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Potassium in PDB 7zrg: Cryo-Em Map of the Wt Kdpfabc Complex in the E1_ATPEARLY Conformation, Under Turnover Conditions

Enzymatic activity of Cryo-Em Map of the Wt Kdpfabc Complex in the E1_ATPEARLY Conformation, Under Turnover Conditions

All present enzymatic activity of Cryo-Em Map of the Wt Kdpfabc Complex in the E1_ATPEARLY Conformation, Under Turnover Conditions:
7.2.2.6;

Potassium Binding Sites:

The binding sites of Potassium atom in the Cryo-Em Map of the Wt Kdpfabc Complex in the E1_ATPEARLY Conformation, Under Turnover Conditions (pdb code 7zrg). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 7 binding sites of Potassium where determined in the Cryo-Em Map of the Wt Kdpfabc Complex in the E1_ATPEARLY Conformation, Under Turnover Conditions, PDB code: 7zrg:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7;

Potassium binding site 1 out of 7 in 7zrg

Go back to Potassium Binding Sites List in 7zrg
Potassium binding site 1 out of 7 in the Cryo-Em Map of the Wt Kdpfabc Complex in the E1_ATPEARLY Conformation, Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Cryo-Em Map of the Wt Kdpfabc Complex in the E1_ATPEARLY Conformation, Under Turnover Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K601

b:28.4
occ:1.00
 CG2 A:ILE421 3.4 18.0 1.0
CB B:ALA227 4.2 18.8 1.0
CB A:ILE421 4.5 18.0 1.0
CG1 A:VAL538 4.6 22.2 1.0
CG2 A:VAL538 4.6 22.2 1.0
CD2 B:LEU228 4.6 19.2 1.0
CD2 A:LEU389 4.6 21.8 1.0
C B:ALA227 4.7 18.8 1.0
N B:LEU228 4.8 19.2 1.0
CG B:LEU228 4.8 19.2 1.0
O B:ALA227 4.9 18.8 1.0

Potassium binding site 2 out of 7 in 7zrg

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Potassium binding site 2 out of 7 in the Cryo-Em Map of the Wt Kdpfabc Complex in the E1_ATPEARLY Conformation, Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Cryo-Em Map of the Wt Kdpfabc Complex in the E1_ATPEARLY Conformation, Under Turnover Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K602

b:58.4
occ:1.00
 CG A:PRO425 3.3 15.9 1.0
CD A:PRO425 3.7 15.9 1.0
O A:GLN367 4.0 17.0 1.0
O A:ILE368 4.0 17.6 1.0
O A:ILE421 4.0 18.0 1.0
C A:ILE368 4.1 17.6 1.0
CG1 A:VAL538 4.3 22.2 1.0
CZ A:PHE386 4.3 17.4 1.0
OG1 A:THR424 4.4 15.9 1.0
N A:GLY369 4.4 22.7 1.0
CA A:GLY369 4.6 22.7 1.0
CG2 A:ILE421 4.6 18.0 1.0
CB A:PRO425 4.7 15.9 1.0
CA A:ILE368 4.7 17.6 1.0
CE2 A:PHE386 4.8 17.4 1.0
N A:PRO425 4.9 15.9 1.0
C A:ILE421 5.0 18.0 1.0

Potassium binding site 3 out of 7 in 7zrg

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Potassium binding site 3 out of 7 in the Cryo-Em Map of the Wt Kdpfabc Complex in the E1_ATPEARLY Conformation, Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Cryo-Em Map of the Wt Kdpfabc Complex in the E1_ATPEARLY Conformation, Under Turnover Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K603

b:75.4
occ:1.00
 O A:GLY369 3.0 22.7 1.0
CA A:GLY369 3.4 22.7 1.0
C A:GLY369 3.6 22.7 1.0
CA A:GLY382 4.2 16.5 1.0
OG1 A:THR424 4.5 15.9 1.0
CE2 A:PHE386 4.6 17.4 1.0
N A:GLY369 4.7 22.7 1.0
CG1 A:VAL371 4.8 17.8 1.0
CD1 A:ILE421 4.8 18.0 1.0
O A:ILE368 4.8 17.6 1.0
CD1 A:LEU385 4.9 16.0 1.0
K A:K604 4.9 67.0 1.0
N A:GLU370 5.0 18.1 1.0
O A:ALA420 5.0 17.2 1.0

Potassium binding site 4 out of 7 in 7zrg

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Potassium binding site 4 out of 7 in the Cryo-Em Map of the Wt Kdpfabc Complex in the E1_ATPEARLY Conformation, Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Cryo-Em Map of the Wt Kdpfabc Complex in the E1_ATPEARLY Conformation, Under Turnover Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K604

b:67.0
occ:1.00
 O A:GLY492 3.6 20.4 1.0
OD1 A:ASN466 4.0 18.6 1.0
CG1 A:VAL496 4.4 19.1 1.0
CG2 A:THR424 4.4 15.9 1.0
O A:ASN465 4.4 17.4 1.0
CG2 A:VAL496 4.5 19.1 1.0
C A:ASN465 4.6 17.4 1.0
CB A:VAL496 4.6 19.1 1.0
CG A:ASN466 4.7 18.6 1.0
CB A:ASN466 4.7 18.6 1.0
C A:GLY492 4.7 20.4 1.0
CA A:ASN465 4.7 17.4 1.0
O A:ALA464 4.8 19.6 1.0
CB A:SER378 4.8 18.3 1.0
O A:GLY369 4.8 22.7 1.0
K A:K603 4.9 75.4 1.0

