Potassium in PDB 7wsw: Cryo-Em Structure of the Potassium Channel AKT1 From Arabidopsis Thaliana
Potassium Binding Sites:
The binding sites of Potassium atom in the Cryo-Em Structure of the Potassium Channel AKT1 From Arabidopsis Thaliana
(pdb code 7wsw). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 3 binding sites of Potassium where determined in the
Cryo-Em Structure of the Potassium Channel AKT1 From Arabidopsis Thaliana, PDB code: 7wsw:
Jump to Potassium binding site number:
1;
2;
3;
Potassium binding site 1 out
of 3 in 7wsw
Go back to
Potassium Binding Sites List in 7wsw
Potassium binding site 1 out
of 3 in the Cryo-Em Structure of the Potassium Channel AKT1 From Arabidopsis Thaliana
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Cryo-Em Structure of the Potassium Channel AKT1 From Arabidopsis Thaliana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K902
b:58.4
occ:1.00
|
O
|
A:THR253
|
2.8
|
51.2
|
1.0
|
O
|
D:VAL254
|
2.8
|
51.7
|
1.0
|
O
|
B:VAL254
|
2.8
|
52.2
|
1.0
|
O
|
A:VAL254
|
2.8
|
50.4
|
1.0
|
O
|
C:VAL254
|
2.8
|
50.5
|
1.0
|
O
|
C:THR253
|
2.9
|
51.0
|
1.0
|
O
|
D:THR253
|
2.9
|
52.1
|
1.0
|
O
|
B:THR253
|
2.9
|
52.5
|
1.0
|
C
|
B:VAL254
|
3.6
|
52.2
|
1.0
|
C
|
D:VAL254
|
3.6
|
51.7
|
1.0
|
K
|
A:K903
|
3.6
|
48.9
|
1.0
|
C
|
C:VAL254
|
3.6
|
50.5
|
1.0
|
C
|
A:VAL254
|
3.6
|
50.4
|
1.0
|
C
|
A:THR253
|
3.9
|
51.2
|
1.0
|
C
|
D:THR253
|
3.9
|
52.1
|
1.0
|
C
|
B:THR253
|
3.9
|
52.5
|
1.0
|
C
|
C:THR253
|
3.9
|
51.0
|
1.0
|
CA
|
D:VAL254
|
4.0
|
51.7
|
1.0
|
CA
|
B:VAL254
|
4.0
|
52.2
|
1.0
|
CA
|
A:VAL254
|
4.0
|
50.4
|
1.0
|
CA
|
C:VAL254
|
4.0
|
50.5
|
1.0
|
N
|
D:VAL254
|
4.4
|
51.7
|
1.0
|
N
|
B:VAL254
|
4.4
|
52.2
|
1.0
|
N
|
A:VAL254
|
4.4
|
50.4
|
1.0
|
N
|
C:VAL254
|
4.4
|
50.5
|
1.0
|
N
|
B:GLY255
|
4.6
|
54.7
|
1.0
|
N
|
C:GLY255
|
4.6
|
54.2
|
1.0
|
N
|
D:GLY255
|
4.6
|
54.2
|
1.0
|
N
|
A:GLY255
|
4.6
|
54.1
|
1.0
|
|
Potassium binding site 2 out
of 3 in 7wsw
Go back to
Potassium Binding Sites List in 7wsw
Potassium binding site 2 out
of 3 in the Cryo-Em Structure of the Potassium Channel AKT1 From Arabidopsis Thaliana
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Cryo-Em Structure of the Potassium Channel AKT1 From Arabidopsis Thaliana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K903
b:48.9
occ:1.00
|
OG1
|
A:THR253
|
2.8
|
51.2
|
1.0
|
OG1
|
C:THR253
|
2.8
|
51.0
|
1.0
|
OG1
|
D:THR253
|
2.8
|
52.1
|
1.0
|
OG1
|
B:THR253
|
2.8
|
52.5
|
1.0
|
O
|
B:THR253
|
2.8
|
52.5
|
1.0
|
O
|
D:THR253
|
2.8
|
52.1
|
1.0
|
O
|
C:THR253
|
2.9
|
51.0
|
1.0
|
O
|
A:THR253
|
2.9
