Potassium in PDB 7pwf: Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution

The structure of Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution also contains other interesting chemical elements:

Magnesium

(Mg)

37 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 160; Page 17, Binding sites: 161 - 170; Page 18, Binding sites: 171 - 180; Page 19, Binding sites: 181 - 190; Page 20, Binding sites: 191 - 200; Page 21, Binding sites: 201 - 210; Page 22, Binding sites: 211 - 220; Page 23, Binding sites: 221 - 230; Page 24, Binding sites: 231 - 240; Page 25, Binding sites: 241 - 250; Page 26, Binding sites: 251 - 260; Page 27, Binding sites: 261 - 266;

Binding sites:

The binding sites of Potassium atom in the Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution (pdb code 7pwf). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 266 binding sites of Potassium where determined in the Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution, PDB code: 7pwf:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 266 in the Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ d:K201 b:47.0 occ:1.00 O d:LEU136 3.2 16.5 1.0 O2' 2:G1122 4.0 10.7 1.0 C d:LEU136 4.1 21.3 1.0

Potassium binding site 2 out of 266 in the Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ N:K201 b:30.1 occ:1.00 O N:MET4 2.9 9.4 1.0 O N:ARG3 3.0 24.4 1.0 O N:SER6 3.2 16.6 1.0 C N:MET4 3.5 6.2 1.0 N N:SER6 3.9 9.6 1.0 C N:ARG3 4.0 6.3 1.0 N N:HIS5 4.1 4.6 1.0 CA N:MET4 4.1 3.4 1.0 C N:SER6 4.2 8.8 1.0 MG 2:MG1766 4.3 7.2 1.0 CA N:HIS5 4.4 2.2 1.0 OP1 2:C508 4.5 6.6 1.0 N N:MET4 4.6 4.4 1.0 C N:HIS5 4.6 6.4 1.0 CA N:SER6 4.7 7.2 1.0 OP1 2:U720 4.8 0.0 1.0

Potassium binding site 3 out of 266 in the Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ N:K202 b:40.2 occ:1.00 NH1 N:ARG127 2.8 11.6 1.0 CD N:ARG127 3.2 3.5 1.0 CZ N:ARG127 3.7 12.8 1.0 NE N:ARG127 3.8 10.3 1.0 O N:ARG124 4.1 2.7 1.0 CA N:ARG124 4.1 0.7 1.0 CG N:ARG127 4.2 1.9 1.0 CB N:ARG127 4.2 1.1 1.0 CB N:ARG124 4.3 0.0 1.0 CG N:ARG124 4.3 4.8 1.0 C N:ARG124 4.6 1.1 1.0 OP1 2:U510 4.7 2.9 1.0 NH2 N:ARG127 4.9 13.9 1.0 OP2 2:A718 4.9 0.0 1.0

Potassium binding site 4 out of 266 in the Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ N:K203 b:35.5 occ:1.00 K 2:K1607 2.8 58.6 1.0 NH1 N:ARG127 2.9 11.6 1.0 NH2 N:ARG127 3.2 13.9 1.0 OP1 2:U510 3.2 2.9 1.0 CZ N:ARG127 3.5 12.8 1.0 O3' 2:G509 3.9 0.5 1.0 CG N:ARG124 4.0 4.8 1.0 P 2:U510 4.2 3.0 1.0 CB N:HIS123 4.2 0.0 1.0 C5' 2:U510 4.4 0.5 1.0 N N:ARG124 4.5 2.0 1.0 C N:HIS123 4.7 0.0 1.0 CA N:ARG124 4.8 0.7 1.0 NE N:ARG127 4.8 10.3 1.0 O5' 2:U510 4.8 3.5 1.0 CD N:ARG124 5.0 7.1 1.0

Potassium binding site 5 out of 266 in the Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ N:K204 b:44.0 occ:1.00 OG N:SER120 3.1 9.2 1.0 O N:ILE116 3.2 11.3 1.0 N N:SER120 3.6 3.6 1.0 CG2 N:ILE116 3.8 2.8 1.0 CB N:GLU119 4.0 0.0 1.0 C N:ILE116 4.0 7.8 1.0 CA N:SER120 4.0 3.3 1.0 CB N:SER120 4.1 2.8 1.0 CA N:ILE116 4.1 3.1 1.0 C N:GLU119 4.1 2.3 1.0 CB N:ILE116 4.5 2.7 1.0 CA N:GLU119 4.6 0.9 1.0 O2' 2:C508 4.7 5.3 1.0 OE2 N:GLU119 4.7 20.6 1.0 O N:GLU119 4.8 3.3 1.0

