Potassium in PDB 7mkt: Crystal Structure of R(Gu)11G-Nmm Complex

The structure of Crystal Structure of R(Gu)11G-Nmm Complex, PDB code: 7mkt was solved by C.A.Bingman, S.Roschdi, Y.Nomura, S.E.Butcher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	21.61 / 1.97
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	42.475, 42.483, 21.607, 90, 90.09, 90
R / Rfree (%)	26.9 / 29.1

The binding sites of Potassium atom in the Crystal Structure of R(Gu)11G-Nmm Complex (pdb code 7mkt). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 6 binding sites of Potassium where determined in the Crystal Structure of R(Gu)11G-Nmm Complex, PDB code: 7mkt:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6;

Potassium binding site 1 out of 6 in the Crystal Structure of R(Gu)11G-Nmm Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of R(Gu)11G-Nmm Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:K102 b:54.9 occ:1.00 O6 A:G9 2.7 55.2 1.0 O6 A:G1 2.7 56.9 1.0 O6 A:G13 2.7 54.9 1.0 O6 A:G7 2.8 60.1 1.0 O6 A:G21 2.8 60.3 1.0 O6 A:G15 2.9 54.5 1.0 O6 A:G19 2.9 60.7 1.0 O6 A:G3 3.0 52.5 1.0 K A:K103 3.2 67.7 1.0 H1 A:G21 3.5 55.2 1.0 H1 A:G1 3.5 56.0 1.0 C6 A:G1 3.6 54.6 1.0 C6 A:G21 3.6 56.5 1.0 H1 A:G13 3.7 52.6 1.0 C6 A:G13 3.7 52.0 1.0 C6 A:G9 3.7 54.9 1.0 H1 A:G7 3.7 53.2 1.0 H1 A:G19 3.7 58.1 1.0 C6 A:G7 3.7 54.9 1.0 C6 A:G19 3.8 59.1 1.0 C6 A:G15 3.8 53.8 1.0 H1 A:G15 3.8 52.3 1.0 H1 A:G9 3.8 55.3 1.0 N1 A:G21 3.9 54.3 1.0 N1 A:G1 3.9 55.6 1.0 C6 A:G3 3.9 55.1 1.0 H1 A:G3 3.9 56.5 1.0 N1 A:G13 4.0 52.2 1.0 N1 A:G7 4.1 52.1 1.0 N1 A:G19 4.1 57.5 1.0 H11 A:MMP101 4.1 56.1 0.8 N1 A:G9 4.2 54.1 1.0 N1 A:G15 4.2 51.2 1.0 H13 A:MMP101 4.3 56.0 0.8 N1 A:G3 4.3 55.3 1.0 C1 A:MMP101 4.7 57.8 0.8 C5 A:G1 4.8 57.2 1.0 C5 A:G9 4.8 53.6 1.0 C5 A:G21 4.9 56.5 1.0 C5 A:G13 4.9 54.0 1.0 C5 A:G7 4.9 55.9 1.0 C5 A:G19 5.0 59.0 1.0 C5 A:G15 5.0 53.0 1.0

