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Potassium in PDB 7yid: Human KCNH5 Closed State 1

Potassium Binding Sites:

The binding sites of Potassium atom in the Human KCNH5 Closed State 1 (pdb code 7yid). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 6 binding sites of Potassium where determined in the Human KCNH5 Closed State 1, PDB code: 7yid:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6;

Potassium binding site 1 out of 6 in 7yid

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Potassium binding site 1 out of 6 in the Human KCNH5 Closed State 1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Human KCNH5 Closed State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1001

b:28.1
occ:1.00
 CB A:PHE464 4.8 11.4 1.0
CB C:PHE464 4.8 27.9 1.0
CB D:PHE464 4.8 24.8 1.0
CB B:PHE464 4.8 11.1 1.0
CD2 B:PHE464 4.8 11.1 1.0
CD2 A:PHE464 4.8 11.4 1.0
CD2 C:PHE464 4.8 27.9 1.0
CD2 D:PHE464 4.8 24.8 1.0
CG2 D:THR468 5.0 18.5 1.0
CG2 C:THR468 5.0 17.8 1.0
CG2 A:THR468 5.0 25.4 1.0
CG2 B:THR468 5.0 19.2 1.0

Potassium binding site 2 out of 6 in 7yid

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Potassium binding site 2 out of 6 in the Human KCNH5 Closed State 1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Human KCNH5 Closed State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1002

b:21.8
occ:1.00
 K A:K1003 2.9 11.4 1.0
OH A:TYR460 3.9 16.7 1.0
OH C:TYR460 3.9 13.1 1.0
OH D:TYR460 3.9 11.7 1.0
OH B:TYR460 3.9 15.1 1.0
OG1 D:THR432 4.0 19.0 1.0
OG1 A:THR432 4.0 19.0 1.0
OG1 B:THR432 4.0 19.0 1.0
OG1 C:THR432 4.0 19.0 1.0
CE2 A:TYR460 4.1 16.7 1.0
CE2 D:TYR460 4.1 11.7 1.0
CE2 C:TYR460 4.1 13.1 1.0
CE2 B:TYR460 4.1 15.1 1.0
CZ A:TYR460 4.4 16.7 1.0
CZ B:TYR460 4.4 15.1 1.0
CZ D:TYR460 4.4 11.7 1.0
CZ C:TYR460 4.4 13.1 1.0
CB D:THR432 4.9 19.0 1.0
CB A:THR432 4.9 19.0 1.0
CB C:THR432 4.9 19.0 1.0
CB B:THR432 4.9 19.0 1.0

Potassium binding site 3 out of 6 in 7yid

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Potassium binding site 3 out of 6 in the Human KCNH5 Closed State 1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Human KCNH5 Closed State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1003

b:11.4
occ:1.00
 K A:K1002 2.9 21.8 1.0
O D:THR432 3.1 19.0 1.0
O A:THR432 3.1 19.0 1.0
O B:THR432 3.1 19.0 1.0
O C:THR432 3.1 19.0 1.0
OG1 D:THR432 3.3 19.0 1.0
OG1 A:THR432 3.3 19.0 1.0
OG1 B:THR432 3.3 19.0 1.0
OG1 C:THR432 3.3 19.0 1.0
CB D:THR432 3.8 19.0 1.0
CB A:THR432 3.8 19.0 1.0
CB C:THR432 3.8 19.0 1.0
CB B:THR432 3.8 19.0 1.0
K A:K1004 3.9 19.0 1.0
C D:THR432 4.2 19.0 1.0
C A:THR432 4.2 19.0 1.0
C B:THR432 4.2 19.0 1.0
C C:THR432 4.2 19.0 1.0
CA D:THR432 4.7 19.0 1.0
CA A:THR432 4.7 19.0 1.0
CA B:THR432 4.7 19.0 1.0
CA C:THR432 4.7 19.0 1.0
CG2 D:THR432 5.0 19.0 1.0
CG2 A:THR432 5.0 19.0 1.0
CG2 B:THR432 5.0 19.0 1.0
CG2 C:THR432 5.0 19.0 1.0