Potassium binding site 6 out of 266 in the Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ N:K205 b:44.2 occ:1.00 OE2 N:GLU119 3.1 20.6 1.0 K N:K206 3.1 42.8 1.0 CG1 N:ILE116 3.2 8.5 1.0 CA N:ILE116 3.8 3.1 1.0 N N:ILE116 3.9 4.9 1.0 CB N:ILE116 4.1 2.7 1.0 CG N:LEU115 4.1 8.1 1.0 CD N:GLU119 4.3 14.1 1.0 C N:LEU115 4.3 7.6 1.0 CD1 N:ILE116 4.4 9.6 1.0 CD2 N:LEU115 4.4 7.4 1.0 CB N:LEU115 4.6 5.4 1.0 O N:LYS112 4.6 12.0 1.0 O N:LEU115 4.6 12.1 1.0 CG2 N:ILE116 4.9 2.8 1.0 NH1 N:ARG99 5.0 13.3 1.0

Potassium binding site 7 out of 266 in the Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ N:K206 b:42.8 occ:1.00 K N:K205 3.1 44.2 1.0 O N:LYS112 3.1 12.0 1.0 CB N:LYS112 3.3 6.4 1.0 CA N:LYS112 3.5 5.5 1.0 C N:LYS112 3.6 7.1 1.0 CG N:LYS112 3.7 11.1 1.0 CD N:LYS112 3.7 19.1 1.0 CG1 N:ILE116 3.9 8.5 1.0 CD1 N:ILE116 4.1 9.6 1.0 CD2 N:LEU115 4.1 7.4 1.0 CB N:LEU115 4.3 5.4 1.0 CG N:LEU115 4.5 8.1 1.0 N N:ILE116 4.7 4.9 1.0 N N:PHE113 4.8 6.8 1.0 N N:LYS112 4.9 6.5 1.0 CE N:LYS112 5.0 18.2 1.0

Potassium binding site 8 out of 266 in the Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ N:K207 b:38.0 occ:1.00 O N:THR152 3.1 24.9 1.0 C N:THR152 3.3 28.5 1.0 CE1 N:TYR89 4.2 12.2 1.0 CD1 N:TYR89 4.3 9.7 1.0 O N:LEU149 4.4 27.3 1.0 CG1 N:ILE84 4.5 13.7 1.0 CA N:THR152 4.5 32.6 1.0 O N:LEU150 4.7 24.4 1.0 CB N:ILE84 4.7 11.7 1.0 N N:THR152 4.8 28.1 1.0

Potassium binding site 9 out of 266 in the Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ S:K201 b:19.9 occ:1.00 O S:LYS25 3.0 19.7 1.0 CG2 S:VAL27 3.8 10.6 1.0 C S:VAL26 3.9 13.4 1.0 N S:VAL27 3.9 12.2 1.0 C S:LYS25 3.9 14.2 1.0 OP2 2:G1222 4.0 11.8 1.0 OP1 2:G1222 4.1 10.1 1.0 CA S:VAL26 4.2 12.9 1.0 O S:VAL26 4.2 19.6 1.0 CG S:ARG57 4.3 21.2 1.0 CA S:VAL27 4.4 14.0 1.0 O S:LYS56 4.4 32.7 1.0 N S:VAL26 4.5 12.4 1.0 P 2:G1222 4.5 18.0 1.0 CD S:LYS25 4.6 17.7 1.0 CA S:ARG57 4.6 21.3 1.0 NZ S:LYS25 4.7 12.6 1.0 CB S:VAL27 4.7 10.0 1.0 CE S:LYS25 4.7 17.3 1.0 CA S:LYS25 4.9 12.5 1.0 CB S:ARG57 5.0 25.4 1.0

Potassium binding site 10 out of 266 in the Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Cryo-Em Structure of Small Subunit of Giardia Lamblia Ribosome at 2.9 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ S:K202 b:30.0 occ:1.00 CE S:LYS25 3.2 17.3 1.0 NZ S:LYS25 3.8 12.6 1.0 O Z:ARG50 4.2 7.5 1.0 CD S:LYS25 4.4 17.7 1.0 CG S:LYS25 4.6 16.2 1.0 OG Z:SER52 4.6 0.0 1.0 C Z:ARG50 4.9 6.6 1.0 N Z:SER52 4.9 3.9 1.0 CB Z:ARG50 5.0 3.8 1.0

D.G.Hiregange, A.Rivalta, T.Bose, E.Breiner-Goldstein, S.Samiya, G.Cimicata, L.Kulakova, E.Zimmerman, A.Bashan, O.Herzberg, A.Yonath. Cryo-Em Structure of the Ancient Eukaryotic Ribosome From the Human Parasite Giardia Lamblia. Nucleic Acids Res. V. 50 1770 2022.
ISSN: ESSN 1362-4962
PubMed: 35100413
DOI: 10.1093/NAR/GKAC046