|
51.2
|
1.0
|
CB
|
A:THR253
|
3.6
|
51.2
|
1.0
|
CB
|
D:THR253
|
3.6
|
52.1
|
1.0
|
CB
|
C:THR253
|
3.6
|
51.0
|
1.0
|
CB
|
B:THR253
|
3.6
|
52.5
|
1.0
|
K
|
A:K902
|
3.6
|
58.4
|
1.0
|
C
|
B:THR253
|
3.9
|
52.5
|
1.0
|
C
|
D:THR253
|
3.9
|
52.1
|
1.0
|
C
|
C:THR253
|
3.9
|
51.0
|
1.0
|
C
|
A:THR253
|
3.9
|
51.2
|
1.0
|
CA
|
D:THR253
|
4.4
|
52.1
|
1.0
|
CA
|
B:THR253
|
4.4
|
52.5
|
1.0
|
CA
|
A:THR253
|
4.4
|
51.2
|
1.0
|
CA
|
C:THR253
|
4.4
|
51.0
|
1.0
|
O
|
C:THR252
|
4.8
|
50.3
|
1.0
|
O
|
A:THR252
|
4.8
|
50.4
|
1.0
|
CG2
|
A:THR253
|
4.8
|
51.2
|
1.0
|
CG2
|
C:THR253
|
4.8
|
51.0
|
1.0
|
CG2
|
D:THR253
|
4.8
|
52.1
|
1.0
|
CG2
|
B:THR253
|
4.8
|
52.5
|
1.0
|
O
|
B:THR252
|
4.8
|
51.8
|
1.0
|
O
|
D:THR252
|
4.8
|
51.3
|
1.0
|
|
Potassium binding site 3 out
of 3 in 7wsw
Go back to
Potassium Binding Sites List in 7wsw
Potassium binding site 3 out
of 3 in the Cryo-Em Structure of the Potassium Channel AKT1 From Arabidopsis Thaliana
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Cryo-Em Structure of the Potassium Channel AKT1 From Arabidopsis Thaliana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K904
b:74.4
occ:1.00
|
O
|
D:GLY255
|
2.8
|
54.2
|
1.0
|
O
|
B:GLY255
|
2.8
|
54.7
|
1.0
|
O
|
C:TYR256
|
2.8
|
56.1
|
1.0
|
O
|
A:TYR256
|
2.8
|
56.1
|
1.0
|
O
|
C:GLY255
|
2.9
|
54.2
|
1.0
|
O
|
A:GLY255
|
2.9
|
54.1
|
1.0
|
O
|
D:TYR256
|
2.9
|
56.1
|
1.0
|
O
|
B:TYR256
|
2.9
|
56.4
|
1.0
|
C
|
D:TYR256
|
3.5
|
56.1
|
1.0
|
C
|
B:TYR256
|
3.5
|
56.4
|
1.0
|
C
|
C:TYR256
|
3.6
|
56.1
|
1.0
|
C
|
A:TYR256
|
3.6
|
56.1
|
1.0
|
C
|
D:GLY255
|
4.0
|
54.2
|
1.0
|
C
|
B:GLY255
|
4.0
|
54.7
|
1.0
|
C
|
C:GLY255
|
4.0
|
54.2
|
1.0
|
C
|
A:GLY255
|
4.0
|
54.1
|
1.0
|
CA
|
D:TYR256
|
4.2
|
56.1
|
1.0
|
CA
|
B:TYR256
|
4.2
|
56.4
|
1.0
|
CA
|
A:TYR256
|
4.2
|
56.1
|
1.0
|
CA
|
C:TYR256
|
4.2
|
56.1
|
1.0
|
N
|
B:GLY257
|
4.2
|
61.2
|
1.0
|
N
|
D:GLY257
|
4.2
|
60.4
|
1.0
|
N
|
C:GLY257
|
4.4
|
60.6
|
1.0
|
N
|
A:GLY257
|
4.4
|
61.3
|
1.0
|
CA
|
B:GLY257
|
4.4
|
61.2
|
1.0
|
CA
|
D:GLY257
|
4.4
|
60.4
|
1.0
|
CA
|
C:GLY257
|
4.6
|
60.6
|
1.0
|
CA
|
A:GLY257
|
4.6
|
61.3
|
1.0
|
N
|
D:TYR256
|
4.6
|
56.1
|
1.0
|
N
|
B:TYR256
|
4.6
|
56.4
|
1.0
|
N
|
C:TYR256
|
4.6
|
56.1
|
1.0
|
N
|
A:TYR256
|
4.6
|
56.1
|
1.0
|
|
Reference:
Y.Lu,
M.Yu,
Y.Jia,
F.Yang,
Y.Zhang,
X.Xu,
X.Li,
F.Yang,
J.Lei,
Y.Wang,
G.Yang.
Structural Basis For the Activity Regulation of A Potassium Channel AKT1 From Arabidopsis. Nat Commun V. 13 5682 2022.
ISSN: ESSN 2041-1723
PubMed: 36167696
DOI: 10.1038/S41467-022-33420-8
Page generated: Mon Aug 12 21:31:09 2024
|