Potassium in PDB 7vek: Crystal Structure of Phytolacca Americana UGT3 with Capsaicin and Udp- 2FLUOROGLUCOSE

The structure of Crystal Structure of Phytolacca Americana UGT3 with Capsaicin and Udp- 2FLUOROGLUCOSE, PDB code: 7vek was solved by R.Maharjan, Y.Fukuda, T.Nakayama, T.Nakayama, H.Hamada, S.Ozaki, T.Inoue, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.62 / 2.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	94.276, 103.022, 109.648, 90, 90, 90
R / Rfree (%)	20.5 / 25.8

The structure of Crystal Structure of Phytolacca Americana UGT3 with Capsaicin and Udp- 2FLUOROGLUCOSE also contains other interesting chemical elements:

Fluorine

(F)

2 atoms

The binding sites of Potassium atom in the Crystal Structure of Phytolacca Americana UGT3 with Capsaicin and Udp- 2FLUOROGLUCOSE (pdb code 7vek). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of Phytolacca Americana UGT3 with Capsaicin and Udp- 2FLUOROGLUCOSE, PDB code: 7vek:

Potassium binding site 1 out of 1 in the Crystal Structure of Phytolacca Americana UGT3 with Capsaicin and Udp- 2FLUOROGLUCOSE


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Phytolacca Americana UGT3 with Capsaicin and Udp- 2FLUOROGLUCOSE within 5.0Å range: probe atom residue distance (Å) B Occ A:K502 b:47.9 occ:1.00 O B:GLU238 2.6 49.1 1.0 O A:GLU238 2.6 47.8 1.0 OAP A:O4B501 2.7 52.5 1.0 OAM A:O4B501 2.7 49.6 1.0 OAO A:O4B501 2.7 41.6 1.0 OAR A:O4B501 2.8 50.9 1.0 OAQ A:O4B501 3.0 39.5 1.0 OAN A:O4B501 3.2 39.2 1.0 CAJ A:O4B501 3.4 39.3 1.0 CAB A:O4B501 3.5 41.0 1.0 CAA A:O4B501 3.5 46.5 1.0 CAK A:O4B501 3.5 40.1 1.0 CAH A:O4B501 3.6 37.8 1.0 CAG A:O4B501 3.6 39.4 1.0 CAC A:O4B501 3.6 40.1 1.0 CAI A:O4B501 3.6 46.9 1.0 CAD A:O4B501 3.6 39.0 1.0 CAF A:O4B501 3.7 44.7 1.0 CAL A:O4B501 3.7 39.2 1.0 C B:GLU238 3.7 45.1 1.0 CAE A:O4B501 3.8 37.5 1.0 C A:GLU238 3.8 46.7 1.0 CA A:LEU239 4.5 41.3 1.0 CA B:LEU239 4.5 47.8 1.0 N B:LEU239 4.6 46.5 1.0 N A:LEU239 4.6 42.5 1.0 CA B:GLU238 4.6 40.0 1.0 C A:LEU239 4.7 43.4 1.0 CA A:GLU238 4.7 41.1 1.0 C B:LEU239 4.7 50.9 1.0 O B:LYS237 4.8 53.2 1.0 O A:LYS237 4.9 58.8 1.0

R.Maharjan, Y.Fukuda, T.Nakayama, T.Nakayama, H.Hamada, S.I.Ozaki, T.Inoue. Structural Basis For Substrate Recognition in the Phytolacca Americana Glycosyltransferase PAGT3. Acta Crystallogr D Struct V. 78 379 2022BIOL.
ISSN: ISSN 2059-7983
PubMed: 35234151
DOI: 10.1107/S2059798322000869