
|
4.4
|
14.6
|
1.0
|
|
O2A
|
F:ATP602
|
4.4
|
33.9
|
1.0
|
|
C
|
F:ASP52
|
4.6
|
10.5
|
1.0
|
|
CA
|
F:ASP52
|
4.6
|
9.8
|
1.0
|
|
CG2
|
F:THR30
|
4.6
|
4.9
|
1.0
|
|
N
|
F:ASP52
|
4.7
|
15.9
|
1.0
|
|
O5'
|
F:ATP602
|
4.8
|
27.5
|
1.0
|
|
CA
|
F:LYS51
|
4.9
|
6.8
|
1.0
|
|
CA
|
F:GLY53
|
4.9
|
7.7
|
1.0
|
|
CB
|
F:LYS51
|
4.9
|
10.1
|
1.0
|
|
CE
|
F:LYS51
|
4.9
|
7.8
|
1.0
|
|
C
|
F:LEU31
|
5.0
|
9.2
|
1.0
|
|
O
|
F:VAL27
|
5.0
|
8.2
|
1.0
|
|
Potassium binding site 7 out
of 14 in 8bm1
Go back to
Potassium Binding Sites List in 8bm1
Potassium binding site 7 out
of 14 in the Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 7 of Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:K602
b:15.9
occ:1.00
|
OG1
|
H:THR30
|
2.9
|
8.8
|
1.0
|
|
O
|
H:LYS51
|
3.0
|
30.4
|
1.0
|
|
OG1
|
H:THR90
|
3.0
|
12.9
|
1.0
|
|
O3G
|
H:ATP603
|
3.3
|
20.0
|
1.0
|
|
O
|
H:HOH709
|
3.3
|
16.3
|
1.0
|
|
CB
|
H:THR30
|
3.3
|
8.3
|
1.0
|
|
O
|
H:THR30
|
3.3
|
9.4
|
1.0
|
|
O3B
|
H:ATP603
|
3.6
|
16.9
|
1.0
|
|
C
|
H:THR30
|
3.6
|
3.8
|
1.0
|
|
C
|
H:LYS51
|
3.6
|
7.8
|
1.0
|
|
O2A
|
H:ATP603
|
3.6
|
25.2
|
1.0
|
|
O1G
|
H:ATP603
|
3.7
|
31.7
|
1.0
|
|
PG
|
H:ATP603
|
3.7
|
5.5
|
1.0
|
|
O3A
|
H:ATP603
|
3.7
|
13.9
|
1.0
|
|
CB
|
H:THR90
|
3.8
|
0.0
|
1.0
|
|
CG
|
H:LYS51
|
4.0
|
4.8
|
1.0
|
|
PA
|
H:ATP603
|
4.0
|
2.0
|
1.0
|
|
CA
|
H:ASP52
|
4.1
|
10.8
|
1.0
|
|
O1A
|
H:ATP603
|
4.1
|
31.7
|
1.0
|
|
N
|
H:LEU31
|
4.1
|
1.4
|
1.0
|
|
N
|
H:ASP52
|
4.1
|
4.9
|
1.0
|
|
CA
|
H:THR30
|
4.1
|
0.0
|
1.0
|
|
N
|
H:GLY53
|
4.1
|
3.5
|
1.0
|
|
CG2
|
H:THR90
|
4.2
|
0.0
|
1.0
|
|
NZ
|
H:LYS51
|
4.3
|
0.2
|
1.0
|
|
CA
|
H:LEU31
|
4.4
|
0.8
|
1.0
|
|
C
|
H:ASP52
|
4.4
|
16.4
|
1.0
|
|
PB
|
H:ATP603
|
4.5
|
0.0
|
1.0
|
|
CA
|
H:LYS51
|
4.5
|
4.9
|
1.0
|
|
CG2
|
H:THR30
|
4.5
|
4.4
|
1.0
|
|
CB
|
H:LYS51
|
4.7
|
6.8
|
1.0
|
|
CE
|
H:LYS51
|
5.0
|
7.9
|
1.0
|
|
Potassium binding site 8 out
of 14 in 8bm1
Go back to
Potassium Binding Sites List in 8bm1
Potassium binding site 8 out
of 14 in the Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 8 of Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:K603
b:0.0
occ:1.00
|
O1A
|
K:ATP602
|
2.7
|
10.4
|
1.0
|
|
O
|
K:LYS51
|
2.7
|
6.2
|
1.0
|
|
OG1
|
K:THR90
|
2.9
|
7.1
|
1.0
|
|
