Potassium in PDB 7wm1: Cryo-Em Structure of AKT1-ATKC1
Potassium Binding Sites:
The binding sites of Potassium atom in the Cryo-Em Structure of AKT1-ATKC1
(pdb code 7wm1). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 3 binding sites of Potassium where determined in the
Cryo-Em Structure of AKT1-ATKC1, PDB code: 7wm1:
Jump to Potassium binding site number:
1;
2;
3;
Potassium binding site 1 out
of 3 in 7wm1
Go back to
Potassium Binding Sites List in 7wm1
Potassium binding site 1 out
of 3 in the Cryo-Em Structure of AKT1-ATKC1
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Cryo-Em Structure of AKT1-ATKC1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K902
b:30.0
occ:1.00
|
O
|
C:VAL254
|
2.6
|
4.6
|
1.0
|
O
|
B:VAL290
|
2.6
|
0.9
|
1.0
|
O
|
D:VAL290
|
2.6
|
0.4
|
1.0
|
O
|
A:VAL254
|
2.6
|
3.4
|
1.0
|
O
|
B:THR289
|
3.0
|
1.6
|
1.0
|
O
|
D:THR289
|
3.0
|
3.9
|
1.0
|
O
|
A:THR253
|
3.1
|
4.4
|
1.0
|
O
|
C:THR253
|
3.2
|
5.0
|
1.0
|
K
|
A:K903
|
3.3
|
30.0
|
1.0
|
C
|
C:VAL254
|
3.5
|
4.6
|
1.0
|
C
|
A:VAL254
|
3.6
|
3.4
|
1.0
|
C
|
B:VAL290
|
3.6
|
0.9
|
1.0
|
C
|
D:VAL290
|
3.6
|
0.4
|
1.0
|
CA
|
C:VAL254
|
4.0
|
4.6
|
1.0
|
CA
|
A:VAL254
|
4.0
|
3.4
|
1.0
|
CA
|
B:VAL290
|
4.1
|
0.9
|
1.0
|
CA
|
D:VAL290
|
4.1
|
0.4
|
1.0
|
C
|
C:THR253
|
4.1
|
5.0
|
1.0
|
C
|
B:THR289
|
4.1
|
1.6
|
1.0
|
C
|
A:THR253
|
4.1
|
4.4
|
1.0
|
C
|
D:THR289
|
4.1
|
3.9
|
1.0
|
K
|
A:K904
|
4.3
|
30.0
|
1.0
|
O
|
C:GLY255
|
4.5
|
32.6
|
1.0
|
N
|
C:GLY255
|
4.6
|
32.6
|
1.0
|
N
|
C:VAL254
|
4.6
|
4.6
|
1.0
|
O
|
A:GLY255
|
4.6
|
32.6
|
1.0
|
N
|
A:VAL254
|
4.6
|
3.4
|
1.0
|
N
|
A:GLY255
|
4.6
|
32.6
|
1.0
|
N
|
B:VAL290
|
4.6
|
0.9
|
1.0
|
N
|
D:VAL290
|
4.6
|
0.4
|
1.0
|
N
|
B:GLY291
|
4.6
|
0.6
|
1.0
|
N
|
D:GLY291
|
4.6
|
0.1
|
1.0
|
O
|
B:GLY291
|
4.7
|
0.6
|
1.0
|
O
|
D:GLY291
|
4.7
|
0.1
|
1.0
|
CA
|
C:GLY255
|
4.9
|
32.6
|
1.0
|
CA
|
B:GLY291
|
4.9
|
0.6
|
1.0
|
CA
|
A:GLY255
|
4.9
|
32.6
|
1.0
|
CA
|
D:GLY291
|
5.0
|
0.1
|
1.0
|
|
Potassium binding site 2 out
of 3 in 7wm1
Go back to
Potassium Binding Sites List in 7wm1
Potassium binding site 2 out
of 3 in the Cryo-Em Structure of AKT1-ATKC1
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Cryo-Em Structure of AKT1-ATKC1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K903
b:30.0
occ:1.00
|
O
|
A:THR253
|
2.7
|
4.4
|
1.0
|
O
|
C:THR253
|
2.7
|
5.0
|
1.0
|
O
|
D:THR289
|
2.8
|
3.9
|
1.0
|
O
|
B:THR289
|
2.8
|
1.6
|
1.0
|
OG1
|
A:THR253
|
2.9
|
4.4
|
1.0
|
OG1
|
C:THR253
|
3.0
|
5.0
|
1.0
|
K
|
A:K902
|
3.3
|
30.0
|
1.0
|
CB
|
A:THR253
|
3.7
|
4.4
|
1.0
|
OG1
|
D:THR289
|
3.7
|
3.9
|
1.0
|
OG1
|
B:THR289
|
3.7
|
1.6
|
1.0
|
CB
