Potassium in PDB 7mkt: Crystal Structure of R(Gu)11G-Nmm Complex
Protein crystallography data
The structure of Crystal Structure of R(Gu)11G-Nmm Complex, PDB code: 7mkt
was solved by
C.A.Bingman,
S.Roschdi,
Y.Nomura,
S.E.Butcher,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
21.61 /
1.97
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
42.475,
42.483,
21.607,
90,
90.09,
90
|
R / Rfree (%)
|
26.9 /
29.1
|
Potassium Binding Sites:
The binding sites of Potassium atom in the Crystal Structure of R(Gu)11G-Nmm Complex
(pdb code 7mkt). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 6 binding sites of Potassium where determined in the
Crystal Structure of R(Gu)11G-Nmm Complex, PDB code: 7mkt:
Jump to Potassium binding site number:
1;
2;
3;
4;
5;
6;
Potassium binding site 1 out
of 6 in 7mkt
Go back to
Potassium Binding Sites List in 7mkt
Potassium binding site 1 out
of 6 in the Crystal Structure of R(Gu)11G-Nmm Complex
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Crystal Structure of R(Gu)11G-Nmm Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K102
b:54.9
occ:1.00
|
O6
|
A:G9
|
2.7
|
55.2
|
1.0
|
O6
|
A:G1
|
2.7
|
56.9
|
1.0
|
O6
|
A:G13
|
2.7
|
54.9
|
1.0
|
O6
|
A:G7
|
2.8
|
60.1
|
1.0
|
O6
|
A:G21
|
2.8
|
60.3
|
1.0
|
O6
|
A:G15
|
2.9
|
54.5
|
1.0
|
O6
|
A:G19
|
2.9
|
60.7
|
1.0
|
O6
|
A:G3
|
3.0
|
52.5
|
1.0
|
K
|
A:K103
|
3.2
|
67.7
|
1.0
|
H1
|
A:G21
|
3.5
|
55.2
|
1.0
|
H1
|
A:G1
|
3.5
|
56.0
|
1.0
|
C6
|
A:G1
|
3.6
|
54.6
|
1.0
|
C6
|
A:G21
|
3.6
|
56.5
|
1.0
|
H1
|
A:G13
|
3.7
|
52.6
|
1.0
|
C6
|
A:G13
|
3.7
|
52.0
|
1.0
|
C6
|
A:G9
|
3.7
|
54.9
|
1.0
|
H1
|
A:G7
|
3.7
|
53.2
|
1.0
|
H1
|
A:G19
|
3.7
|
58.1
|
1.0
|
C6
|
A:G7
|
3.7
|
54.9
|
1.0
|
C6
|
A:G19
|
3.8
|
59.1
|
1.0
|
C6
|
A:G15
|
3.8
|
53.8
|
1.0
|
H1
|
A:G15
|
3.8
|
52.3
|
1.0
|
H1
|
A:G9
|
3.8
|
55.3
|
1.0
|
N1
|
A:G21
|
3.9
|
54.3
|
1.0
|
N1
|
A:G1
|
3.9
|
55.6
|
1.0
|
C6
|
A:G3
|
3.9
|
55.1
|
1.0
|
H1
|
A:G3
|
3.9
|
56.5
|
1.0
|
N1
|
A:G13
|
4.0
|
52.2
|
1.0
|
N1
|
A:G7
|
4.1
|
52.1
|
1.0
|
N1
|
A:G19
|
4.1
|
57.5
|
1.0
|
H11
|
A:MMP101
|
4.1
|
56.1
|
0.8
|
N1
|
A:G9
|
4.2
|
54.1
|
1.0
|
N1
|
A:G15
|
4.2
|
51.2
|
1.0
|
H13
|
A:MMP101
|
4.3
|
56.0
|
0.8
|
N1
|
A:G3
|
4.3
|
55.3
|
1.0
|
C1
|
A:MMP101
|
4.7
|
57.8
|
0.8
|
C5
|
A:G1
|
4.8
|
57.2
|
1.0
|
C5
|
A:G9
|
4.8
|
53.6
|
1.0
|
C5
|
A:G21
|
4.9
|
56.5
|
1.0
|
C5
|
A:G13
|
4.9
|
54.0
|
1.0
