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Potassium in PDB 8bh9: Structure of EST1 From Candida Tropicalis in Complex with TLC1 Telomerase Rna Fragment 427-435 / 496-504

Protein crystallography data

The structure of Structure of EST1 From Candida Tropicalis in Complex with TLC1 Telomerase Rna Fragment 427-435 / 496-504, PDB code: 8bh9 was solved by S.Rety, W.F.Chen, X.G.Xi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.87 / 2.09
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 36.448, 79.462, 218.252, 90, 90, 90
R / Rfree (%) 20.6 / 23.8

Potassium Binding Sites:

The binding sites of Potassium atom in the Structure of EST1 From Candida Tropicalis in Complex with TLC1 Telomerase Rna Fragment 427-435 / 496-504 (pdb code 8bh9). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 6 binding sites of Potassium where determined in the Structure of EST1 From Candida Tropicalis in Complex with TLC1 Telomerase Rna Fragment 427-435 / 496-504, PDB code: 8bh9:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6;

Potassium binding site 1 out of 6 in 8bh9

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Potassium binding site 1 out of 6 in the Structure of EST1 From Candida Tropicalis in Complex with TLC1 Telomerase Rna Fragment 427-435 / 496-504


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Structure of EST1 From Candida Tropicalis in Complex with TLC1 Telomerase Rna Fragment 427-435 / 496-504 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K601

b:85.8
occ:1.00
O A:HOH807 2.6 48.2 1.0
O A:HOH812 2.7 72.9 1.0
ND2 A:ASN252 3.2 57.8 1.0
O A:HOH772 3.6 65.0 1.0
CG2 A:VAL249 3.9 38.1 1.0
CG A:ASN252 4.1 54.9 1.0
CB A:ASN252 4.1 38.5 1.0
CA A:VAL249 4.2 38.8 1.0
CG1 A:VAL249 4.2 41.1 1.0
CZ A:PHE264 4.3 36.5 1.0
CB A:VAL249 4.3 39.7 1.0
ND2 A:ASN281 4.3 44.2 1.0
CG A:ASN281 4.5 51.9 1.0
O A:VAL249 4.7 38.2 1.0
OD1 A:ASN281 4.8 44.4 1.0
CE2 A:PHE264 5.0 38.3 1.0
CB A:ASN281 5.0 42.4 1.0
C A:VAL249 5.0 46.6 1.0

Potassium binding site 2 out of 6 in 8bh9

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Potassium binding site 2 out of 6 in the Structure of EST1 From Candida Tropicalis in Complex with TLC1 Telomerase Rna Fragment 427-435 / 496-504


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Structure of EST1 From Candida Tropicalis in Complex with TLC1 Telomerase Rna Fragment 427-435 / 496-504 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K602

b:100.1
occ:1.00
OD1 A:ASN311 2.7 65.2 1.0
O A:HOH825 2.7 68.4 1.0
O A:HOH779 2.7 51.1 1.0
ND2 A:ASN314 2.7 34.0 1.0
O A:HOH732 3.2 47.7 1.0
CG A:ASN311 3.3 64.6 1.0
CA A:ASN311 3.3 41.6 1.0
CB A:ASN314 3.4 39.8 1.0
CB A:ASN311 3.5 59.5 1.0
CG A:ASN314 3.6 41.0 1.0
CB A:PHE258 3.9 32.7 1.0
O A:ASN311 4.1 43.9 1.0
N A:ASN311 4.2 44.5 1.0
OD1 A:ASP256 4.2 45.5 1.0
C A:ASN311 4.2 53.3 1.0
ND2 A:ASN311 4.3 75.6 1.0
O A:ALA310 4.5 42.2 1.0
CG A:PHE258 4.6 36.3 1.0
CD2 A:PHE258 4.7 34.3 1.0
C A:ALA310 4.7 48.9 1.0
OD1 A:ASN314 4.8 35.4 1.0
CA A:ASN314 4.9 45.1 1.0

Potassium binding site 3 out of 6 in 8bh9

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Potassium binding site 3 out of 6 in the Structure of EST1 From Candida Tropicalis in Complex with TLC1 Telomerase Rna Fragment 427-435 / 496-504


