Potassium in PDB 7nwd: Three-Quartet C-KIT2 G-Quadruplex Stabilized By A Pyrene Conjugate
Potassium Binding Sites:
The binding sites of Potassium atom in the Three-Quartet C-KIT2 G-Quadruplex Stabilized By A Pyrene Conjugate
(pdb code 7nwd). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the
Three-Quartet C-KIT2 G-Quadruplex Stabilized By A Pyrene Conjugate, PDB code: 7nwd:
Jump to Potassium binding site number:
1;
2;
Potassium binding site 1 out
of 2 in 7nwd
Go back to
Potassium Binding Sites List in 7nwd
Potassium binding site 1 out
of 2 in the Three-Quartet C-KIT2 G-Quadruplex Stabilized By A Pyrene Conjugate
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Three-Quartet C-KIT2 G-Quadruplex Stabilized By A Pyrene Conjugate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K101
b:0.0
occ:1.00
|
O6
|
A:DG4
|
2.6
|
0.0
|
1.0
|
O6
|
A:DG8
|
2.7
|
0.0
|
1.0
|
O6
|
A:DG16
|
2.7
|
0.0
|
1.0
|
O6
|
A:DG15
|
2.7
|
0.0
|
1.0
|
O6
|
A:DG20
|
2.7
|
0.0
|
1.0
|
O6
|
A:DG3
|
2.8
|
0.0
|
1.0
|
O6
|
A:DG19
|
2.8
|
0.0
|
1.0
|
O6
|
A:DG7
|
3.0
|
0.0
|
1.0
|
H1
|
A:DG4
|
3.5
|
0.0
|
1.0
|
H1
|
A:DG20
|
3.5
|
0.0
|
1.0
|
H1
|
A:DG15
|
3.5
|
0.0
|
1.0
|
C6
|
A:DG15
|
3.6
|
0.0
|
1.0
|
H1
|
A:DG19
|
3.6
|
0.0
|
1.0
|
C6
|
A:DG19
|
3.6
|
0.0
|
1.0
|
K
|
A:K102
|
3.6
|
0.0
|
1.0
|
C6
|
A:DG3
|
3.6
|
0.0
|
1.0
|
C6
|
A:DG4
|
3.6
|
0.0
|
1.0
|
H1
|
A:DG3
|
3.7
|
0.0
|
1.0
|
C6
|
A:DG16
|
3.8
|
0.0
|
1.0
|
H1
|
A:DG8
|
3.8
|
0.0
|
1.0
|
C6
|
A:DG20
|
3.8
|
0.0
|
1.0
|
C6
|
A:DG8
|
3.8
|
0.0
|
1.0
|
H1
|
A:DG7
|
3.8
|
0.0
|
1.0
|
C6
|
A:DG7
|
3.8
|
0.0
|
1.0
|
H1
|
A:DG16
|
3.8
|
0.0
|
1.0
|
N1
|
A:DG15
|
3.9
|
0.0
|
1.0
|
N1
|
A:DG4
|
4.0
|
0.0
|
1.0
|
N1
|
A:DG19
|
4.0
|
0.0
|
1.0
|
N1
|
A:DG20
|
4.0
|
0.0
|
1.0
|
N1
|
A:DG3
|
4.1
|
0.0
|
1.0
|
N1
|
A:DG7
|
4.2
|
0.0
|
1.0
|
N1
|
A:DG16
|
4.2
|
0.0
|
1.0
|
N1
|
A:DG8
|
4.2
|
0.0
|
1.0
|
H3
|
A:DT21
|
4.6
|
0.0
|
1.0
|
C5
|
A:DG19
|
4.7
|
0.0
|
1.0
|
C5
|
A:DG3
|
4.7
|
0.0
|
1.0
|
C5
|
A:DG15
|
4.8
|
0.0
|
1.0
|
C5
|
A:DG7
|
4.9
|
0.0
|
1.0
|
C5
|
A:DG4
|
5.0
|
0.0
|
1.0
|
