Potassium in PDB 7qf6: N(5)-Hydroxyornithine:Cis-Anhydromevalonyl Coenzyme A-N(5)- Transacylase Sidf

Protein crystallography data

The structure of N(5)-Hydroxyornithine:Cis-Anhydromevalonyl Coenzyme A-N(5)- Transacylase Sidf, PDB code: 7qf6 was solved by T.Poonsiri, N.Demitri, B.Stefano, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 174.82 / 1.87
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 80.274, 80.839, 179.84, 101.17, 91.67, 117.25
R / Rfree (%) 17.2 / 20.9

Potassium Binding Sites:

The binding sites of Potassium atom in the N(5)-Hydroxyornithine:Cis-Anhydromevalonyl Coenzyme A-N(5)- Transacylase Sidf (pdb code 7qf6). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the N(5)-Hydroxyornithine:Cis-Anhydromevalonyl Coenzyme A-N(5)- Transacylase Sidf, PDB code: 7qf6:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 7qf6

Go back to Potassium Binding Sites List in 7qf6
Potassium binding site 1 out of 2 in the N(5)-Hydroxyornithine:Cis-Anhydromevalonyl Coenzyme A-N(5)- Transacylase Sidf


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of N(5)-Hydroxyornithine:Cis-Anhydromevalonyl Coenzyme A-N(5)- Transacylase Sidf within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K505

b:75.4
occ:1.00
O C:HOH837 3.3 51.9 1.0
O C:HOH740 3.9 40.3 1.0
CB B:PRO96 4.2 27.6 1.0
CG B:PRO164 4.3 34.5 1.0
O B:HOH667 4.5 37.6 1.0
CD B:PRO164 4.8 32.1 1.0
OG B:SER100 4.8 28.3 1.0
CA B:PRO96 5.0 28.4 1.0
CB B:PRO164 5.0 32.3 1.0

Potassium binding site 2 out of 2 in 7qf6

Go back to Potassium Binding Sites List in 7qf6
Potassium binding site 2 out of 2 in the N(5)-Hydroxyornithine:Cis-Anhydromevalonyl Coenzyme A-N(5)- Transacylase Sidf


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of N(5)-Hydroxyornithine:Cis-Anhydromevalonyl Coenzyme A-N(5)- Transacylase Sidf within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K503

b:45.0
occ:1.00
CB D:PRO387 3.8 27.7 1.0
CB E:PRO387 3.9 22.8 1.0
CG D:PRO387 4.1 23.5 1.0
CG E:PRO387 4.2 22.0 1.0
CG E:PRO222 4.3 27.7 1.0
CG E:ARG388 4.3 19.6 1.0
NE E:ARG388 4.3 22.9 1.0
CG D:PRO222 4.3 27.9 1.0
CG D:ARG388 4.4 20.1 1.0
OE2 E:GLU386 4.4 23.5 1.0
CD E:ARG388 4.4 23.4 1.0
CD E:PRO387 4.4 22.4 1.0
CB E:PRO222 4.5 25.1 1.0
NE D:ARG388 4.5 20.8 1.0
CD D:PRO387 4.6 20.2 1.0
CD D:ARG388 4.7 21.8 1.0
O D:HOH822 4.7 39.1 1.0
OE2 D:GLU386 4.8 22.1 1.0
CB D:PRO222 4.8 22.6 1.0
N E:ARG388 4.8 19.2 1.0
CA D:PRO387 4.9 22.1 1.0
N D:ARG388 4.9 19.8 1.0
CZ E:ARG388 5.0 25.9 1.0
CA E:PRO387 5.0 22.0 1.0

Reference:

T.Poonsiri, N.Demitri, B.Stefano. N(5)-Hydroxyornithine:Cis-Anhydromevalonyl Coenzyme A-N(5)-Transacylase Sidf To Be Published.
Page generated: Wed Apr 5 09:49:36 2023

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