Atomistry » Potassium » PDB 7wf3-7yzb » 7yif
Atomistry »
  Potassium »
    PDB 7wf3-7yzb »
      7yif »

Potassium in PDB 7yif: Human KCNH5 Pre-Open State 1

Potassium Binding Sites:

The binding sites of Potassium atom in the Human KCNH5 Pre-Open State 1 (pdb code 7yif). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 6 binding sites of Potassium where determined in the Human KCNH5 Pre-Open State 1, PDB code: 7yif:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6;

Potassium binding site 1 out of 6 in 7yif

Go back to Potassium Binding Sites List in 7yif
Potassium binding site 1 out of 6 in the Human KCNH5 Pre-Open State 1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Human KCNH5 Pre-Open State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1001

b:38.0
occ:1.00
 CD2 D:PHE464 4.6 9.7 1.0
CD2 A:PHE464 4.6 9.7 1.0
CD2 B:PHE464 4.6 9.7 1.0
CD2 C:PHE464 4.6 9.7 1.0
CG2 B:THR468 4.8 9.7 1.0
CG2 C:THR468 4.8 9.7 1.0
CG2 D:THR468 4.8 38.3 1.0
CG2 A:THR468 4.8 9.7 1.0
O A:PHE464 4.9 9.7 1.0
O D:PHE464 4.9 9.7 1.0
O B:PHE464 4.9 9.7 1.0
O C:PHE464 4.9 9.7 1.0

Potassium binding site 2 out of 6 in 7yif

Go back to Potassium Binding Sites List in 7yif
Potassium binding site 2 out of 6 in the Human KCNH5 Pre-Open State 1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Human KCNH5 Pre-Open State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1002

b:6.9
occ:1.00
 K A:K1003 3.6 6.1 1.0
OH D:TYR460 3.9 9.7 1.0
OH C:TYR460 3.9 9.7 1.0
OH A:TYR460 3.9 9.7 1.0
OH B:TYR460 3.9 9.7 1.0
OG1 B:THR432 4.2 9.7 1.0
OG1 C:THR432 4.2 9.7 1.0
OG1 A:THR432 4.2 9.7 1.0
OG1 D:THR432 4.2 9.7 1.0
CZ D:TYR460 4.7 9.7 1.0
CZ C:TYR460 4.7 9.7 1.0
CZ B:TYR460 4.7 9.7 1.0
CZ A:TYR460 4.7 9.7 1.0
CE2 D:TYR460 5.0 9.7 1.0
CE2 B:TYR460 5.0 9.7 1.0
CE2 A:TYR460 5.0 9.7 1.0
CE2 C:TYR460 5.0 9.7 1.0

Potassium binding site 3 out of 6 in 7yif

Go back to Potassium Binding Sites List in 7yif
Potassium binding site 3 out of 6 in the Human KCNH5 Pre-Open State 1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Human KCNH5 Pre-Open State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1003

b:6.1
occ:1.00
 O B:THR432 3.0 9.7 1.0
O C:THR432 3.0 9.7 1.0
O A:THR432 3.0 9.7 1.0
O D:THR432 3.0 9.7 1.0
OG1 B:THR432 3.4 9.7 1.0
OG1 C:THR432 3.4 9.7 1.0
OG1 A:THR432 3.4 9.7 1.0
OG1 D:THR432 3.4 9.7 1.0
K A:K1002 3.6 6.9 1.0
K A:K1004 3.6 9.7 1.0
CB B:THR432 3.7 9.7 1.0
CB A:THR432 3.7 9.7 1.0
CB C:THR432 3.7 9.7 1.0
CB D:THR432 3.7 9.7 1.0
C B:THR432 4.1 9.7 1.0
C C:THR432 4.1 9.7 1.0
C A:THR432 4.1 9.7 1.0
C D:THR432 4.1 9.7 1.0
CA B:THR432 4.6 9.7 1.0
CA C:THR432 4.6 9.7 1.0
CA A:THR432 4.6 9.7 1.0
CA D:THR432 4.6 9.7 1.0
CG2 B:THR432 5.0 9.7 1.0
CG2 C:THR432 5.0 9.7 1.0
CG2 A:THR432 5.0 9.7 1.0
CG2 D:THR432 5.0 9.7 1.0

