Potassium in PDB 7xx6: Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (Sticky- 169A Dna Fragment)

The structure of Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (Sticky- 169A Dna Fragment), PDB code: 7xx6 was solved by Z.Adhireksan, B.Qiuye, P.L.Lee, D.Sharma, S.Padavattan, C.A.Davey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.83 / 3.39
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	208.782, 102.37, 212.71, 90, 101.12, 90
R / Rfree (%)	22.7 / 29.6

The structure of Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (Sticky- 169A Dna Fragment) also contains other interesting chemical elements:

Calcium

(Ca)

47 atoms

The binding sites of Potassium atom in the Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (Sticky- 169A Dna Fragment) (pdb code 7xx6). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 6 binding sites of Potassium where determined in the Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (Sticky- 169A Dna Fragment), PDB code: 7xx6:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6;

Potassium binding site 1 out of 6 in the Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (Sticky- 169A Dna Fragment)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (Sticky- 169A Dna Fragment) within 5.0Å range: probe atom residue distance (Å) B Occ I:K109 b:141.3 occ:1.00 O2 I:DT-26 2.9 115.4 1.0 O4' I:DA-25 3.5 130.5 1.0 O4' J:DA28 3.7 116.0 1.0 C4' I:DA-25 3.7 122.9 1.0 C2 I:DT-26 4.1 126.2 1.0 C4' J:DA28 4.1 112.1 1.0 C2 J:DA26 4.3 122.8 1.0 C1' I:DA-25 4.3 132.5 1.0 N3 I:DA-25 4.3 134.6 1.0 C5' I:DA-25 4.5 113.5 1.0 C5' J:DA28 4.6 112.5 1.0 C1' I:DT-26 4.7 120.8 1.0 N2 J:DG27 4.7 147.1 1.0 O3' I:DA-25 4.9 103.7 1.0 N1 I:DT-26 4.9 127.7 1.0 C4 I:DA-25 4.9 146.7 1.0 N9 I:DA-25 4.9 144.2 1.0 N1 J:DA26 4.9 122.4 1.0 C3' I:DA-25 4.9 121.3 1.0 C1' J:DA28 4.9 127.4 1.0 N3 J:DG27 4.9 133.7 1.0 N3 I:DT-26 5.0 124.3 1.0 O4' I:DG-24 5.0 129.8 1.0

Potassium binding site 2 out of 6 in the Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (Sticky- 169A Dna Fragment)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (Sticky- 169A Dna Fragment) within 5.0Å range: probe atom residue distance (Å) B Occ T:K104 b:157.6 occ:1.00 O2 T:DT-26 2.9 167.6 1.0 O4' T:DA-25 3.4 172.1 1.0 C4' T:DA-25 3.6 173.5 1.0 C5' T:DA-25 4.0 171.4 1.0 C2 T:DT-26 4.1 168.1 1.0 O4' S:DA28 4.1 174.3 1.0 OP1 T:DG-24 4.4 176.5 1.0 C1' T:DA-25 4.4 189.6 1.0 C4' S:DA28 4.5 162.2 1.0 C1' T:DT-26 4.6 159.2 1.0 C1' S:DA28 4.8 187.8 1.0 N1 T:DT-26 4.8 161.3 1.0 N2 S:DG27 4.8 174.9 1.0 N3 T:DA-25 4.9 193.6 1.0 C3' T:DA-25 4.9 184.1 1.0 O4' T:DG-24 5.0 178.8 1.0

Potassium binding site 3 out of 6 in the Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (Sticky- 169A Dna Fragment)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (Sticky- 169A Dna Fragment) within 5.0Å range: probe atom residue distance (Å) B Occ T:K105 b:172.8 occ:1.00 O4' T:DA36 3.5 214.6 1.0 O2 T:DT35 3.6 209.9 1.0 C1' T:DA36 4.2 210.4 1.0 C4' T:DA36 4.2 223.9 1.0 N3 T:DA36 4.2 231.7 1.0 N2 S:DG-34 4.3 181.5 1.0 O4' S:DA-33 4.7 212.7 1.0 C2 T:DT35 4.8 210.9 1.0 C4 T:DA36 4.8 211.3 1.0 N9 T:DA36 4.8 203.7 1.0 N3 S:DG-34 4.8 213.9 1.0 C5' T:DC37 4.9 204.7 1.0

Potassium binding site 4 out of 6 in the Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (Sticky- 169A Dna Fragment)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (Sticky- 169A Dna Fragment) within 5.0Å range: probe atom residue distance (Å) B Occ T:K106 b:153.2 occ:1.00 O4' T:DG56 3.8 205.6 1.0 C4' T:DG56 4.2 222.2 1.0 C4' S:DG-53 4.4 201.5 1.0 C5' S:DG-53 4.6 205.7 1.0 O4' T:DC55 4.6 190.5 1.0 O4' S:DG-53 4.6 199.2 1.0 C5' T:DG56 4.6 227.2 1.0 C4' T:DC55 4.6 204.2 1.0 O3' T:DC55 5.0 215.2 1.0

Potassium binding site 5 out of 6 in the Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (Sticky- 169A Dna Fragment)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (Sticky- 169A Dna Fragment) within 5.0Å range: probe atom residue distance (Å) B Occ c:K108 b:143.3 occ:1.00 O2 c:DT-26 2.8 135.9 1.0 O4' c:DA-25 3.1 131.3 1.0 C4' c:DA-25 3.6 126.2 1.0 N3 c:DA-25 3.8 142.7 1.0 C2 c:DT-26 3.8 132.3 1.0 C1' c:DA-25 4.0 133.4 1.0 C2 d:DA26 4.1 123.8 1.0 O4' d:DA28 4.4 119.2 1.0 C4 c:DA-25 4.4 146.5 1.0 C5' c:DA-25 4.5 113.6 1.0 N9 c:DA-25 4.5 144.4 1.0 O4' c:DG-24 4.6 119.2 1.0 C1' c:DT-26 4.6 129.9 1.0 C2 c:DA-25 4.6 152.3 1.0 N3 c:DT-26 4.6 129.4 1.0 N1 c:DT-26 4.7 134.6 1.0 O3' c:DA-25 4.7 112.0 1.0 N2 d:DG27 4.7 140.6 1.0 N1 d:DA26 4.7 113.4 1.0 C3' c:DA-25 4.8 126.2 1.0 C4' d:DA28 4.8 109.8 1.0 N3 d:DA26 4.8 139.0 1.0

Potassium binding site 6 out of 6 in the Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (Sticky- 169A Dna Fragment)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (Sticky- 169A Dna Fragment) within 5.0Å range: probe atom residue distance (Å) B Occ d:K109 b:161.4 occ:1.00 C2 d:DA-35 3.9 158.2 1.0 N3 d:DA-35 4.1 149.1 1.0 O4' d:DG-34 4.4 156.2 1.0 N3 c:DA36 4.5 172.1 1.0 O2 c:DT35 4.5 197.9 1.0 N3 d:DG-34 4.6 137.3 1.0 C4' d:DG-34 4.7 139.2 1.0 O4' c:DA36 4.9 164.2 1.0 O4' d:DA-33 4.9 175.9 1.0 C1' d:DG-34 4.9 156.2 1.0 N2 d:DG-34 5.0 169.0 1.0

Z.Adhireksan, B.Qiuye, P.L.Lee, D.Sharma, S.Padavattan, C.A.Davey. Crystal Structure of Nucleosome-H1.0 Linker Histone Assembly (Sticky-169A Dna Fragment) To Be Published.