Potassium binding site 5 out of 7 in 7zrg

Go back to Potassium Binding Sites List in 7zrg
Potassium binding site 5 out of 7 in the Cryo-Em Map of the Wt Kdpfabc Complex in the E1_ATPEARLY Conformation, Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Cryo-Em Map of the Wt Kdpfabc Complex in the E1_ATPEARLY Conformation, Under Turnover Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K605

b:23.3
occ:1.00
 O A:ASN112 2.8 18.1 1.0
O A:ASN467 2.8 19.0 1.0
O A:ASN231 2.8 16.1 1.0
O A:SER343 2.8 16.9 1.0
O A:THR113 3.0 18.9 1.0
O A:ASN466 3.0 18.6 1.0
O A:CYS344 3.0 16.8 1.0
C A:ASN467 3.4 19.0 1.0
C A:THR113 3.5 18.9 1.0
CA A:THR113 3.5 18.9 1.0
O A:THR230 3.5 17.2 1.0
C A:ASN112 3.7 18.1 1.0
CA A:ASN467 3.7 19.0 1.0
C A:SER343 3.8 16.9 1.0
C A:CYS344 3.8 16.8 1.0
C A:ASN466 3.8 18.6 1.0
C A:ASN231 3.9 16.1 1.0
OG A:SER343 3.9 16.9 1.0
N A:THR113 4.0 18.9 1.0
N A:ASN467 4.2 19.0 1.0
CA A:CYS344 4.3 16.8 1.0
N A:CYS344 4.4 16.8 1.0
CA A:ASN231 4.4 16.1 1.0
N A:GLY468 4.5 20.5 1.0
N A:ASN114 4.6 17.5 1.0
C A:THR230 4.6 17.2 1.0
CA A:SER343 4.8 16.9 1.0
N A:GLY345 4.8 17.4 1.0
CB A:ASN114 4.8 17.5 1.0
CB A:THR113 4.8 18.9 1.0
CB A:SER343 4.9 16.9 1.0
N A:GLY232 4.9 17.5 1.0
CG2 A:THR113 5.0 18.9 1.0
CA A:ASN112 5.0 18.1 1.0

Potassium binding site 6 out of 7 in 7zrg

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Potassium binding site 6 out of 7 in the Cryo-Em Map of the Wt Kdpfabc Complex in the E1_ATPEARLY Conformation, Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Cryo-Em Map of the Wt Kdpfabc Complex in the E1_ATPEARLY Conformation, Under Turnover Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K606

b:19.9
occ:1.00
 OG A:SER378 2.9 18.3 1.0
OG A:SER343 2.9 16.9 1.0
ND2 A:ASN112 3.5 18.1 1.0
O A:ASN466 3.6 18.6 1.0
CB A:ASN466 3.6 18.6 1.0
CA A:GLY375 3.7 19.8 1.0
CB A:SER378 3.7 18.3 1.0
CB A:SER343 3.8 16.9 1.0
O A:ASN112 3.9 18.1 1.0
CB A:ASN112 4.3 18.1 1.0
N A:GLY375 4.4 19.8 1.0
CG A:ASN112 4.4 18.1 1.0
O A:SER343 4.4 16.9 1.0
C A:ASN466 4.5 18.6 1.0
CG A:ASN466 4.6 18.6 1.0
OD1 A:ASN466 4.6 18.6 1.0
CA A:ASN466 4.7 18.6 1.0
C A:ASN112 4.8 18.1 1.0
O A:ASN465 4.9 17.4 1.0
C A:GLY375 5.0 19.8 1.0

Potassium binding site 7 out of 7 in 7zrg

Go back to Potassium Binding Sites List in 7zrg
Potassium binding site 7 out of 7 in the Cryo-Em Map of the Wt Kdpfabc Complex in the E1_ATPEARLY Conformation, Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Cryo-Em Map of the Wt Kdpfabc Complex in the E1_ATPEARLY Conformation, Under Turnover Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K607

b:25.1
occ:1.00
 O A:GLY232 2.9 17.5 1.0
O A:GLY468 2.9 20.5 1.0
O A:GLY345 2.9 17.4 1.0
ND2 A:ASN239 3.0 19.2 1.0
C A:GLY468 3.2 20.5 1.0
C A:GLY345 3.3 17.4 1.0
CA A:GLY345 3.5 17.4 1.0
C A:GLY232 3.5 17.5 1.0
O A:ASN114 3.6 17.5 1.0
N A:SER469 3.7 19.3 1.0
CA A:GLY232 3.8 17.5 1.0
CA A:GLY468 3.9 20.5 1.0
CA A:SER469 4.0 19.3 1.0
O A:ASN467 4.0 19.0 1.0
N A:ALA346 4.1 16.1 1.0
CG A:ASN239 4.1 19.2 1.0
O A:CYS344 4.3 16.8 1.0
C A:ASN114 4.4 17.5 1.0
O A:THR113 4.4 18.9 1.0
N A:GLY233 4.6 17.4 1.0
OD1 A:ASN239 4.6 19.2 1.0
CA A:ALA346 4.7 16.1 1.0
N A:GLY345 4.7 17.4 1.0
CB A:ASN114 4.8 17.5 1.0
O A:ASN231 4.8 16.1 1.0
C A:ASN467 4.9 19.0 1.0
N A:GLY468 4.9 20.5 1.0
C A:CYS344 4.9 16.8 1.0
CB A:SER469 5.0 19.3 1.0

Reference:

J.M.Silberberg, C.Stock, L.Hielkema, R.A.Corey, J.Rheinberger, D.Wunnicke, V.R.A.Dubach, P.J.Stansfeld, I.Hanelt, C.Paulino. Inhibited Kdpfabc Transitions Into An E1 Off-Cycle State. Elife V. 11 2022.
ISSN: ESSN 2050-084X
PubMed: 36255052
DOI: 10.7554/ELIFE.80988
Page generated: Mon Aug 12 21:52:58 2024

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