|
B:THR289
|
3.7
|
1.6
|
1.0
|
CB
|
D:THR289
|
3.7
|
3.9
|
1.0
|
C
|
A:THR253
|
3.7
|
4.4
|
1.0
|
C
|
C:THR253
|
3.7
|
5.0
|
1.0
|
CB
|
C:THR253
|
3.8
|
5.0
|
1.0
|
C
|
D:THR289
|
3.8
|
3.9
|
1.0
|
C
|
B:THR289
|
3.8
|
1.6
|
1.0
|
CA
|
A:THR253
|
4.3
|
4.4
|
1.0
|
CA
|
C:THR253
|
4.4
|
5.0
|
1.0
|
CA
|
B:THR289
|
4.4
|
1.6
|
1.0
|
CA
|
D:THR289
|
4.4
|
3.9
|
1.0
|
N
|
C:VAL254
|
4.7
|
4.6
|
1.0
|
N
|
A:VAL254
|
4.7
|
3.4
|
1.0
|
N
|
D:VAL290
|
4.8
|
0.4
|
1.0
|
N
|
B:VAL290
|
4.8
|
0.9
|
1.0
|
CG2
|
B:THR289
|
4.8
|
1.6
|
1.0
|
CA
|
C:VAL254
|
4.8
|
4.6
|
1.0
|
CG2
|
D:THR289
|
4.8
|
3.9
|
1.0
|
CA
|
A:VAL254
|
4.9
|
3.4
|
1.0
|
CG2
|
A:THR253
|
4.9
|
4.4
|
1.0
|
CA
|
D:VAL290
|
5.0
|
0.4
|
1.0
|
|
Potassium binding site 3 out
of 3 in 7wm1
Go back to
Potassium Binding Sites List in 7wm1
Potassium binding site 3 out
of 3 in the Cryo-Em Structure of AKT1-ATKC1
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Cryo-Em Structure of AKT1-ATKC1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K904
b:30.0
occ:1.00
|
O
|
C:GLY255
|
2.4
|
32.6
|
1.0
|
O
|
A:GLY255
|
2.4
|
32.6
|
1.0
|
O
|
B:GLY291
|
2.4
|
0.6
|
1.0
|
O
|
D:GLY291
|
2.4
|
0.1
|
1.0
|
O
|
C:TYR256
|
3.3
|
3.4
|
1.0
|
O
|
A:TYR256
|
3.3
|
3.2
|
1.0
|
C
|
C:GLY255
|
3.6
|
32.6
|
1.0
|
C
|
A:GLY255
|
3.6
|
32.6
|
1.0
|
C
|
B:GLY291
|
3.6
|
0.6
|
1.0
|
C
|
D:GLY291
|
3.6
|
0.1
|
1.0
|
O
|
A:VAL254
|
3.9
|
3.4
|
1.0
|
O
|
B:VAL290
|
3.9
|
0.9
|
1.0
|
C
|
C:TYR256
|
3.9
|
3.4
|
1.0
|
O
|
D:VAL290
|
3.9
|
0.4
|
1.0
|
O
|
B:TYR292
|
3.9
|
1.0
|
1.0
|
O
|
C:VAL254
|
3.9
|
4.6
|
1.0
|
O
|
D:TYR292
|
3.9
|
1.8
|
1.0
|
C
|
A:TYR256
|
3.9
|
3.2
|
1.0
|
C
|
B:TYR292
|
4.1
|
1.0
|
1.0
|
CA
|
C:TYR256
|
4.1
|
3.4
|
1.0
|
C
|
D:TYR292
|
4.1
|
1.8
|
1.0
|
CA
|
A:TYR256
|
4.2
|
3.2
|
1.0
|
CA
|
B:TYR292
|
4.2
|
1.0
|
1.0
|
CA
|
D:TYR292
|
4.3
|
1.8
|
1.0
|
K
|
A:K902
|
4.3
|
30.0
|
1.0
|
N
|
C:TYR256
|
4.3
|
3.4
|
1.0
|
N
|
A:TYR256
|
4.3
|
3.2
|
1.0
|
N
|
B:TYR292
|
4.4
|
1.0
|
1.0
|
N
|
D:TYR292
|
4.4
|
1.8
|
1.0
|
CA
|
B:GLY291
|
4.6
|
0.6
|
1.0
|
CA
|
D:GLY291
|
4.6
|
0.1
|
1.0
|
CA
|
A:GLY255
|
4.6
|
32.6
|
1.0
|
CA
|
C:GLY255
|
4.6
|
32.6
|
1.0
|
N
|
C:GLY257
|
4.9
|
4.3
|
1.0
|
N
|
B:GLY293
|
4.9
|
1.9
|
1.0
|
N
|
A:GLY257
|
4.9
|
5.2
|
1.0
|
N
|
D:GLY293
|
4.9
|
32.6
|
1.0
|
C
|
B:VAL290
|
4.9
|
0.9
|
1.0
|
C
|
A:VAL254
|
4.9
|
3.4
|
1.0
|
C
|
D:VAL290
|
4.9
|
0.4
|
1.0
|
C
|
C:VAL254
|
5.0
|
4.6
|
1.0
|
|
Reference:
L.Dongliang,
Z.Zijie,
Q.Yannan,
T.Yuyue,
S.Huaizong.
Structural Basis For the Regulation Mechanism of A Hyper Polarization-Activated K+ Channel AKT1 By ATKC1 To Be Published.
Page generated: Mon Aug 12 21:30:31 2024
|