O
|
K:THR30
|
3.0
|
5.0
|
1.0
|
|
OG1
|
K:THR30
|
3.1
|
7.6
|
1.0
|
|
O1G
|
K:ATP602
|
3.2
|
14.4
|
1.0
|
|
O3A
|
K:ATP602
|
3.3
|
6.9
|
1.0
|
|
C
|
K:THR30
|
3.4
|
0.0
|
1.0
|
|
CB
|
K:THR30
|
3.4
|
2.2
|
1.0
|
|
PA
|
K:ATP602
|
3.5
|
0.0
|
1.0
|
|
CB
|
K:THR90
|
3.6
|
0.0
|
1.0
|
|
O3G
|
K:ATP602
|
3.7
|
17.6
|
1.0
|
|
PG
|
K:ATP602
|
3.8
|
0.0
|
1.0
|
|
C
|
K:LYS51
|
3.9
|
0.0
|
1.0
|
|
N
|
K:LEU31
|
4.0
|
1.3
|
1.0
|
|
O3B
|
K:ATP602
|
4.0
|
8.4
|
1.0
|
|
CG2
|
K:THR90
|
4.0
|
0.0
|
1.0
|
|
CA
|
K:LEU31
|
4.0
|
0.0
|
1.0
|
|
NZ
|
K:LYS51
|
4.1
|
0.0
|
1.0
|
|
CA
|
K:THR30
|
4.1
|
0.0
|
1.0
|
|
CG
|
K:LYS51
|
4.1
|
6.0
|
1.0
|
|
N
|
K:GLY53
|
4.2
|
5.8
|
1.0
|
|
O2A
|
K:ATP602
|
4.2
|
24.7
|
1.0
|
|
PB
|
K:ATP602
|
4.4
|
0.0
|
1.0
|
|
CG2
|
K:THR30
|
4.7
|
0.0
|
1.0
|
|
CB
|
K:LYS51
|
4.8
|
3.1
|
1.0
|
|
CA
|
K:GLY53
|
4.8
|
0.0
|
1.0
|
|
CA
|
K:ASP52
|
4.8
|
0.0
|
1.0
|
|
CA
|
K:LYS51
|
4.8
|
0.0
|
1.0
|
|
N
|
K:ASP52
|
4.8
|
9.0
|
1.0
|
|
O5'
|
K:ATP602
|
4.8
|
16.8
|
1.0
|
|
C
|
K:ASP52
|
4.9
|
0.0
|
1.0
|
|
N
|
K:GLY32
|
4.9
|
0.9
|
1.0
|
|
C
|
K:LEU31
|
4.9
|
2.6
|
1.0
|
|
Potassium binding site 9 out
of 14 in 8bm1
Go back to
Potassium Binding Sites List in 8bm1
Potassium binding site 9 out
of 14 in the Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 9 of Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:K602
b:9.4
occ:1.00
|
OG1
|
L:THR90
|
2.8
|
12.1
|
1.0
|
|
OG1
|
L:THR30
|
2.9
|
9.2
|
1.0
|
|
O3G
|
L:ATP603
|
3.1
|
21.6
|
1.0
|
|
O
|
L:LYS51
|
3.2
|
25.1
|
1.0
|
|
O2A
|
L:ATP603
|
3.3
|
18.3
|
1.0
|
|
CB
|
L:THR30
|
3.4
|
9.2
|
1.0
|
|
O
|
L:THR30
|
3.4
|
12.4
|
1.0
|
|
O
|
L:HOH708
|
3.4
|
16.3
|
1.0
|
|
O3B
|
L:ATP603
|
3.5
|
14.8
|
1.0
|
|
O3A
|
L:ATP603
|
3.5
|
14.9
|
1.0
|
|
CB
|
L:THR90
|
3.6
|
2.2
|
1.0
|
|
C
|
L:THR30
|
3.6
|
4.6
|
1.0
|
|
PG
|
L:ATP603
|
3.7
|
10.7
|
1.0
|
|
PA
|
L:ATP603
|
3.8
|
4.8
|
1.0
|
|
C
|
L:LYS51
|
3.8
|
8.2
|
1.0
|
|
O1G
|
L:ATP603
|
3.8
|
22.6
|
1.0
|
|
O1A
|
L:ATP603
|
4.0
|
32.4
|
1.0
|
|
CG2
|
L:THR90
|
4.0
|
2.2
|
1.0
|
|
N
|
L:LEU31
|
4.0
|
3.6
|
1.0
|
|
N
|
L:GLY53
|
4.1
|
4.0
|
1.0
|
|
CA
|
L:THR30
|
4.1
|
2.4
|
1.0
|
|
CA
|
L:ASP52
|
4.1
|
10.1
|
1.0
|
|
CG
|
L:LYS51
|
4.2
|
7.4
|
1.0
|
|
N
|
L:ASP52
|
4.2
|
8.4
|
1.0
|
|
PB
|