Potassium binding site 2 out of 6 in the Crystal Structure of R(Gu)11G-Nmm Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of R(Gu)11G-Nmm Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:K103 b:67.7 occ:1.00 O6 A:G3 2.6 52.5 1.0 O6 A:G21 2.6 60.3 1.0 O6 A:G11 2.6 65.7 1.0 O6 A:G5 2.7 58.4 1.0 O6 A:G9 2.7 55.2 1.0 O6 A:G15 2.8 54.5 1.0 O6 A:G23 2.9 59.7 1.0 O6 A:G17 2.9 62.3 1.0 K A:K102 3.2 54.9 1.0 H1 A:G17 3.3 57.7 1.0 H1 A:G21 3.4 55.2 1.0 K A:K104 3.5 60.4 1.0 C6 A:G21 3.5 56.5 1.0 C6 A:G3 3.6 55.1 1.0 C6 A:G9 3.6 54.9 1.0 C6 A:G5 3.7 52.7 1.0 C6 A:G11 3.7 61.5 1.0 H1 A:G3 3.7 56.5 1.0 H1 A:G11 3.7 62.0 1.0 C6 A:G17 3.7 56.6 1.0 C6 A:G15 3.7 53.8 1.0 H1 A:G9 3.8 55.3 1.0 H1 A:G23 3.8 58.5 1.0 N1 A:G21 3.8 54.3 1.0 C6 A:G23 3.8 57.2 1.0 H1 A:G15 3.8 52.3 1.0 H1 A:G5 3.8 53.0 1.0 N1 A:G17 3.8 58.1 1.0 N1 A:G3 4.1 55.3 1.0 N1 A:G9 4.1 54.1 1.0 N1 A:G11 4.1 63.0 1.0 N1 A:G5 4.2 52.7 1.0 N1 A:G23 4.2 59.6 1.0 N1 A:G15 4.2 51.2 1.0 C5 A:G21 4.7 56.5 1.0 C5 A:G9 4.8 53.6 1.0 C5 A:G3 4.8 57.5 1.0 C5 A:G5 4.8 52.9 1.0 C5 A:G15 4.9 53.0 1.0 C5 A:G11 4.9 59.0 1.0 C5 A:G17 5.0 58.5 1.0

Potassium binding site 3 out of 6 in the Crystal Structure of R(Gu)11G-Nmm Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of R(Gu)11G-Nmm Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:K104 b:60.4 occ:1.00 O6 A:G5 2.7 58.4 1.0 O4 A:U10 2.8 62.0 1.0 O4 A:U4 2.8 63.8 1.0 O4 A:U22 2.8 60.9 1.0 O6 A:G23 2.9 59.7 1.0 O6 A:G17 2.9 62.3 1.0 O4 A:U16 3.0 60.8 1.0 O6 A:G11 3.1 65.7 1.0 H3 A:U4 3.1 64.4 1.0 H3 A:U10 3.2 63.2 1.0 H1 A:G17 3.3 57.7 1.0 H3 A:U16 3.3 64.7 1.0 K A:K103 3.5 67.7 1.0 H3 A:U22 3.5 61.1 1.0 C6 A:G5 3.5 52.7 1.0 H1 A:G5 3.6 53.0 1.0 H1 A:G23 3.6 58.5 1.0 C4 A:U4 3.6 63.5 1.0 C4 A:U10 3.6 62.4 1.0 C6 A:G17 3.7 56.6 1.0 C6 A:G23 3.7 57.2 1.0 N3 A:U4 3.7 65.8 1.0 C4 A:U22 3.8 61.2 1.0 N3 A:U10 3.8 63.2 1.0 N1 A:G17 3.8 58.1 1.0 C6 A:G11 3.8 61.5 1.0 C4 A:U16 3.8 62.7 1.0 N1 A:G5 3.9 52.7 1.0 H1 A:G11 3.9 62.0 1.0 N3 A:U16 4.0 64.8 1.0 N1 A:G23 4.0 59.6 1.0 N3 A:U22 4.1 61.0 1.0 N1 A:G11 4.2 63.0 1.0 C5 A:G5 4.7 52.9 1.0 C5 A:G11 4.9 59.0 1.0 C5 A:G17 4.9 58.5 1.0 C5 A:G23 4.9 59.5 1.0 C5 A:U4 4.9 65.7 1.0 C5 A:U10 5.0 64.4 1.0 C2 A:U4 5.0 62.2 1.0 C2 A:G17 5.0 56.9 1.0

