Atomistry » Potassium » PDB 7loo-7ny1 » 7ney
Atomistry »
  Potassium »
    PDB 7loo-7ny1 »
      7ney »

Potassium in PDB 7ney: Structure of T. Atroviride Fdc Wild-Type (Tafdc) in Complex with Prfmn

Enzymatic activity of Structure of T. Atroviride Fdc Wild-Type (Tafdc) in Complex with Prfmn

All present enzymatic activity of Structure of T. Atroviride Fdc Wild-Type (Tafdc) in Complex with Prfmn:
4.1.1.102;

Protein crystallography data

The structure of Structure of T. Atroviride Fdc Wild-Type (Tafdc) in Complex with Prfmn, PDB code: 7ney was solved by A.Saaret, D.Leys, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 63.19 / 1.74
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 74.212, 74.212, 346.561, 90, 90, 120
R / Rfree (%) 18.2 / 21.5

Other elements in 7ney:

The structure of Structure of T. Atroviride Fdc Wild-Type (Tafdc) in Complex with Prfmn also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Structure of T. Atroviride Fdc Wild-Type (Tafdc) in Complex with Prfmn (pdb code 7ney). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the Structure of T. Atroviride Fdc Wild-Type (Tafdc) in Complex with Prfmn, PDB code: 7ney:
Jump to Potassium binding site number: 1; 2; 3; 4;

Potassium binding site 1 out of 4 in 7ney

Go back to Potassium Binding Sites List in 7ney
Potassium binding site 1 out of 4 in the Structure of T. Atroviride Fdc Wild-Type (Tafdc) in Complex with Prfmn


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Structure of T. Atroviride Fdc Wild-Type (Tafdc) in Complex with Prfmn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K602

b:34.3
occ:1.00
 OE2 A:GLU243 2.8 19.3 1.0
O2P A:4LU601 2.9 18.5 1.0
O A:MET235 3.0 18.2 1.0
O A:ALA232 3.0 18.7 1.0
O5' A:4LU601 3.0 18.8 1.0
O A:TRP179 3.1 16.6 1.0
O A:SER233 3.2 18.2 1.0
P A:4LU601 3.4 19.0 1.0
O A:HOH720 3.4 18.0 1.0
C A:SER233 3.6 18.2 1.0
O3P A:4LU601 3.6 20.7 1.0
CD A:GLU243 3.6 20.4 1.0
MN A:MN604 3.7 21.4 1.0
CA A:SER233 3.8 16.4 1.0
CG A:GLU243 3.8 21.2 1.0
C A:MET235 4.0 18.6 1.0
C A:ALA232 4.0 16.6 1.0
N A:MET235 4.1 17.1 1.0
O4' A:4LU601 4.1 22.4 1.0
C4' A:4LU601 4.2 20.0 1.0
C5' A:4LU601 4.2 18.2 1.0
C A:TRP179 4.3 16.0 1.0
CB A:SER180 4.4 17.7 1.0
N A:SER233 4.4 17.0 1.0
N A:SER234 4.4 17.0 1.0
CA A:SER180 4.5 15.3 1.0
CA A:MET235 4.7 18.4 1.0
OE1 A:GLU243 4.7 18.3 1.0
C A:SER234 4.8 18.5 1.0
OD1 A:ASN178 4.8 19.8 1.0
O1P A:4LU601 4.9 20.1 1.0
N A:ILE237 4.9 20.0 1.0
N A:SER180 4.9 16.4 1.0
N A:PRO236 5.0 18.3 1.0
CG1 A:ILE237 5.0 24.4 1.0

Potassium binding site 2 out of 4 in 7ney

Go back to Potassium Binding Sites List in 7ney
Potassium binding site 2 out of 4 in the Structure of T. Atroviride Fdc Wild-Type (Tafdc) in Complex with Prfmn


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Structure of T. Atroviride Fdc Wild-Type (Tafdc) in Complex with Prfmn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K603

b:30.3
occ:1.00
 O A:ARG431 2.6 20.7 1.0
O A:LEU471 2.6 23.8 1.0
OD2 A:ASP437 2.8 23.2 1.0
O A:ASP469 2.8 20.2 1.0
O A:HOH903 2.8 27.4 1.0
OD2 A:ASP469 3.3 30.1 1.0
O A:HOH741 3.4 28.9 1.0
CG A:ASP437 3.4 24.3 1.0
C A:LEU471 3.7 23.6 1.0
CG A:ASP469 3.7 30.0 1.0
C A:ASP469 3.8 21.6 1.0
C A:ARG431 3.8 16.8 1.0
OD1 A:ASP469 4.0 27.7 1.0
CB A:ASP437 4.0 23.2 1.0
OD1 B:ASN457 4.0 38.3 1.0
OD1 A:ASP437 4.1 26.3 1.0
N A:LEU471 4.1 22.8 1.0
CA A:CYS432 4.2 18.2 1.0
O A:HOH758 4.3 25.1 1.0
CA A:LEU472 4.4 24.6 1.0
N A:LEU472 4.4 23.7 1.0
CB A:ASP469 4.5 22.7 1.0
N A:CYS432 4.5 18.7 1.0
CA A:ALA470 4.5 20.4 1.0
N A:ALA470 4.5 19.4 1.0
C A:ALA470 4.6 19.7 1.0
CA A:LEU471 4.6 23.3 1.0
CA A:ASP469 4.8 22.2 1.0
N A:ARG433 4.8 18.2 1.0
C A:LEU472 4.9 26.2 1.0
CA A:ARG431 4.9 16.8 1.0
N A:THR473 5.0 26.5 1.0

Potassium binding site 3 out of 4 in 7ney

Go back to Potassium Binding Sites List in 7ney
Potassium binding site 3 out of 4 in the Structure of T. Atroviride Fdc Wild-Type (Tafdc) in Complex with Prfmn


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Structure of T. Atroviride Fdc Wild-Type (Tafdc) in Complex with Prfmn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K602

b:28.1
occ:1.00
 O B:LEU471 2.6 21.9 1.0
O B:ARG431 2.6 18.2 1.0
O B:HOH829 2.8 25.3 1.0
O B:ASP469 2.8 20.9 1.0
OD2 B:ASP437 2.8 21.8 1.0
O B:HOH758 3.3 23.0 1.0
CG B:ASP437 3.4 23.8 1.0
OD2 B:ASP469 3.5 27.0 1.0
C B:LEU471 3.7 18.6 1.0
CG B:ASP469 3.8 24.3 1.0
C B:ARG431 3.8 18.3 1.0
C B:ASP469 3.8 20.2 1.0
CB B:ASP437 4.0 21.7 1.0
N B:LEU471 4.0 19.9 1.0
OD1 B:ASP437 4.1 26.3 1.0
OD1 B:ASP469 4.1 23.3 1.0
O B:HOH746 4.2 22.2 1.0
CA B:CYS432 4.2 18.2 1.0
OD1 A:ASN457 4.3 31.7 1.0
CA B:LEU472 4.4 21.5 1.0
N B:LEU472 4.4 18.9 1.0
CB B:ASP469 4.4 21.1 1.0
N B:CYS432 4.5 18.2 1.0
CA B:ALA470 4.5 19.6 1.0
C B:ALA470 4.5 17.6 1.0
CA B:LEU471 4.5 21.1 1.0
N B:ALA470 4.5 19.8 1.0
N B:ARG433 4.8 17.9 1.0
CA B:ASP469 4.8 20.0 1.0
CA B:ARG431 4.9 17.5 1.0
C B:LEU472 4.9 22.4 1.0
O B:HOH779 5.0 32.5 1.0

Potassium binding site 4 out of 4 in 7ney

Go back to Potassium Binding Sites List in 7ney
Potassium binding site 4 out of 4 in the Structure of T. Atroviride Fdc Wild-Type (Tafdc) in Complex with Prfmn


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Structure of T. Atroviride Fdc Wild-Type (Tafdc) in Complex with Prfmn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K603

b:37.1
occ:1.00
 O B:MET235 2.8 21.6 1.0
OE2 B:GLU243 2.8 21.9 1.0
O B:ALA232 2.9 24.1 1.0
O5' B:4LU601 3.0 21.0 1.0
O B:SER233 3.1 21.8 1.0
O2P B:4LU601 3.1 23.1 1.0
O B:TRP179 3.2 20.0 1.0
O B:HOH720 3.4 19.6 1.0
C B:SER233 3.5 24.5 1.0
P B:4LU601 3.6 20.1 1.0
CD B:GLU243 3.6 24.4 1.0
O3P B:4LU601 3.6 21.6 1.0
CG B:GLU243 3.8 25.6 1.0
CA B:SER233 3.8 22.2 1.0
MN B:MN604 3.8 23.2 1.0
C B:MET235 3.9 22.8 1.0
C B:ALA232 3.9 22.2 1.0
N B:MET235 4.1 19.3 1.0
O4' B:4LU601 4.1 25.9 1.0
C4' B:4LU601 4.2 22.5 1.0
C5' B:4LU601 4.2 22.5 1.0
N B:SER234 4.3 22.0 1.0
N B:SER233 4.3 22.1 1.0
C B:TRP179 4.4 18.7 1.0
CB B:SER180 4.5 22.2 1.0
CA B:MET235 4.5 20.7 1.0
CA B:SER180 4.6 20.4 1.0
OE1 B:GLU243 4.7 20.6 1.0
C B:SER234 4.8 22.3 1.0
CG1 B:ILE237 4.8 25.2 1.0
N B:PRO236 4.8 23.5 1.0
N B:ILE237 4.9 24.6 1.0
CA B:SER234 5.0 21.6 1.0
OD1 B:ASN178 5.0 24.0 1.0
N B:SER180 5.0 20.4 1.0

Reference:

A.Saaret, B.Villiers, F.Stricher, M.Anissimova, M.Cadillon, R.Spiess, S.Hay, D.Leys. Directed Evolution of Prenylated Fmn-Dependent Fdc Supports Efficient in Vivo Isobutene Production Nat Commun 2021.
ISSN: ESSN 2041-1723
Page generated: Mon Aug 12 19:29:44 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy