Atomistry » Potassium » PDB 7r3b-7sgg » 7scm
Atomistry »
  Potassium »
    PDB 7r3b-7sgg »
      7scm »

Potassium in PDB 7scm: Crystal Structure of Ancestral Amniote Cadherin-23 EC1-2

Protein crystallography data

The structure of Crystal Structure of Ancestral Amniote Cadherin-23 EC1-2, PDB code: 7scm was solved by C.R.Nisler, M.Sotomayor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.93 / 2.27
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 73.109, 73.109, 381.934, 90, 90, 120
R / Rfree (%) 19 / 23.8

Other elements in 7scm:

The structure of Crystal Structure of Ancestral Amniote Cadherin-23 EC1-2 also contains other interesting chemical elements:

Sodium (Na) 3 atoms
Calcium (Ca) 6 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Ancestral Amniote Cadherin-23 EC1-2 (pdb code 7scm). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Crystal Structure of Ancestral Amniote Cadherin-23 EC1-2, PDB code: 7scm:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 7scm

Go back to Potassium Binding Sites List in 7scm
Potassium binding site 1 out of 2 in the Crystal Structure of Ancestral Amniote Cadherin-23 EC1-2


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Ancestral Amniote Cadherin-23 EC1-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K304

b:62.4
occ:1.00
O A:HOH436 2.4 23.3 1.0
O A:HOH434 2.5 35.4 1.0
O A:GLY140 2.5 28.0 1.0
O A:HOH502 2.5 33.6 1.0
O A:ASP133 2.7 27.6 1.0
O A:HOH499 2.7 32.3 1.0
C A:GLY140 3.5 26.5 1.0
C A:ASP133 3.8 26.2 1.0
CA A:GLY140 4.0 26.6 1.0
O A:HOH403 4.0 38.9 1.0
N A:ASP133 4.2 23.1 1.0
O A:ASP135 4.2 32.3 1.0
CA A:ASP133 4.4 25.6 1.0
CB A:ASP133 4.6 23.8 1.0
N A:SER141 4.7 29.2 1.0
N A:PRO134 4.8 27.6 1.0
CA A:PRO134 5.0 26.0 1.0

Potassium binding site 2 out of 2 in 7scm

Go back to Potassium Binding Sites List in 7scm
Potassium binding site 2 out of 2 in the Crystal Structure of Ancestral Amniote Cadherin-23 EC1-2


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Ancestral Amniote Cadherin-23 EC1-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K304

b:64.4
occ:1.00
O B:GLY140 2.4 29.5 1.0
O B:HOH404 2.6 30.5 1.0
O B:HOH466 2.7 42.6 1.0
O B:HOH461 2.7 25.6 1.0
O B:ASP133 2.8 30.4 1.0
C B:GLY140 3.5 29.4 1.0
C B:ASP133 3.9 31.4 1.0
O B:HOH442 3.9 35.8 1.0
CA B:GLY140 3.9 30.8 1.0
N B:ASP133 4.3 27.1 1.0
O B:ASP135 4.4 36.6 1.0
CA B:ASP133 4.5 28.3 1.0
CB B:ASP133 4.5 24.6 1.0
N B:SER141 4.6 28.7 1.0
O B:HOH454 4.7 39.6 1.0
N B:PRO134 5.0 32.3 1.0
CA B:SER141 5.0 31.2 1.0

Reference:

C.R.Nisler, M.Sotomayor. Crystal Structure of Ancestral Amniote Cadherin-23 EC1-2 To Be Published.
Page generated: Mon Aug 12 20:59:26 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy