Atomistry » Potassium » PDB 7loo-7ny1 » 7mkt
Atomistry »
  Potassium »
    PDB 7loo-7ny1 »
      7mkt »

Potassium in PDB 7mkt: Crystal Structure of R(Gu)11G-Nmm Complex

Protein crystallography data

The structure of Crystal Structure of R(Gu)11G-Nmm Complex, PDB code: 7mkt was solved by C.A.Bingman, S.Roschdi, Y.Nomura, S.E.Butcher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.61 / 1.97
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 42.475, 42.483, 21.607, 90, 90.09, 90
R / Rfree (%) 26.9 / 29.1

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of R(Gu)11G-Nmm Complex (pdb code 7mkt). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 6 binding sites of Potassium where determined in the Crystal Structure of R(Gu)11G-Nmm Complex, PDB code: 7mkt:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6;

Potassium binding site 1 out of 6 in 7mkt

Go back to Potassium Binding Sites List in 7mkt
Potassium binding site 1 out of 6 in the Crystal Structure of R(Gu)11G-Nmm Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of R(Gu)11G-Nmm Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K102

b:54.9
occ:1.00
O6 A:G9 2.7 55.2 1.0
O6 A:G1 2.7 56.9 1.0
O6 A:G13 2.7 54.9 1.0
O6 A:G7 2.8 60.1 1.0
O6 A:G21 2.8 60.3 1.0
O6 A:G15 2.9 54.5 1.0
O6 A:G19 2.9 60.7 1.0
O6 A:G3 3.0 52.5 1.0
K A:K103 3.2 67.7 1.0
H1 A:G21 3.5 55.2 1.0
H1 A:G1 3.5 56.0 1.0
C6 A:G1 3.6 54.6 1.0
C6 A:G21 3.6 56.5 1.0
H1 A:G13 3.7 52.6 1.0
C6 A:G13 3.7 52.0 1.0
C6 A:G9 3.7 54.9 1.0
H1 A:G7 3.7 53.2 1.0
H1 A:G19 3.7 58.1 1.0
C6 A:G7 3.7 54.9 1.0
C6 A:G19 3.8 59.1 1.0
C6 A:G15 3.8 53.8 1.0
H1 A:G15 3.8 52.3 1.0
H1 A:G9 3.8 55.3 1.0
N1 A:G21 3.9 54.3 1.0
N1 A:G1 3.9 55.6 1.0
C6 A:G3 3.9 55.1 1.0
H1 A:G3 3.9 56.5 1.0
N1 A:G13 4.0 52.2 1.0
N1 A:G7 4.1 52.1 1.0
N1 A:G19 4.1 57.5 1.0
H11 A:MMP101 4.1 56.1 0.8
N1 A:G9 4.2 54.1 1.0
N1 A:G15 4.2 51.2 1.0
H13 A:MMP101 4.3 56.0 0.8
N1 A:G3 4.3 55.3 1.0
C1 A:MMP101 4.7 57.8 0.8
C5 A:G1 4.8 57.2 1.0
C5 A:G9 4.8 53.6 1.0
C5 A:G21 4.9 56.5 1.0
C5 A:G13 4.9 54.0 1.0
C5 A:G7 4.9 55.9 1.0
C5 A:G19 5.0 59.0 1.0
C5 A:G15 5.0 53.0 1.0

Potassium binding site 2 out of 6 in 7mkt

Go back to Potassium Binding Sites List in 7mkt
Potassium binding site 2 out of 6 in the Crystal Structure of R(Gu)11G-Nmm Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of R(Gu)11G-Nmm Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K103