|
C5
|
A:G7
|
4.9
|
55.9
|
1.0
|
C5
|
A:G19
|
5.0
|
59.0
|
1.0
|
C5
|
A:G15
|
5.0
|
53.0
|
1.0
|
|
Potassium binding site 2 out
of 6 in 7mkt
Go back to
Potassium Binding Sites List in 7mkt
Potassium binding site 2 out
of 6 in the Crystal Structure of R(Gu)11G-Nmm Complex
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Crystal Structure of R(Gu)11G-Nmm Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K103
b:67.7
occ:1.00
|
O6
|
A:G3
|
2.6
|
52.5
|
1.0
|
O6
|
A:G21
|
2.6
|
60.3
|
1.0
|
O6
|
A:G11
|
2.6
|
65.7
|
1.0
|
O6
|
A:G5
|
2.7
|
58.4
|
1.0
|
O6
|
A:G9
|
2.7
|
55.2
|
1.0
|
O6
|
A:G15
|
2.8
|
54.5
|
1.0
|
O6
|
A:G23
|
2.9
|
59.7
|
1.0
|
O6
|
A:G17
|
2.9
|
62.3
|
1.0
|
K
|
A:K102
|
3.2
|
54.9
|
1.0
|
H1
|
A:G17
|
3.3
|
57.7
|
1.0
|
H1
|
A:G21
|
3.4
|
55.2
|
1.0
|
K
|
A:K104
|
3.5
|
60.4
|
1.0
|
C6
|
A:G21
|
3.5
|
56.5
|
1.0
|
C6
|
A:G3
|
3.6
|
55.1
|
1.0
|
C6
|
A:G9
|
3.6
|
54.9
|
1.0
|
C6
|
A:G5
|
3.7
|
52.7
|
1.0
|
C6
|
A:G11
|
3.7
|
61.5
|
1.0
|
H1
|
A:G3
|
3.7
|
56.5
|
1.0
|
H1
|
A:G11
|
3.7
|
62.0
|
1.0
|
C6
|
A:G17
|
3.7
|
56.6
|
1.0
|
C6
|
A:G15
|
3.7
|
53.8
|
1.0
|
H1
|
A:G9
|
3.8
|
55.3
|
1.0
|
H1
|
A:G23
|
3.8
|
58.5
|
1.0
|
N1
|
A:G21
|
3.8
|
54.3
|
1.0
|
C6
|
A:G23
|
3.8
|
57.2
|
1.0
|
H1
|
A:G15
|
3.8
|
52.3
|
1.0
|
H1
|
A:G5
|
3.8
|
53.0
|
1.0
|
N1
|
A:G17
|
3.8
|
58.1
|
1.0
|
N1
|
A:G3
|
4.1
|
55.3
|
1.0
|
N1
|
A:G9
|
4.1
|
54.1
|
1.0
|
N1
|
A:G11
|
4.1
|
63.0
|
1.0
|
N1
|
A:G5
|
4.2
|
52.7
|
1.0
|
N1
|
A:G23
|
4.2
|
59.6
|
1.0
|
N1
|
A:G15
|
4.2
|
51.2
|
1.0
|
C5
|
A:G21
|
4.7
|
56.5
|
1.0
|
C5
|
A:G9
|
4.8
|
53.6
|
1.0
|
C5
|
A:G3
|
4.8
|
57.5
|
1.0
|
C5
|
A:G5
|
4.8
|
52.9
|
1.0
|
C5
|
A:G15
|
4.9
|
53.0
|
1.0
|
C5
|
A:G11
|
4.9
|
59.0
|
1.0
|
C5
|
A:G17
|
5.0
|
58.5
|
1.0
|
|
Potassium binding site 3 out
of 6 in 7mkt
Go back to
Potassium Binding Sites List in 7mkt
Potassium binding site 3 out
of 6 in the Crystal Structure of R(Gu)11G-Nmm Complex
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Crystal Structure of R(Gu)11G-Nmm Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K104
b:60.4
occ:1.00
|
O6
|
A:G5
|
2.7
|
58.4
|
1.0
|
O4
|
A:U10
|
2.8
|
62.0
|
1.0
|
O4
|
A:U4
|
2.8
|
63.8
|
1.0
|
O4
|
A:U22
|
2.8
|
60.9
|
1.0
|
O6
|
A:G23
|
2.9
|
59.7
|
1.0
|
O6
|
A:G17
|
2.9
|
62.3
|
1.0
|
O4
|
A:U16
|
3.0
|
60.8
|
1.0
|
O6
|
A:G11
|
3.1
|
65.7
|
1.0
|
H3
|
A:U4
|
3.1
|
64.4
|
1.0
|
H3
|
A:U10
|
3.2
|
63.2