Potassium binding site 4 out of 6 in 7yid

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Potassium binding site 4 out of 6 in the Human KCNH5 Closed State 1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Human KCNH5 Closed State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1004

b:19.0
occ:1.00
 O B:ILE433 2.9 19.0 1.0
O C:ILE433 2.9 19.0 1.0
O D:ILE433 2.9 19.0 1.0
O A:ILE433 2.9 19.0 1.0
O A:THR432 3.1 19.0 1.0
O D:THR432 3.1 19.0 1.0
O B:THR432 3.1 19.0 1.0
O C:THR432 3.1 19.0 1.0
C A:ILE433 3.7 19.0 1.0
C D:ILE433 3.7 19.0 1.0
C B:ILE433 3.7 19.0 1.0
C C:ILE433 3.7 19.0 1.0
K A:K1003 3.9 11.4 1.0
CA A:ILE433 3.9 19.0 1.0
CA D:ILE433 3.9 19.0 1.0
CA B:ILE433 3.9 19.0 1.0
CA C:ILE433 3.9 19.0 1.0
C D:THR432 3.9 19.0 1.0
C A:THR432 3.9 19.0 1.0
C B:THR432 3.9 19.0 1.0
C C:THR432 3.9 19.0 1.0
N A:ILE433 4.4 19.0 1.0
N D:ILE433 4.4 19.0 1.0
N B:ILE433 4.4 19.0 1.0
N C:ILE433 4.4 19.0 1.0
N A:GLY434 4.9 19.0 1.0
N D:GLY434 4.9 19.0 1.0
N B:GLY434 4.9 19.0 1.0
N C:GLY434 4.9 19.0 1.0

Potassium binding site 5 out of 6 in 7yid

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Potassium binding site 5 out of 6 in the Human KCNH5 Closed State 1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Human KCNH5 Closed State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1005

b:19.0
occ:1.00
 O D:PHE435 2.8 19.0 1.0
O B:PHE435 2.8 19.0 1.0
O C:PHE435 2.8 19.0 1.0
O A:PHE435 2.8 19.0 1.0
O B:GLY434 2.8 19.0 1.0
O A:GLY434 2.8 19.0 1.0
O D:GLY434 2.8 19.0 1.0
O C:GLY434 2.8 19.0 1.0
C B:PHE435 3.7 19.0 1.0
C D:PHE435 3.7 19.0 1.0
C A:PHE435 3.7 19.0 1.0
C C:PHE435 3.7 19.0 1.0
C B:GLY434 4.0 19.0 1.0
C A:GLY434 4.0 19.0 1.0
C D:GLY434 4.0 19.0 1.0
C C:GLY434 4.0 19.0 1.0
CA B:PHE435 4.1 19.0 1.0
CA D:PHE435 4.1 19.0 1.0
CA C:PHE435 4.1 19.0 1.0
CA A:PHE435 4.1 19.0 1.0
N B:PHE435 4.6 19.0 1.0
N D:PHE435 4.6 19.0 1.0
N A:PHE435 4.6 19.0 1.0
N C:PHE435 4.6 19.0 1.0
N D:GLY436 4.7 19.0 1.0
N B:GLY436 4.7 19.0 1.0
N A:GLY436 4.7 19.0 1.0
N C:GLY436 4.7 19.0 1.0
K A:K1006 5.0 13.8 1.0
O A:ILE433 5.0 19.0 1.0
O B:ILE433 5.0 19.0 1.0
O D:ILE433 5.0 19.0 1.0

Potassium binding site 6 out of 6 in 7yid

Go back to Potassium Binding Sites List in 7yid
Potassium binding site 6 out of 6 in the Human KCNH5 Closed State 1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Human KCNH5 Closed State 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1006

b:13.8
occ:1.00
 O A:PHE435 4.2 19.0 1.0
O B:PHE435 4.2 19.0 1.0
O C:PHE435 4.2 19.0 1.0
O D:PHE435 4.2 19.0 1.0
O B:HOH1001 4.3 11.3 1.0
O A:HOH1101 4.3 11.5 1.0
O D:HOH1001 4.3 11.5 1.0
O C:HOH1001 4.3 11.2 1.0
CA A:GLY436 4.8 19.0 1.0
CA B:GLY436 4.8 19.0 1.0
CA C:GLY436 4.8 19.0 1.0
CA D:GLY436 4.8 19.0 1.0
O D:GLY436 4.9 19.0 1.0
O B:GLY436 4.9 19.0 1.0
O A:GLY436 4.9 19.0 1.0
O C:GLY436 4.9 19.0 1.0
K A:K1005 5.0 19.0 1.0

Reference:

M.Zhang, Y.Shan, D.Pei. Mechanism Underlying Delayed Rectifying in Human Voltage-Mediated Activation EAG2 Channel. Nat Commun V. 14 1470 2023.
ISSN: ESSN 2041-1723
PubMed: 36928654
DOI: 10.1038/S41467-023-37204-6
Page generated: Mon Aug 12 21:40:37 2024

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