b:67.7
occ:1.00
O6 A:G3 2.6 52.5 1.0
O6 A:G21 2.6 60.3 1.0
O6 A:G11 2.6 65.7 1.0
O6 A:G5 2.7 58.4 1.0
O6 A:G9 2.7 55.2 1.0
O6 A:G15 2.8 54.5 1.0
O6 A:G23 2.9 59.7 1.0
O6 A:G17 2.9 62.3 1.0
K A:K102 3.2 54.9 1.0
H1 A:G17 3.3 57.7 1.0
H1 A:G21 3.4 55.2 1.0
K A:K104 3.5 60.4 1.0
C6 A:G21 3.5 56.5 1.0
C6 A:G3 3.6 55.1 1.0
C6 A:G9 3.6 54.9 1.0
C6 A:G5 3.7 52.7 1.0
C6 A:G11 3.7 61.5 1.0
H1 A:G3 3.7 56.5 1.0
H1 A:G11 3.7 62.0 1.0
C6 A:G17 3.7 56.6 1.0
C6 A:G15 3.7 53.8 1.0
H1 A:G9 3.8 55.3 1.0
H1 A:G23 3.8 58.5 1.0
N1 A:G21 3.8 54.3 1.0
C6 A:G23 3.8 57.2 1.0
H1 A:G15 3.8 52.3 1.0
H1 A:G5 3.8 53.0 1.0
N1 A:G17 3.8 58.1 1.0
N1 A:G3 4.1 55.3 1.0
N1 A:G9 4.1 54.1 1.0
N1 A:G11 4.1 63.0 1.0
N1 A:G5 4.2 52.7 1.0
N1 A:G23 4.2 59.6 1.0
N1 A:G15 4.2 51.2 1.0
C5 A:G21 4.7 56.5 1.0
C5 A:G9 4.8 53.6 1.0
C5 A:G3 4.8 57.5 1.0
C5 A:G5 4.8 52.9 1.0
C5 A:G15 4.9 53.0 1.0
C5 A:G11 4.9 59.0 1.0
C5 A:G17 5.0 58.5 1.0

Potassium binding site 3 out of 6 in 7mkt

Go back to Potassium Binding Sites List in 7mkt
Potassium binding site 3 out of 6 in the Crystal Structure of R(Gu)11G-Nmm Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of R(Gu)11G-Nmm Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K104

b:60.4
occ:1.00
O6 A:G5 2.7 58.4 1.0
O4 A:U10 2.8 62.0 1.0
O4 A:U4 2.8 63.8 1.0
O4 A:U22 2.8 60.9 1.0
O6 A:G23 2.9 59.7 1.0
O6 A:G17 2.9 62.3 1.0
O4 A:U16 3.0 60.8 1.0
O6 A:G11 3.1 65.7 1.0
H3 A:U4 3.1 64.4 1.0
H3 A:U10 3.2 63.2 1.0
H1 A:G17 3.3 57.7 1.0
H3 A:U16 3.3 64.7 1.0
K A:K103 3.5 67.7 1.0
H3 A:U22 3.5 61.1 1.0
C6 A:G5 3.5 52.7 1.0
H1 A:G5 3.6 53.0 1.0
H1 A:G23 3.6 58.5 1.0
C4 A:U4 3.6 63.5 1.0
C4 A:U10 3.6 62.4 1.0
C6 A:G17 3.7 56.6 1.0
C6 A:G23 3.7 57.2 1.0
N3 A:U4 3.7 65.8 1.0
C4 A:U22 3.8 61.2 1.0
N3 A:U10 3.8 63.2 1.0
N1 A:G17 3.8 58.1 1.0
C6 A:G11 3.8 61.5 1.0
C4 A:U16 3.8 62.7 1.0
N1 A:G5 3.9 52.7 1.0
H1 A:G11 3.9 62.0 1.0
N3 A:U16 4.0 64.8 1.0
N1 A:G23 4.0 59.6 1.0
N3 A:U22 4.1 61.0 1.0
N1 A:G11 4.2 63.0 1.0
C5 A:G5 4.7 52.9 1.0
C5 A:G11 4.9 59.0 1.0
C5 A:G17 4.9 58.5 1.0
C5 A:G23 4.9 59.5 1.0
C5 A:U4 4.9 65.7 1.0
C5 A:U10 5.0 64.4 1.0
C2 A:U4 5.0 62.2 1.0
C2 A:G17 5.0 56.9 1.0

