Potassium in PDB 7nwd: Three-Quartet C-KIT2 G-Quadruplex Stabilized By A Pyrene Conjugate

The binding sites of Potassium atom in the Three-Quartet C-KIT2 G-Quadruplex Stabilized By A Pyrene Conjugate (pdb code 7nwd). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Three-Quartet C-KIT2 G-Quadruplex Stabilized By A Pyrene Conjugate, PDB code: 7nwd:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in the Three-Quartet C-KIT2 G-Quadruplex Stabilized By A Pyrene Conjugate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Three-Quartet C-KIT2 G-Quadruplex Stabilized By A Pyrene Conjugate within 5.0Å range: probe atom residue distance (Å) B Occ A:K101 b:0.0 occ:1.00 O6 A:DG4 2.6 0.0 1.0 O6 A:DG8 2.7 0.0 1.0 O6 A:DG16 2.7 0.0 1.0 O6 A:DG15 2.7 0.0 1.0 O6 A:DG20 2.7 0.0 1.0 O6 A:DG3 2.8 0.0 1.0 O6 A:DG19 2.8 0.0 1.0 O6 A:DG7 3.0 0.0 1.0 H1 A:DG4 3.5 0.0 1.0 H1 A:DG20 3.5 0.0 1.0 H1 A:DG15 3.5 0.0 1.0 C6 A:DG15 3.6 0.0 1.0 H1 A:DG19 3.6 0.0 1.0 C6 A:DG19 3.6 0.0 1.0 K A:K102 3.6 0.0 1.0 C6 A:DG3 3.6 0.0 1.0 C6 A:DG4 3.6 0.0 1.0 H1 A:DG3 3.7 0.0 1.0 C6 A:DG16 3.8 0.0 1.0 H1 A:DG8 3.8 0.0 1.0 C6 A:DG20 3.8 0.0 1.0 C6 A:DG8 3.8 0.0 1.0 H1 A:DG7 3.8 0.0 1.0 C6 A:DG7 3.8 0.0 1.0 H1 A:DG16 3.8 0.0 1.0 N1 A:DG15 3.9 0.0 1.0 N1 A:DG4 4.0 0.0 1.0 N1 A:DG19 4.0 0.0 1.0 N1 A:DG20 4.0 0.0 1.0 N1 A:DG3 4.1 0.0 1.0 N1 A:DG7 4.2 0.0 1.0 N1 A:DG16 4.2 0.0 1.0 N1 A:DG8 4.2 0.0 1.0 H3 A:DT21 4.6 0.0 1.0 C5 A:DG19 4.7 0.0 1.0 C5 A:DG3 4.7 0.0 1.0 C5 A:DG15 4.8 0.0 1.0 C5 A:DG7 4.9 0.0 1.0 C5 A:DG4 5.0 0.0 1.0 C5 A:DG16 5.0 0.0 1.0

Potassium binding site 2 out of 2 in the Three-Quartet C-KIT2 G-Quadruplex Stabilized By A Pyrene Conjugate


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Three-Quartet C-KIT2 G-Quadruplex Stabilized By A Pyrene Conjugate within 5.0Å range: probe atom residue distance (Å) B Occ A:K102 b:0.0 occ:1.00 O6 A:DG6 2.6 0.0 1.0 O6 A:DG14 2.6 0.0 1.0 O6 A:DG18 2.7 0.0 1.0 O6 A:DG2 2.7 0.0 1.0 O6 A:DG19 2.8 0.0 1.0 O6 A:DG15 2.8 0.0 1.0 O6 A:DG3 2.9 0.0 1.0 O6 A:DG7 2.9 0.0 1.0 H1 A:DG6 3.4 0.0 1.0 H1 A:DG2 3.5 0.0 1.0 H1 A:DG18 3.5 0.0 1.0 C6 A:DG6 3.5 0.0 1.0 H1 A:DG14 3.5 0.0 1.0 C6 A:DG2 3.6 0.0 1.0 C6 A:DG18 3.6 0.0 1.0 C6 A:DG14 3.6 0.0 1.0 K A:K101 3.6 0.0 1.0 H1 A:DG15 3.7 0.0 1.0 H1 A:DG3 3.7 0.0 1.0 H1 A:DG19 3.7 0.0 1.0 H1 A:DG7 3.7 0.0 1.0 C6 A:DG15 3.7 0.0 1.0 C6 A:DG19 3.8 0.0 1.0 N1 A:DG6 3.8 0.0 1.0 C6 A:DG3 3.8 0.0 1.0 N1 A:DG2 3.9 0.0 1.0 N1 A:DG18 3.9 0.0 1.0 C6 A:DG7 3.9 0.0 1.0 N1 A:DG14 4.0 0.0 1.0 N1 A:DG15 4.1 0.0 1.0 N1 A:DG19 4.2 0.0 1.0 N1 A:DG3 4.2 0.0 1.0 N1 A:DG7 4.2 0.0 1.0 C12 A:UTB1 4.5 0.0 1.0 C11 A:UTB1 4.6 0.0 1.0 C14 A:UTB1 4.7 0.0 1.0 C5 A:DG6 4.8 0.0 1.0 C5 A:DG2 4.8 0.0 1.0 C5 A:DG18 4.8 0.0 1.0 C13 A:UTB1 4.8 0.0 1.0 C5 A:DG14 4.9 0.0 1.0 H19 A:UTB1 4.9 0.0 1.0 C5 A:DG15 4.9 0.0 1.0

K.Peterkova, I.Durnik, R.Marek, J.Plavec, P.Podbevsek. C-KIT2 G-Quadruplex Stabilized Via A Covalent Probe: Exploring G-Quartet Asymmetry To Be Published.