|
1.0
|
H1
|
A:G17
|
3.3
|
57.7
|
1.0
|
H3
|
A:U16
|
3.3
|
64.7
|
1.0
|
K
|
A:K103
|
3.5
|
67.7
|
1.0
|
H3
|
A:U22
|
3.5
|
61.1
|
1.0
|
C6
|
A:G5
|
3.5
|
52.7
|
1.0
|
H1
|
A:G5
|
3.6
|
53.0
|
1.0
|
H1
|
A:G23
|
3.6
|
58.5
|
1.0
|
C4
|
A:U4
|
3.6
|
63.5
|
1.0
|
C4
|
A:U10
|
3.6
|
62.4
|
1.0
|
C6
|
A:G17
|
3.7
|
56.6
|
1.0
|
C6
|
A:G23
|
3.7
|
57.2
|
1.0
|
N3
|
A:U4
|
3.7
|
65.8
|
1.0
|
C4
|
A:U22
|
3.8
|
61.2
|
1.0
|
N3
|
A:U10
|
3.8
|
63.2
|
1.0
|
N1
|
A:G17
|
3.8
|
58.1
|
1.0
|
C6
|
A:G11
|
3.8
|
61.5
|
1.0
|
C4
|
A:U16
|
3.8
|
62.7
|
1.0
|
N1
|
A:G5
|
3.9
|
52.7
|
1.0
|
H1
|
A:G11
|
3.9
|
62.0
|
1.0
|
N3
|
A:U16
|
4.0
|
64.8
|
1.0
|
N1
|
A:G23
|
4.0
|
59.6
|
1.0
|
N3
|
A:U22
|
4.1
|
61.0
|
1.0
|
N1
|
A:G11
|
4.2
|
63.0
|
1.0
|
C5
|
A:G5
|
4.7
|
52.9
|
1.0
|
C5
|
A:G11
|
4.9
|
59.0
|
1.0
|
C5
|
A:G17
|
4.9
|
58.5
|
1.0
|
C5
|
A:G23
|
4.9
|
59.5
|
1.0
|
C5
|
A:U4
|
4.9
|
65.7
|
1.0
|
C5
|
A:U10
|
5.0
|
64.4
|
1.0
|
C2
|
A:U4
|
5.0
|
62.2
|
1.0
|
C2
|
A:G17
|
5.0
|
56.9
|
1.0
|
|
Potassium binding site 4 out
of 6 in 7mkt
Go back to
Potassium Binding Sites List in 7mkt
Potassium binding site 4 out
of 6 in the Crystal Structure of R(Gu)11G-Nmm Complex
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 4 of Crystal Structure of R(Gu)11G-Nmm Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K105
b:86.0
occ:1.00
|
O3'
|
A:G3
|
3.0
|
67.7
|
1.0
|
O2'
|
A:U2
|
3.3
|
76.8
|
1.0
|
O2'
|
A:G3
|
3.4
|
64.8
|
1.0
|
HO2'
|
A:U2
|
3.5
|
30.0
|
0.0
|
H4'
|
A:G3
|
3.6
|
67.2
|
1.0
|
OP1
|
A:U4
|
3.7
|
72.9
|
1.0
|
H6
|
A:U2
|
3.7
|
81.8
|
1.0
|
H1'
|
A:U2
|
3.8
|
78.8
|
1.0
|
P
|
A:U4
|
3.9
|
74.2
|
1.0
|
HO2'
|
A:G3
|
4.0
|
30.0
|
0.0
|
C3'
|
A:G3
|
4.0
|
68.6
|
1.0
|
O5'
|
A:U4
|
4.1
|
72.8
|
1.0
|
C4'
|
A:G3
|
4.3
|
66.6
|
1.0
|
C2'
|
A:G3
|
4.3
|
65.5
|
1.0
|
C2'
|
A:U2
|
4.4
|
76.5
|
1.0
|
O3'
|
A:U2
|
4.4
|
67.9
|
1.0
|
C6
|
A:U2
|
4.5
|
81.5
|
1.0
|
C1'
|
A:U2
|
4.5
|
79.8
|
1.0
|
H3'
|
A:G3
|
4.9
|
67.4
|
1.0
|
N1
|
A:U2
|
4.9
|
81.1
|
1.0
|
|
Potassium binding site 5 out
of 6 in 7mkt
Go back to
Potassium Binding Sites List in 7mkt
Potassium binding site 5 out
of 6 in the Crystal Structure of R(Gu)11G-Nmm Complex
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 5 of Crystal Structure of R(Gu)11G-Nmm Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K106
b:75.3
occ:1.00
|
O2'
|
A:U20
|
2.8
|
72.1
|
1.0
|
O3'
|
A:G21
|
3.0
|
64.9