Potassium binding site 4 out of 6 in 7mkt

Go back to Potassium Binding Sites List in 7mkt
Potassium binding site 4 out of 6 in the Crystal Structure of R(Gu)11G-Nmm Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of R(Gu)11G-Nmm Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K105

b:86.0
occ:1.00
O3' A:G3 3.0 67.7 1.0
O2' A:U2 3.3 76.8 1.0
O2' A:G3 3.4 64.8 1.0
HO2' A:U2 3.5 30.0 0.0
H4' A:G3 3.6 67.2 1.0
OP1 A:U4 3.7 72.9 1.0
H6 A:U2 3.7 81.8 1.0
H1' A:U2 3.8 78.8 1.0
P A:U4 3.9 74.2 1.0
HO2' A:G3 4.0 30.0 0.0
C3' A:G3 4.0 68.6 1.0
O5' A:U4 4.1 72.8 1.0
C4' A:G3 4.3 66.6 1.0
C2' A:G3 4.3 65.5 1.0
C2' A:U2 4.4 76.5 1.0
O3' A:U2 4.4 67.9 1.0
C6 A:U2 4.5 81.5 1.0
C1' A:U2 4.5 79.8 1.0
H3' A:G3 4.9 67.4 1.0
N1 A:U2 4.9 81.1 1.0

Potassium binding site 5 out of 6 in 7mkt

Go back to Potassium Binding Sites List in 7mkt
Potassium binding site 5 out of 6 in the Crystal Structure of R(Gu)11G-Nmm Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of R(Gu)11G-Nmm Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K106

b:75.3
occ:1.00
O2' A:U20 2.8 72.1 1.0
O3' A:G21 3.0 64.9 1.0
HO2' A:U20 3.2 30.0 0.0
H6 A:U20 3.3 66.8 1.0
OP1 A:U22 3.3 64.1 1.0
O2' A:G21 3.5 62.1 1.0
H4' A:G21 3.6 64.5 1.0
H5'' A:U22 3.6 69.0 1.0
P A:U22 3.8 69.9 1.0
H1' A:U20 3.9 66.3 1.0
C3' A:G21 4.0 64.4 1.0
C2' A:U20 4.1 67.6 1.0
C6 A:U20 4.1 67.9 1.0
O3' A:U20 4.3 66.0 1.0
HO2' A:G21 4.3 30.0 0.0
C4' A:G21 4.3 64.5 1.0
C5' A:U22 4.3 70.0 1.0
C2' A:G21 4.3 60.6 1.0
C1' A:U20 4.4 66.3 1.0
H5' A:U22 4.4 69.0 1.0
O5' A:U22 4.5 66.7 1.0
N1 A:U20 4.7 64.7 1.0
C3' A:U20 4.8 67.1 1.0
H2' A:U20 4.9 68.1 1.0
H3' A:G21 4.9 63.8 1.0
O5' A:G21 4.9 72.3 1.0

Potassium binding site 6 out of 6 in 7mkt

Go back to Potassium Binding Sites List in 7mkt
Potassium binding site 6 out of 6 in the Crystal Structure of R(Gu)11G-Nmm Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Crystal Structure of R(Gu)11G-Nmm Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K107

b:92.6
occ:1.00
HO2' A:U14 2.5 30.0 0.0
O2' A:G15 2.8 67.5 1.0
O2' A:U14 2.9 72.9 1.0
HO2' A:G15 3.0 30.0 0.0
H6 A:U14 3.5 75.0 1.0
H5'' A:U16 3.7 71.3 1.0
C6 A:U14 3.9 74.3 1.0
O3' A:G15 4.1 65.5 1.0
C2' A:G15 4.1 62.8 1.0
C2' A:U14 4.1 72.6 1.0
H4' A:G15 4.2 63.7 1.0
H5' A:U16 4.2 71.3 1.0
C5' A:U16 4.4 70.1 1.0
H2' A:U14 4.5 72.1 1.0
C5 A:U14 4.5 78.2 1.0
N1 A:U14 4.5 72.7 1.0
H5 A:U14 4.5 77.5 1.0
H1' A:U14 4.5 72.8 1.0
C1' A:U14 4.6 72.4 1.0
C3' A:G15 4.6 63.9 1.0
H1' A:G15 4.6 60.7 1.0
H2' A:G15 4.7 63.4 1.0
C4' A:G15 4.8 62.9 1.0
C1' A:G15 4.9 60.5 1.0
H4' A:U16 5.0 72.7 1.0

Reference:

C.A.Bingman, S.Roschdi, Y.Nomura, S.E.Butcher. Crystal Structure of R(Gu)11G-Nmm Complex To Be Published.
Page generated: Mon Aug 12 19:26:28 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy