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Potassium in PDB 7wm2: Cryo-Em Structure of AKT1

Potassium Binding Sites:

The binding sites of Potassium atom in the Cryo-Em Structure of AKT1 (pdb code 7wm2). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 3 binding sites of Potassium where determined in the Cryo-Em Structure of AKT1, PDB code: 7wm2:
Jump to Potassium binding site number: 1; 2; 3;

Potassium binding site 1 out of 3 in 7wm2

Go back to Potassium Binding Sites List in 7wm2
Potassium binding site 1 out of 3 in the Cryo-Em Structure of AKT1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Cryo-Em Structure of AKT1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K902

b:30.0
occ:1.00
O A:VAL254 2.6 39.9 1.0
O D:VAL254 2.6 41.1 1.0
O B:VAL254 2.6 40.9 1.0
O C:VAL254 2.6 41.0 1.0
O B:THR253 3.1 44.0 1.0
O C:THR253 3.1 44.2 1.0
O A:THR253 3.1 43.0 1.0
O D:THR253 3.1 43.4 1.0
C D:VAL254 3.6 41.1 1.0
C A:VAL254 3.6 39.9 1.0
C C:VAL254 3.6 41.0 1.0
C B:VAL254 3.6 40.9 1.0
K A:K903 3.9 30.0 1.0
C B:THR253 4.1 44.0 1.0
CA D:VAL254 4.2 41.1 1.0
CA C:VAL254 4.2 41.0 1.0
C C:THR253 4.2 44.2 1.0
CA A:VAL254 4.2 39.9 1.0
CA B:VAL254 4.2 40.9 1.0
C A:THR253 4.2 43.0 1.0
C D:THR253 4.2 43.4 1.0
K A:K904 4.3 30.0 1.0
O D:GLY255 4.5 41.3 1.0
O B:GLY255 4.5 41.0 1.0
O A:GLY255 4.5 39.9 1.0
O C:GLY255 4.5 40.4 1.0
N D:GLY255 4.5 41.3 1.0
N A:GLY255 4.5 39.9 1.0
N B:GLY255 4.6 41.0 1.0
N C:GLY255 4.6 40.4 1.0
N C:VAL254 4.7 41.0 1.0
N D:VAL254 4.7 41.1 1.0
N A:VAL254 4.7 39.9 1.0
N B:VAL254 4.7 40.9 1.0
CA A:GLY255 4.8 39.9 1.0
CA D:GLY255 4.8 41.3 1.0
CA B:GLY255 4.8 41.0 1.0
CA C:GLY255 4.8 40.4 1.0
C D:GLY255 4.9 41.3 1.0
C A:GLY255 4.9 39.9 1.0
C B:GLY255 5.0 41.0 1.0
C C:GLY255 5.0 40.4 1.0

Potassium binding site 2 out of 3 in 7wm2

Go back to Potassium Binding Sites List in 7wm2
Potassium binding site 2 out of 3 in the Cryo-Em Structure of AKT1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Cryo-Em Structure of AKT1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K903

b:30.0
occ:1.00
OG1 B:THR253 2.6 44.0 1.0
O A:THR253 2.9 43.0 1.0
O C:THR253 2.9 44.2 1.0
O D:THR253 2.9 43.4 1.0
O B:THR253 2.9 44.0 1.0
OG1 C:THR253 3.1 44.2 1.0
OG1 D:THR253 3.2 43.4 1.0
OG1 A:THR253 3.2 43.0 1.0
CB B:THR253 3.5 44.0 1.0
CB C:THR253 3.5 44.2 1.0
CB A:THR253 3.5 43.0 1.0
CB D:THR253 3.6 43.4 1.0
C A:THR253 3.8 43.0 1.0
C C:THR253 3.8 44.2 1.0
C B:THR253 3.8 44.0 1.0
C D:THR253 3.8 43.4 1.0
K A:K902 3.9 30.0 1.0
CA B:THR253 4.3 44.0 1.0
CA C:THR253 4.3 44.2 1.0
CA A:THR253 4.3 43.0 1.0
CA D:THR253 4.4 43.4 1.0
CG2 B:THR253 4.7 44.0 1.0
CG2 C:THR253 4.7 44.2 1.0
CG2 A:THR253 4.8 43.0 1.0
CG2 D:THR253 4.8 43.4 1.0
N B:VAL254 4.8 40.9 1.0
N A:VAL254 4.8 39.9 1.0
N C:VAL254 4.8 41.0 1.0
N D:VAL254 4.8 41.1 1.0
O C:THR252 4.9 44.9 1.0
O B:THR252 4.9 45.7 1.0

Potassium binding site 3 out of 3 in 7wm2

Go back to Potassium Binding Sites List in 7wm2
Potassium binding site 3 out of 3 in the Cryo-Em Structure of AKT1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Cryo-Em Structure of AKT1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K904

b:30.0
occ:1.00
O A:GLY255 2.5 39.9 1.0
O D:GLY255 2.5 41.3 1.0
O B:GLY255 2.5 41.0 1.0
O C:GLY255 2.6 40.4 1.0
C A:GLY255 3.7 39.9 1.0
O B:TYR256 3.7 46.2 1.0
O C:TYR256 3.7 45.4 1.0
C D:GLY255 3.7 41.3 1.0
C B:GLY255 3.7 41.0 1.0
O D:TYR256 3.8 46.0 1.0
O A:TYR256 3.8 45.7 1.0
C C:GLY255 3.8 40.4 1.0
C C:TYR256 4.1 45.4 1.0
C A:TYR256 4.1 45.7 1.0
C B:TYR256 4.1 46.2 1.0
C D:TYR256 4.1 46.0 1.0
O C:VAL254 4.2 41.0 1.0
O A:VAL254 4.2 39.9 1.0
O B:VAL254 4.2 40.9 1.0
O D:VAL254 4.2 41.1 1.0
CA A:TYR256 4.3 45.7 1.0
CA C:TYR256 4.3 45.4 1.0
K A:K902 4.3 30.0 1.0
CA D:TYR256 4.3 46.0 1.0
CA B:TYR256 4.3 46.2 1.0
N A:TYR256 4.5 45.7 1.0
N D:TYR256 4.5 46.0 1.0
N C:TYR256 4.5 45.4 1.0
N B:TYR256 4.5 46.2 1.0
CA A:GLY255 4.7 39.9 1.0
CA D:GLY255 4.8 41.3 1.0
CA B:GLY255 4.8 41.0 1.0
CA C:GLY255 4.8 40.4 1.0
N A:GLY257 4.8 50.2 1.0
N C:GLY257 4.8 50.3 1.0
N D:GLY257 4.9 50.3 1.0
N B:GLY257 4.9 50.8 1.0

Reference:

L.Dongliang, Z.Zijie, Q.Yannan, T.Yuyue, S.Huaizong. Structural Basis For the Regulation Mechanism of A Hyperpolarization-Activated K+ Channel AKT1 By ATKC1 To Be Published.
Page generated: Mon Aug 12 21:30:31 2024

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