|
1.0
|
HO2'
|
A:U20
|
3.2
|
30.0
|
0.0
|
H6
|
A:U20
|
3.3
|
66.8
|
1.0
|
OP1
|
A:U22
|
3.3
|
64.1
|
1.0
|
O2'
|
A:G21
|
3.5
|
62.1
|
1.0
|
H4'
|
A:G21
|
3.6
|
64.5
|
1.0
|
H5''
|
A:U22
|
3.6
|
69.0
|
1.0
|
P
|
A:U22
|
3.8
|
69.9
|
1.0
|
H1'
|
A:U20
|
3.9
|
66.3
|
1.0
|
C3'
|
A:G21
|
4.0
|
64.4
|
1.0
|
C2'
|
A:U20
|
4.1
|
67.6
|
1.0
|
C6
|
A:U20
|
4.1
|
67.9
|
1.0
|
O3'
|
A:U20
|
4.3
|
66.0
|
1.0
|
HO2'
|
A:G21
|
4.3
|
30.0
|
0.0
|
C4'
|
A:G21
|
4.3
|
64.5
|
1.0
|
C5'
|
A:U22
|
4.3
|
70.0
|
1.0
|
C2'
|
A:G21
|
4.3
|
60.6
|
1.0
|
C1'
|
A:U20
|
4.4
|
66.3
|
1.0
|
H5'
|
A:U22
|
4.4
|
69.0
|
1.0
|
O5'
|
A:U22
|
4.5
|
66.7
|
1.0
|
N1
|
A:U20
|
4.7
|
64.7
|
1.0
|
C3'
|
A:U20
|
4.8
|
67.1
|
1.0
|
H2'
|
A:U20
|
4.9
|
68.1
|
1.0
|
H3'
|
A:G21
|
4.9
|
63.8
|
1.0
|
O5'
|
A:G21
|
4.9
|
72.3
|
1.0
|
|
Potassium binding site 6 out
of 6 in 7mkt
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Potassium Binding Sites List in 7mkt
Potassium binding site 6 out
of 6 in the Crystal Structure of R(Gu)11G-Nmm Complex
Mono view
Stereo pair view
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A full contact list of Potassium with other atoms in the K binding
site number 6 of Crystal Structure of R(Gu)11G-Nmm Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K107
b:92.6
occ:1.00
|
HO2'
|
A:U14
|
2.5
|
30.0
|
0.0
|
O2'
|
A:G15
|
2.8
|
67.5
|
1.0
|
O2'
|
A:U14
|
2.9
|
72.9
|
1.0
|
HO2'
|
A:G15
|
3.0
|
30.0
|
0.0
|
H6
|
A:U14
|
3.5
|
75.0
|
1.0
|
H5''
|
A:U16
|
3.7
|
71.3
|
1.0
|
C6
|
A:U14
|
3.9
|
74.3
|
1.0
|
O3'
|
A:G15
|
4.1
|
65.5
|
1.0
|
C2'
|
A:G15
|
4.1
|
62.8
|
1.0
|
C2'
|
A:U14
|
4.1
|
72.6
|
1.0
|
H4'
|
A:G15
|
4.2
|
63.7
|
1.0
|
H5'
|
A:U16
|
4.2
|
71.3
|
1.0
|
C5'
|
A:U16
|
4.4
|
70.1
|
1.0
|
H2'
|
A:U14
|
4.5
|
72.1
|
1.0
|
C5
|
A:U14
|
4.5
|
78.2
|
1.0
|
N1
|
A:U14
|
4.5
|
72.7
|
1.0
|
H5
|
A:U14
|
4.5
|
77.5
|
1.0
|
H1'
|
A:U14
|
4.5
|
72.8
|
1.0
|
C1'
|
A:U14
|
4.6
|
72.4
|
1.0
|
C3'
|
A:G15
|
4.6
|
63.9
|
1.0
|
H1'
|
A:G15
|
4.6
|
60.7
|
1.0
|
H2'
|
A:G15
|
4.7
|
63.4
|
1.0
|
C4'
|
A:G15
|
4.8
|
62.9
|
1.0
|
C1'
|
A:G15
|
4.9
|
60.5
|
1.0
|
H4'
|
A:U16
|
5.0
|
72.7
|
1.0
|
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Reference:
C.A.Bingman,
S.Roschdi,
Y.Nomura,
S.E.Butcher.
Crystal Structure of R(Gu)11G-Nmm Complex To Be Published.
Page generated: Mon Aug 12 19:26:28 2024
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