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Potassium in PDB 7wm1: Cryo-Em Structure of AKT1-ATKC1

Potassium Binding Sites:

The binding sites of Potassium atom in the Cryo-Em Structure of AKT1-ATKC1 (pdb code 7wm1). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 3 binding sites of Potassium where determined in the Cryo-Em Structure of AKT1-ATKC1, PDB code: 7wm1:
Jump to Potassium binding site number: 1; 2; 3;

Potassium binding site 1 out of 3 in 7wm1

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Potassium binding site 1 out of 3 in the Cryo-Em Structure of AKT1-ATKC1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Cryo-Em Structure of AKT1-ATKC1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K902

b:30.0
occ:1.00
O C:VAL254 2.6 4.6 1.0
O B:VAL290 2.6 0.9 1.0
O D:VAL290 2.6 0.4 1.0
O A:VAL254 2.6 3.4 1.0
O B:THR289 3.0 1.6 1.0
O D:THR289 3.0 3.9 1.0
O A:THR253 3.1 4.4 1.0
O C:THR253 3.2 5.0 1.0
K A:K903 3.3 30.0 1.0
C C:VAL254 3.5 4.6 1.0
C A:VAL254 3.6 3.4 1.0
C B:VAL290 3.6 0.9 1.0
C D:VAL290 3.6 0.4 1.0
CA C:VAL254 4.0 4.6 1.0
CA A:VAL254 4.0 3.4 1.0
CA B:VAL290 4.1 0.9 1.0
CA D:VAL290 4.1 0.4 1.0
C C:THR253 4.1 5.0 1.0
C B:THR289 4.1 1.6 1.0
C A:THR253 4.1 4.4 1.0
C D:THR289 4.1 3.9 1.0
K A:K904 4.3 30.0 1.0
O C:GLY255 4.5 32.6 1.0
N C:GLY255 4.6 32.6 1.0
N C:VAL254 4.6 4.6 1.0
O A:GLY255 4.6 32.6 1.0
N A:VAL254 4.6 3.4 1.0
N A:GLY255 4.6 32.6 1.0
N B:VAL290 4.6 0.9 1.0
N D:VAL290 4.6 0.4 1.0
N B:GLY291 4.6 0.6 1.0
N D:GLY291 4.6 0.1 1.0
O B:GLY291 4.7 0.6 1.0
O D:GLY291 4.7 0.1 1.0
CA C:GLY255 4.9 32.6 1.0
CA B:GLY291 4.9 0.6 1.0
CA A:GLY255 4.9 32.6 1.0
CA D:GLY291 5.0 0.1 1.0

Potassium binding site 2 out of 3 in 7wm1

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Potassium binding site 2 out of 3 in the Cryo-Em Structure of AKT1-ATKC1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Cryo-Em Structure of AKT1-ATKC1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K903

b:30.0
occ:1.00
O A:THR253 2.7 4.4 1.0
O C:THR253 2.7 5.0 1.0
O D:THR289 2.8 3.9 1.0
O B:THR289 2.8 1.6 1.0
OG1 A:THR253 2.9 4.4 1.0
OG1 C:THR253 3.0 5.0 1.0
K A:K902 3.3 30.0 1.0
CB A:THR253 3.7 4.4 1.0
OG1 D:THR289 3.7 3.9 1.0
OG1 B:THR289 3.7 1.6 1.0
CB B:THR289 3.7 1.6 1.0
CB D:THR289 3.7 3.9 1.0
C A:THR253 3.7 4.4 1.0
C C:THR253 3.7 5.0 1.0
CB C:THR253 3.8 5.0 1.0
C D:THR289 3.8 3.9 1.0
C B:THR289 3.8 1.6 1.0
CA A:THR253 4.3 4.4 1.0
CA C:THR253 4.4 5.0 1.0
CA B:THR289 4.4 1.6 1.0
CA D:THR289 4.4 3.9 1.0
N C:VAL254 4.7 4.6 1.0
N A:VAL254 4.7 3.4 1.0
N D:VAL290 4.8 0.4 1.0
N B:VAL290 4.8 0.9 1.0
CG2 B:THR289 4.8 1.6 1.0
CA C:VAL254 4.8 4.6 1.0
CG2 D:THR289 4.8 3.9 1.0
CA A:VAL254 4.9 3.4 1.0
CG2 A:THR253 4.9 4.4 1.0
CA D:VAL290 5.0 0.4 1.0

Potassium binding site 3 out of 3 in 7wm1

Go back to Potassium Binding Sites List in 7wm1
Potassium binding site 3 out of 3 in the Cryo-Em Structure of AKT1-ATKC1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Cryo-Em Structure of AKT1-ATKC1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K904

b:30.0
occ:1.00
O C:GLY255 2.4 32.6 1.0
O A:GLY255 2.4 32.6 1.0
O B:GLY291 2.4 0.6 1.0
O D:GLY291 2.4 0.1 1.0
O C:TYR256 3.3 3.4 1.0
O A:TYR256 3.3 3.2 1.0
C C:GLY255 3.6 32.6 1.0
C A:GLY255 3.6 32.6 1.0
C B:GLY291 3.6 0.6 1.0
C D:GLY291 3.6 0.1 1.0
O A:VAL254 3.9 3.4 1.0
O B:VAL290 3.9 0.9 1.0
C C:TYR256 3.9 3.4 1.0
O D:VAL290 3.9 0.4 1.0
O B:TYR292 3.9 1.0 1.0
O C:VAL254 3.9 4.6 1.0
O D:TYR292 3.9 1.8 1.0
C A:TYR256 3.9 3.2 1.0
C B:TYR292 4.1 1.0 1.0
CA C:TYR256 4.1 3.4 1.0
C D:TYR292 4.1 1.8 1.0
CA A:TYR256 4.2 3.2 1.0
CA B:TYR292 4.2 1.0 1.0
CA D:TYR292 4.3 1.8 1.0
K A:K902 4.3 30.0 1.0
N C:TYR256 4.3 3.4 1.0
N A:TYR256 4.3 3.2 1.0
N B:TYR292 4.4 1.0 1.0
N D:TYR292 4.4 1.8 1.0
CA B:GLY291 4.6 0.6 1.0
CA D:GLY291 4.6 0.1 1.0
CA A:GLY255 4.6 32.6 1.0
CA C:GLY255 4.6 32.6 1.0
N C:GLY257 4.9 4.3 1.0
N B:GLY293 4.9 1.9 1.0
N A:GLY257 4.9 5.2 1.0
N D:GLY293 4.9 32.6 1.0
C B:VAL290 4.9 0.9 1.0
C A:VAL254 4.9 3.4 1.0
C D:VAL290 4.9 0.4 1.0
C C:VAL254 5.0 4.6 1.0

Reference:

L.Dongliang, Z.Zijie, Q.Yannan, T.Yuyue, S.Huaizong. Structural Basis For the Regulation Mechanism of A Hyper Polarization-Activated K+ Channel AKT1 By ATKC1 To Be Published.
Page generated: Sat Aug 9 15:10:49 2025

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