Potassium binding site 4 out of 6 in 7yif

Go back to Potassium Binding Sites List in 7yif
Potassium binding site 4 out of 6 in the Human KCNH5 Pre-Open State 1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Human KCNH5 Pre-Open State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1004

b:9.7
occ:1.00
 O B:THR432 3.0 9.7 1.0
O C:THR432 3.0 9.7 1.0
O A:THR432 3.0 9.7 1.0
O D:THR432 3.0 9.7 1.0
O C:ILE433 3.0 9.7 1.0
O B:ILE433 3.0 9.7 1.0
O D:ILE433 3.0 9.7 1.0
O A:ILE433 3.0 9.7 1.0
K A:K1003 3.6 6.1 1.0
C B:ILE433 3.7 9.7 1.0
C C:ILE433 3.7 9.7 1.0
C A:ILE433 3.7 9.7 1.0
C D:ILE433 3.7 9.7 1.0
C B:THR432 3.9 9.7 1.0
C C:THR432 3.9 9.7 1.0
C A:THR432 3.9 9.7 1.0
C D:THR432 3.9 9.7 1.0
CA C:ILE433 4.0 9.7 1.0
CA D:ILE433 4.0 9.7 1.0
CA A:ILE433 4.0 9.7 1.0
CA B:ILE433 4.0 9.7 1.0
N C:ILE433 4.4 9.7 1.0
N B:ILE433 4.4 9.7 1.0
N A:ILE433 4.4 9.7 1.0
N D:ILE433 4.4 9.7 1.0
N B:GLY434 4.8 9.7 1.0
N C:GLY434 4.8 9.7 1.0
N D:GLY434 4.8 9.7 1.0
N A:GLY434 4.9 9.7 1.0

Potassium binding site 5 out of 6 in 7yif

Go back to Potassium Binding Sites List in 7yif
Potassium binding site 5 out of 6 in the Human KCNH5 Pre-Open State 1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Human KCNH5 Pre-Open State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1005

b:8.9
occ:1.00
 O C:GLY434 2.9 9.7 1.0
O B:GLY434 2.9 9.7 1.0
O D:GLY434 2.9 9.7 1.0
O A:GLY434 2.9 9.7 1.0
O C:PHE435 3.4 9.7 1.0
O D:PHE435 3.4 9.7 1.0
O A:PHE435 3.4 9.7 1.0
O B:PHE435 3.4 9.7 1.0
C C:PHE435 3.8 9.7 1.0
C D:PHE435 3.8 9.7 1.0
C B:PHE435 3.8 9.7 1.0
C A:PHE435 3.8 9.7 1.0
C C:GLY434 4.1 9.7 1.0
C D:GLY434 4.1 9.7 1.0
C B:GLY434 4.1 9.7 1.0
C A:GLY434 4.1 9.7 1.0
CA C:PHE435 4.3 9.7 1.0
CA D:PHE435 4.3 9.7 1.0
CA B:PHE435 4.3 9.7 1.0
CA A:PHE435 4.3 9.7 1.0
N C:GLY436 4.4 9.7 1.0
N B:GLY436 4.4 9.7 1.0
N D:GLY436 4.4 9.7 1.0
N A:GLY436 4.4 9.7 1.0
K A:K1006 4.6 14.8 1.0
CA C:GLY436 4.6 9.7 1.0
CA B:GLY436 4.6 9.7 1.0
CA D:GLY436 4.6 9.7 1.0
CA A:GLY436 4.6 9.7 1.0
N C:PHE435 4.7 9.7 1.0
N D:PHE435 4.7 9.7 1.0
N B:PHE435 4.7 9.7 1.0
N A:PHE435 4.7 9.7 1.0

Potassium binding site 6 out of 6 in 7yif

Go back to Potassium Binding Sites List in 7yif
Potassium binding site 6 out of 6 in the Human KCNH5 Pre-Open State 1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Human KCNH5 Pre-Open State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1006

b:14.8
occ:1.00
 O A:PHE435 4.2 9.7 1.0
O C:PHE435 4.2 9.7 1.0
O B:PHE435 4.2 9.7 1.0
O D:PHE435 4.2 9.7 1.0
O B:GLY436 4.3 9.7 1.0
O C:GLY436 4.3 9.7 1.0
O D:GLY436 4.3 9.7 1.0
O A:GLY436 4.3 9.7 1.0
O B:HOH1001 4.3 3.0 1.0
O A:HOH1101 4.3 2.4 1.0
O C:HOH1001 4.3 3.6 1.0
O D:HOH1001 4.3 3.0 1.0
K A:K1005 4.6 8.9 1.0
C B:GLY436 4.7 9.7 1.0
C C:GLY436 4.7 9.7 1.0
C D:GLY436 4.7 9.7 1.0
C A:GLY436 4.7 9.7 1.0
CA B:GLY436 4.9 9.7 1.0
CA C:GLY436 4.9 9.7 1.0
CA D:GLY436 4.9 9.7 1.0
CA A:GLY436 4.9 9.7 1.0

Reference:

M.Zhang, Y.Shan, D.Pei. Mechanism Underlying Delayed Rectifying in Human Voltage-Mediated Activation EAG2 Channel. Nat Commun V. 14 1470 2023.
ISSN: ESSN 2041-1723
PubMed: 36928654
DOI: 10.1038/S41467-023-37204-6
Page generated: Mon Aug 12 21:41:43 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy