Potassium in PDB 7suu: Crystal Structure of Mouse Cadherin-23 EC25-26

Protein crystallography data

The structure of Crystal Structure of Mouse Cadherin-23 EC25-26, PDB code: 7suu was solved by M.D.Boyer, J.S.Sandhu, M.Sotomayor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.06 / 2.25
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 80.237, 88.488, 206.783, 90, 90, 90
R / Rfree (%) 19.8 / 25.3

Other elements in 7suu:

The structure of Crystal Structure of Mouse Cadherin-23 EC25-26 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Calcium (Ca) 14 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Mouse Cadherin-23 EC25-26 (pdb code 7suu). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the Crystal Structure of Mouse Cadherin-23 EC25-26, PDB code: 7suu:
Jump to Potassium binding site number: 1; 2; 3; 4;

Potassium binding site 1 out of 4 in 7suu

Go back to Potassium Binding Sites List in 7suu
Potassium binding site 1 out of 4 in the Crystal Structure of Mouse Cadherin-23 EC25-26


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Mouse Cadherin-23 EC25-26 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K2907

b:46.5
occ:1.00
O A:THR2713 2.3 33.4 1.0
O A:HOH3078 2.4 35.3 1.0
O A:VAL2724 2.4 34.1 1.0
O A:HOH3031 2.6 30.8 1.0
C A:THR2713 3.5 32.2 1.0
C A:VAL2724 3.6 31.0 1.0
OG1 A:THR2713 3.7 37.9 1.0
N A:THR2713 4.2 34.5 1.0
CA A:THR2713 4.3 30.8 1.0
N A:VAL2714 4.4 30.4 1.0
CA A:VAL2724 4.4 28.6 1.0
CA A:VAL2714 4.5 30.6 1.0
N A:GLY2725 4.6 30.2 1.0
O A:LEU2723 4.6 36.3 1.0
OE2 A:GLU2814 4.6 61.0 1.0
CB A:THR2713 4.7 32.6 1.0
CA A:GLY2725 4.7 32.0 1.0

Potassium binding site 2 out of 4 in 7suu

Go back to Potassium Binding Sites List in 7suu
Potassium binding site 2 out of 4 in the Crystal Structure of Mouse Cadherin-23 EC25-26


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Mouse Cadherin-23 EC25-26 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K2909

b:49.1
occ:1.00
O B:GLY2748 2.3 47.0 1.0
O B:SER2777 2.4 29.2 1.0
O B:HOH3104 2.5 39.8 1.0
O B:HOH3099 2.6 39.3 1.0
C B:GLY2748 3.5 43.1 1.0
C B:SER2777 3.7 36.7 1.0
CA B:GLY2748 4.0 35.5 1.0
N B:SER2777 4.1 36.5 1.0
CA B:SER2777 4.4 39.2 1.0
O B:HOH3011 4.4 37.3 1.0
CB B:SER2777 4.5 42.2 1.0
N B:ASP2749 4.6 46.6 1.0
N B:PHE2778 4.7 34.1 1.0
CA B:PHE2778 4.8 31.3 1.0
CB B:PHE2778 4.9 34.8 1.0
CA B:ASP2749 5.0 49.8 1.0

Potassium binding site 3 out of 4 in 7suu

Go back to Potassium Binding Sites List in 7suu
Potassium binding site 3 out of 4 in the Crystal Structure of Mouse Cadherin-23 EC25-26


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of Mouse Cadherin-23 EC25-26 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K2910

b:77.6
occ:1.00
OD1 B:ASN2584 2.7 31.4 1.0
CG B:ASN2584 3.5 34.5 1.0
ND2 B:ASN2584 3.6 32.5 1.0
O B:ASP2583 4.5 30.8 1.0
CB B:ASN2584 4.9 33.7 1.0

Potassium binding site 4 out of 4 in 7suu

Go back to Potassium Binding Sites List in 7suu
Potassium binding site 4 out of 4 in the Crystal Structure of Mouse Cadherin-23 EC25-26


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of Mouse Cadherin-23 EC25-26 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K2911

b:44.3
occ:1.00
OE1 B:GLN2651 2.4 32.2 1.0
O B:ARG2606 2.4 31.1 1.0
OD1 B:ASN2608 2.5 36.1 1.0
CD B:GLN2651 3.4 38.2 1.0
CG B:ASN2608 3.6 37.3 1.0
C B:ARG2606 3.6 28.4 1.0
CG B:GLN2651 4.0 33.1 1.0
ND2 B:ASN2608 4.1 37.5 1.0
CB B:ARG2606 4.2 32.0 1.0
N B:ASN2608 4.3 33.3 1.0
CA B:ARG2606 4.4 32.1 1.0
C B:SER2607 4.4 34.1 1.0
O B:HOH3090 4.5 38.0 1.0
N B:SER2607 4.5 28.7 1.0
NE2 B:GLN2651 4.6 36.7 1.0
CA B:SER2607 4.6 30.0 1.0
CB B:ASN2608 4.7 35.0 1.0
CA B:ASN2608 4.7 35.0 1.0
O B:HOH3003 4.7 35.9 1.0
CB B:GLN2651 4.8 31.4 1.0

Reference:

M.D.Boyer, J.S.Sandhu, M.Sotomayor. Crystal Structure of Mouse Cadherin-23 EC25-26 To Be Published.
Page generated: Wed Apr 5 10:18:08 2023

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