C5
|
A:DG16
|
5.0
|
0.0
|
1.0
|
|
Potassium binding site 2 out
of 2 in 7nwd
Go back to
Potassium Binding Sites List in 7nwd
Potassium binding site 2 out
of 2 in the Three-Quartet C-KIT2 G-Quadruplex Stabilized By A Pyrene Conjugate
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Three-Quartet C-KIT2 G-Quadruplex Stabilized By A Pyrene Conjugate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K102
b:0.0
occ:1.00
|
O6
|
A:DG6
|
2.6
|
0.0
|
1.0
|
O6
|
A:DG14
|
2.6
|
0.0
|
1.0
|
O6
|
A:DG18
|
2.7
|
0.0
|
1.0
|
O6
|
A:DG2
|
2.7
|
0.0
|
1.0
|
O6
|
A:DG19
|
2.8
|
0.0
|
1.0
|
O6
|
A:DG15
|
2.8
|
0.0
|
1.0
|
O6
|
A:DG3
|
2.9
|
0.0
|
1.0
|
O6
|
A:DG7
|
2.9
|
0.0
|
1.0
|
H1
|
A:DG6
|
3.4
|
0.0
|
1.0
|
H1
|
A:DG2
|
3.5
|
0.0
|
1.0
|
H1
|
A:DG18
|
3.5
|
0.0
|
1.0
|
C6
|
A:DG6
|
3.5
|
0.0
|
1.0
|
H1
|
A:DG14
|
3.5
|
0.0
|
1.0
|
C6
|
A:DG2
|
3.6
|
0.0
|
1.0
|
C6
|
A:DG18
|
3.6
|
0.0
|
1.0
|
C6
|
A:DG14
|
3.6
|
0.0
|
1.0
|
K
|
A:K101
|
3.6
|
0.0
|
1.0
|
H1
|
A:DG15
|
3.7
|
0.0
|
1.0
|
H1
|
A:DG3
|
3.7
|
0.0
|
1.0
|
H1
|
A:DG19
|
3.7
|
0.0
|
1.0
|
H1
|
A:DG7
|
3.7
|
0.0
|
1.0
|
C6
|
A:DG15
|
3.7
|
0.0
|
1.0
|
C6
|
A:DG19
|
3.8
|
0.0
|
1.0
|
N1
|
A:DG6
|
3.8
|
0.0
|
1.0
|
C6
|
A:DG3
|
3.8
|
0.0
|
1.0
|
N1
|
A:DG2
|
3.9
|
0.0
|
1.0
|
N1
|
A:DG18
|
3.9
|
0.0
|
1.0
|
C6
|
A:DG7
|
3.9
|
0.0
|
1.0
|
N1
|
A:DG14
|
4.0
|
0.0
|
1.0
|
N1
|
A:DG15
|
4.1
|
0.0
|
1.0
|
N1
|
A:DG19
|
4.2
|
0.0
|
1.0
|
N1
|
A:DG3
|
4.2
|
0.0
|
1.0
|
N1
|
A:DG7
|
4.2
|
0.0
|
1.0
|
C12
|
A:UTB1
|
4.5
|
0.0
|
1.0
|
C11
|
A:UTB1
|
4.6
|
0.0
|
1.0
|
C14
|
A:UTB1
|
4.7
|
0.0
|
1.0
|
C5
|
A:DG6
|
4.8
|
0.0
|
1.0
|
C5
|
A:DG2
|
4.8
|
0.0
|
1.0
|
C5
|
A:DG18
|
4.8
|
0.0
|
1.0
|
C13
|
A:UTB1
|
4.8
|
0.0
|
1.0
|
C5
|
A:DG14
|
4.9
|
0.0
|
1.0
|
H19
|
A:UTB1
|
4.9
|
0.0
|
1.0
|
C5
|
A:DG15
|
4.9
|
0.0
|
1.0
|
|
Reference:
K.Peterkova,
I.Durnik,
R.Marek,
J.Plavec,
P.Podbevsek.
C-KIT2 G-Quadruplex Stabilized Via A Covalent Probe: Exploring G-Quartet Asymmetry To Be Published.
Page generated: Mon Aug 12 19:34:14 2024
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