Potassium in PDB 7jze: Dihydrodipicolinate Synthase Mutant S48W with Lysine in the Allosteric Site

Enzymatic activity of Dihydrodipicolinate Synthase Mutant S48W with Lysine in the Allosteric Site

All present enzymatic activity of Dihydrodipicolinate Synthase Mutant S48W with Lysine in the Allosteric Site:
4.3.3.7;

Protein crystallography data

The structure of Dihydrodipicolinate Synthase Mutant S48W with Lysine in the Allosteric Site, PDB code: 7jze was solved by A.J.Board, R.C.J.Dobson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.31 / 2.00
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 121.162, 121.162, 111.968, 90, 90, 120
R / Rfree (%) 18.2 / 22.3

Potassium Binding Sites:

The binding sites of Potassium atom in the Dihydrodipicolinate Synthase Mutant S48W with Lysine in the Allosteric Site (pdb code 7jze). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Dihydrodipicolinate Synthase Mutant S48W with Lysine in the Allosteric Site, PDB code: 7jze:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 7jze

Go back to Potassium Binding Sites List in 7jze
Potassium binding site 1 out of 2 in the Dihydrodipicolinate Synthase Mutant S48W with Lysine in the Allosteric Site


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Dihydrodipicolinate Synthase Mutant S48W with Lysine in the Allosteric Site within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K301

b:37.7
occ:1.00
O A:HOH582 2.4 57.5 1.0
O A:VAL154 2.5 37.9 1.0
O A:ILE157 2.6 35.9 1.0
O A:ALA152 2.6 29.2 1.0
O A:HOH577 2.8 48.1 1.0
O A:LYS155 3.2 45.8 1.0
C A:VAL154 3.6 37.0 1.0
C A:ILE157 3.7 32.1 1.0
C A:ALA152 3.7 30.7 1.0
C A:LYS155 3.7 44.6 1.0
CA A:LYS155 4.1 44.8 1.0
N A:ILE157 4.2 35.3 1.0
N A:LYS155 4.3 44.2 1.0
CA A:ALA152 4.4 28.7 1.0
CA A:ILE157 4.4 33.8 1.0
C A:LYS153 4.5 41.7 1.0
N A:VAL154 4.5 42.1 1.0
N A:ASN156 4.6 38.1 1.0
N A:ILE158 4.6 30.7 1.0
CA A:ILE158 4.6 33.7 1.0
N A:LYS153 4.6 32.2 1.0
CA A:VAL154 4.7 37.1 1.0
O A:LYS153 4.7 43.1 1.0
CD1 A:PHE181 4.8 29.9 1.0
CA A:LYS153 4.8 39.2 1.0
CB A:ILE157 4.8 32.9 1.0
C A:ASN156 4.9 37.5 1.0
O A:LEU151 5.0 29.1 1.0
CG2 A:ILE158 5.0 41.9 1.0

Potassium binding site 2 out of 2 in 7jze

Go back to Potassium Binding Sites List in 7jze
Potassium binding site 2 out of 2 in the Dihydrodipicolinate Synthase Mutant S48W with Lysine in the Allosteric Site


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Dihydrodipicolinate Synthase Mutant S48W with Lysine in the Allosteric Site within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K301

b:31.6
occ:1.00
O B:ALA152 2.6 25.7 1.0
O B:ILE157 2.7 28.2 1.0
O B:HOH588 2.7 36.5 1.0
O B:VAL154 2.7 35.4 1.0
O B:HOH573 2.9 48.6 1.0
O B:LYS155 3.0 35.5 1.0
C B:LYS155 3.6 35.1 1.0
C B:VAL154 3.6 34.2 1.0
C B:ALA152 3.7 25.9 1.0
C B:ILE157 3.7 25.9 1.0
CA B:LYS155 3.9 33.3 1.0
N B:ILE157 4.1 25.9 1.0
O B:HOH530 4.2 48.7 1.0
N B:LYS155 4.2 35.9 1.0
N B:VAL154 4.3 34.5 1.0
CA B:ALA152 4.4 24.1 1.0
C B:LYS153 4.5 34.7 1.0
N B:ASN156 4.5 27.7 1.0
CA B:ILE157 4.5 24.0 1.0
N B:ILE158 4.6 23.5 1.0
CA B:ILE158 4.7 25.7 1.0
N B:LYS153 4.7 26.9 1.0
CA B:VAL154 4.7 31.6 1.0
O B:LYS153 4.8 35.9 1.0
CB B:ILE157 4.8 24.6 1.0
CA B:LYS153 4.8 30.4 1.0
C B:ASN156 4.9 26.8 1.0
CD1 B:PHE181 4.9 27.4 1.0
O B:LEU151 5.0 25.5 1.0
CG2 B:ILE158 5.0 32.0 1.0

Reference:

A.J.Board, R.C.J.Dobson. Mapping the Uncharted Water Channel of Dhdps To Be Published.
Page generated: Fri Sep 24 14:41:39 2021

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