Potassium binding site 4 out of 6 in the Crystal Structure of R(Gu)11G-Nmm Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of R(Gu)11G-Nmm Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:K105 b:86.0 occ:1.00 O3' A:G3 3.0 67.7 1.0 O2' A:U2 3.3 76.8 1.0 O2' A:G3 3.4 64.8 1.0 HO2' A:U2 3.5 30.0 0.0 H4' A:G3 3.6 67.2 1.0 OP1 A:U4 3.7 72.9 1.0 H6 A:U2 3.7 81.8 1.0 H1' A:U2 3.8 78.8 1.0 P A:U4 3.9 74.2 1.0 HO2' A:G3 4.0 30.0 0.0 C3' A:G3 4.0 68.6 1.0 O5' A:U4 4.1 72.8 1.0 C4' A:G3 4.3 66.6 1.0 C2' A:G3 4.3 65.5 1.0 C2' A:U2 4.4 76.5 1.0 O3' A:U2 4.4 67.9 1.0 C6 A:U2 4.5 81.5 1.0 C1' A:U2 4.5 79.8 1.0 H3' A:G3 4.9 67.4 1.0 N1 A:U2 4.9 81.1 1.0

Potassium binding site 5 out of 6 in the Crystal Structure of R(Gu)11G-Nmm Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of R(Gu)11G-Nmm Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:K106 b:75.3 occ:1.00 O2' A:U20 2.8 72.1 1.0 O3' A:G21 3.0 64.9 1.0 HO2' A:U20 3.2 30.0 0.0 H6 A:U20 3.3 66.8 1.0 OP1 A:U22 3.3 64.1 1.0 O2' A:G21 3.5 62.1 1.0 H4' A:G21 3.6 64.5 1.0 H5'' A:U22 3.6 69.0 1.0 P A:U22 3.8 69.9 1.0 H1' A:U20 3.9 66.3 1.0 C3' A:G21 4.0 64.4 1.0 C2' A:U20 4.1 67.6 1.0 C6 A:U20 4.1 67.9 1.0 O3' A:U20 4.3 66.0 1.0 HO2' A:G21 4.3 30.0 0.0 C4' A:G21 4.3 64.5 1.0 C5' A:U22 4.3 70.0 1.0 C2' A:G21 4.3 60.6 1.0 C1' A:U20 4.4 66.3 1.0 H5' A:U22 4.4 69.0 1.0 O5' A:U22 4.5 66.7 1.0 N1 A:U20 4.7 64.7 1.0 C3' A:U20 4.8 67.1 1.0 H2' A:U20 4.9 68.1 1.0 H3' A:G21 4.9 63.8 1.0 O5' A:G21 4.9 72.3 1.0

Potassium binding site 6 out of 6 in the Crystal Structure of R(Gu)11G-Nmm Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Crystal Structure of R(Gu)11G-Nmm Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:K107 b:92.6 occ:1.00 HO2' A:U14 2.5 30.0 0.0 O2' A:G15 2.8 67.5 1.0 O2' A:U14 2.9 72.9 1.0 HO2' A:G15 3.0 30.0 0.0 H6 A:U14 3.5 75.0 1.0 H5'' A:U16 3.7 71.3 1.0 C6 A:U14 3.9 74.3 1.0 O3' A:G15 4.1 65.5 1.0 C2' A:G15 4.1 62.8 1.0 C2' A:U14 4.1 72.6 1.0 H4' A:G15 4.2 63.7 1.0 H5' A:U16 4.2 71.3 1.0 C5' A:U16 4.4 70.1 1.0 H2' A:U14 4.5 72.1 1.0 C5 A:U14 4.5 78.2 1.0 N1 A:U14 4.5 72.7 1.0 H5 A:U14 4.5 77.5 1.0 H1' A:U14 4.5 72.8 1.0 C1' A:U14 4.6 72.4 1.0 C3' A:G15 4.6 63.9 1.0 H1' A:G15 4.6 60.7 1.0 H2' A:G15 4.7 63.4 1.0 C4' A:G15 4.8 62.9 1.0 C1' A:G15 4.9 60.5 1.0 H4' A:U16 5.0 72.7 1.0

C.A.Bingman, S.Roschdi, Y.Nomura, S.E.Butcher. Crystal Structure of R(Gu)11G-Nmm Complex To Be Published.