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Structure of EST1 From Candida Tropicalis in Complex with TLC1 Telomerase Rna Fragment 427-435 / 496-504 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K603

b:81.0
occ:1.00
OD1 A:ASN281 3.0 44.4 1.0
OD1 A:ASN245 3.3 41.5 1.0
O A:HOH812 3.5 72.9 1.0
CG A:ASN281 3.9 51.9 1.0
ND2 A:ASN281 3.9 44.2 1.0
CG2 A:VAL249 4.0 38.1 1.0
CD2 A:LEU277 4.0 53.3 1.0
CG A:ASN245 4.2 40.8 1.0
ND2 A:ASN245 4.4 33.5 1.0
CB A:LEU277 5.0 44.6 1.0

Potassium binding site 4 out of 6 in 8bh9

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Potassium binding site 4 out of 6 in the Structure of EST1 From Candida Tropicalis in Complex with TLC1 Telomerase Rna Fragment 427-435 / 496-504


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Structure of EST1 From Candida Tropicalis in Complex with TLC1 Telomerase Rna Fragment 427-435 / 496-504 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K604

b:105.4
occ:1.00
O A:HOH740 2.6 55.7 1.0
ND1 A:HIS174 2.7 80.7 1.0
CE1 A:HIS174 3.5 93.6 1.0
CG A:HIS174 3.7 64.5 1.0
CB A:HIS174 3.9 45.1 1.0
O A:GLY170 4.4 35.9 1.0
NE2 A:HIS174 4.7 55.9 1.0
CD1 A:ILE237 4.8 35.4 1.0
CD2 A:HIS174 4.8 73.6 1.0
CA A:HIS174 5.0 40.5 1.0

Potassium binding site 5 out of 6 in 8bh9

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Potassium binding site 5 out of 6 in the Structure of EST1 From Candida Tropicalis in Complex with TLC1 Telomerase Rna Fragment 427-435 / 496-504


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Structure of EST1 From Candida Tropicalis in Complex with TLC1 Telomerase Rna Fragment 427-435 / 496-504 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K605

b:101.1
occ:1.00
O A:HOH805 2.5 62.4 1.0
ND2 A:ASN231 3.3 45.2 1.0
OD1 A:ASN231 3.4 52.2 1.0
CG A:ASN231 3.7 51.2 1.0
CZ2 A:TRP263 3.7 44.0 1.0
CH2 A:TRP263 4.0 44.0 1.0
O A:HOH760 4.7 62.9 1.0
CG2 A:ILE227 4.7 39.1 1.0
CE2 A:TRP263 4.9 39.1 1.0

Potassium binding site 6 out of 6 in 8bh9

Go back to Potassium Binding Sites List in 8bh9
Potassium binding site 6 out of 6 in the Structure of EST1 From Candida Tropicalis in Complex with TLC1 Telomerase Rna Fragment 427-435 / 496-504


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Structure of EST1 From Candida Tropicalis in Complex with TLC1 Telomerase Rna Fragment 427-435 / 496-504 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K606

b:81.9
occ:1.00
N A:GLU458 3.2 37.8 1.0
O A:HOH767 3.7 51.1 1.0
CB A:GLU458 3.7 47.0 1.0
NH2 A:ARG511 3.8 44.8 1.0
CA A:PHE457 3.9 40.2 1.0
CB A:PHE457 3.9 35.9 1.0
CA A:GLU458 4.0 41.2 1.0
C A:PHE457 4.1 39.4 1.0
CG1 A:VAL507 4.5 40.9 1.0
CG A:PHE457 4.6 38.7 1.0
CG2 A:VAL507 4.7 41.0 1.0
CZ A:ARG511 4.8 47.5 1.0
CG A:GLU458 4.8 69.9 1.0
CD1 A:PHE457 4.8 33.3 1.0
OE1 A:GLU459 5.0 42.6 1.0

Reference:

S.Rety, W.F.Chen, X.G.Xi. Structure of EST1 From Candida Tropicalis in Complex with TLC1 Telomerase Rna Fragment 427-435 / 496-504 To Be Published.
Page generated: Thu Dec 28 06:49:33 2023

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