L:ATP603
|
4.3
|
1.6
|
1.0
|
|
CA
|
L:LEU31
|
4.3
|
2.9
|
1.0
|
|
NZ
|
L:LYS51
|
4.4
|
0.8
|
1.0
|
|
C
|
L:ASP52
|
4.5
|
13.6
|
1.0
|
|
CG2
|
L:THR30
|
4.6
|
3.7
|
1.0
|
|
CA
|
L:LYS51
|
4.7
|
5.7
|
1.0
|
|
CA
|
L:THR90
|
4.9
|
0.5
|
1.0
|
|
CB
|
L:LYS51
|
4.9
|
7.4
|
1.0
|
|
CA
|
L:GLY53
|
5.0
|
9.3
|
1.0
|
|
OD1
|
L:ASP52
|
5.0
|
24.9
|
1.0
|
|
Potassium binding site 10 out
of 14 in 8bm1
Go back to
Potassium Binding Sites List in 8bm1
Potassium binding site 10 out
of 14 in the Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 10 of Structure of Groel:Groes-Atp Complex Under Continuous Turnover Conditions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:K603
b:3.6
occ:1.00
|
O
|
N:LYS51
|
2.7
|
11.7
|
1.0
|
|
OG1
|
N:THR90
|
2.7
|
9.2
|
1.0
|
|
O1A
|
N:ATP602
|
2.9
|
15.7
|
1.0
|
|
OG1
|
N:THR30
|
2.9
|
5.5
|
1.0
|
|
O1G
|
N:ATP602
|
3.1
|
18.5
|
1.0
|
|
O
|
N:THR30
|
3.1
|
8.6
|
1.0
|
|
CB
|
N:THR30
|
3.4
|
4.2
|
1.0
|
|
O3A
|
N:ATP602
|
3.4
|
15.3
|
1.0
|
|
C
|
N:THR30
|
3.4
|
3.3
|
1.0
|
|
CB
|
N:THR90
|
3.5
|
2.8
|
1.0
|
|
PA
|
N:ATP602
|
3.6
|
0.0
|
1.0
|
|
PG
|
N:ATP602
|
3.8
|
7.4
|
1.0
|
|
CG2
|
N:THR90
|
3.8
|
0.0
|
1.0
|
|
O3G
|
N:ATP602
|
3.8
|
22.2
|
1.0
|
|
C
|
N:LYS51
|
3.9
|
5.0
|
1.0
|
|
O3B
|
N:ATP602
|
4.0
|
15.8
|
1.0
|
|
N
|
N:LEU31
|
4.0
|
6.6
|
1.0
|
|
N
|
N:GLY53
|
4.0
|
12.1
|
1.0
|
|
CA
|
N:THR30
|
4.1
|
4.5
|
1.0
|
|
CA
|
N:LEU31
|
4.1
|
1.1
|
1.0
|
|
CG
|
N:LYS51
|
4.2
|
8.8
|
1.0
|
|
NZ
|
N:LYS51
|
4.2
|
0.0
|
1.0
|
|
O2A
|
N:ATP602
|
4.4
|
28.7
|
1.0
|
|
PB
|
N:ATP602
|
4.5
|
0.5
|
1.0
|
|
CA
|
N:GLY53
|
4.6
|
6.5
|
1.0
|
|
CG2
|
N:THR30
|
4.7
|
2.8
|
1.0
|
|
C
|
N:ASP52
|
4.7
|
8.8
|
1.0
|
|
CA
|
N:ASP52
|
4.7
|
9.4
|
1.0
|
|
N
|
N:ASP52
|
4.8
|
15.3
|
1.0
|
|
CA
|
N:LYS51
|
4.8
|
3.3
|
1.0
|
|
CB
|
N:LYS51
|
4.8
|
6.1
|
1.0
|
|
CA
|
N:THR90
|
4.9
|
2.2
|
1.0
|
|
O
|
N:VAL27
|
4.9
|
10.7
|
1.0
|
|
O5'
|
N:ATP602
|
5.0
|
20.0
|
1.0
|
|
Reference:
S.Torino,
M.Dhurandhar,
A.Stroobants,
R.Claessens,
R.Efremov.
Time-Resolved Cryo-Em Using A Combination of Droplet Microfluidics with on-Demand Jetting Nat.Methods 2023.
ISSN: ESSN 1548-7105
DOI: 10.1038/S41592-023-01967-Z
Page generated: Thu Dec 28 06:49:40 2023
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